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Genomic and molecular alterations associated with primary resistance to immune checkpoint inhibitors.
- Published in:
- Cancer Immunology, Immunotherapy, 2024, v. 73, n. 11, p. 1, doi. 10.1007/s00262-024-03825-z
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- Publication type:
- Article
Copy neutral loss of heterozygosity is more frequent in older ovarian cancer patients.
- Published in:
- Genes, Chromosomes & Cancer, 2013, v. 52, n. 9, p. 794, doi. 10.1002/gcc.22075
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- Publication type:
- Article
IMPACT: a whole-exome sequencing analysis pipeline for integrating molecular profiles with actionable therapeutics in clinical samples.
- Published in:
- 2016
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- Publication type:
- journal article
A gold rush for personal genomics?
- Published in:
- Biologist, 2008, v. 55, n. 4, p. 230
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- Publication type:
- Article
Interaction preferences across protein-protein interfaces of obligatory and non-obligatory components are different.
- Published in:
- BMC Structural Biology, 2005, v. 5, p. 15, doi. 10.1186/1472-6807-5-15
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- Publication type:
- Article
DNA replication timing and higher-order nuclear organization determine single-nucleotide substitution patterns in cancer genomes.
- Published in:
- Nature Communications, 2013, v. 4, n. 2, p. 1502, doi. 10.1038/ncomms2502
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- Publication type:
- Article
Characterization of the nonregular regions of proteins by a contortion index.
- Published in:
- Biopolymers, 2005, v. 79, n. 2, p. 63, doi. 10.1002/bip.20333
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- Publication type:
- Article
Journal club.
- Published in:
- Nature, 2009, v. 460, n. 7251, p. 15, doi. 10.1038/460015e
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- Publication type:
- Article
FERMI: A Novel Method for Sensitive Detection of Rare Mutations in Somatic Tissue.
- Published in:
- G3: Genes | Genomes | Genetics, 2019, v. 9, n. 9, p. 2977, doi. 10.1534/g3.119.400438
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- Publication type:
- Article
Aberration in DNA Methylation in B-Cell Lymphomas Has a Complex Origin and Increases with Disease Severity.
- Published in:
- PLoS Genetics, 2013, v. 9, n. 1, p. 1, doi. 10.1371/journal.pgen.1003137
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- Publication type:
- Article
DNA secondary structures and epigenetic determinants of cancer genome evolution.
- Published in:
- Nature Structural & Molecular Biology, 2011, v. 18, n. 8, p. 950, doi. 10.1038/nsmb.2089
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- Publication type:
- Article
Mutational signatures and mutable motifs in cancer genomes.
- Published in:
- Briefings in Bioinformatics, 2018, v. 19, n. 6, p. 1085, doi. 10.1093/bib/bbx049
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- Publication type:
- Article
An assessment of computational methods for estimating purity and clonality using genomic data derived from heterogeneous tumor tissue samples.
- Published in:
- Briefings in Bioinformatics, 2015, v. 16, n. 2, p. 232, doi. 10.1093/bib/bbu002
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- Publication type:
- Article
The dilemma of choosing the ideal permutation strategy while estimating statistical significance of genome-wide enrichment.
- Published in:
- Briefings in Bioinformatics, 2014, v. 15, n. 6, p. 919
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- Publication type:
- Article
Signatures Beyond Oncogenic Mutations in Cell-Free DNA Sequencing for Non-Invasive, Early Detection of Cancer.
- Published in:
- Frontiers in Genetics, 2021, v. 12, p. 1, doi. 10.3389/fgene.2021.759832
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- Publication type:
- Article
Editorial: Genomic Colocalization and Enrichment Analyses.
- Published in:
- 2021
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- Publication type:
- Editorial
Analyzing the association of SCNA boundaries with replication timing.
- Published in:
- Nature Biotechnology, 2012, v. 30, n. 11, p. 1045, doi. 10.1038/nbt.2414
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- Publication type:
- Article
DNA replication timing and long-range DNA interactions predict mutational landscapes of cancer genomes.
- Published in:
- Nature Biotechnology, 2011, v. 29, n. 12, p. 1103, doi. 10.1038/nbt.2030
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- Publication type:
- Article
Histone Modifications Are Associated with Transcript Isoform Diversity in Normal and Cancer Cells.
- Published in:
- PLoS Computational Biology, 2014, v. 10, n. 6, p. 1, doi. 10.1371/journal.pcbi.1003611
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- Publication type:
- Article
Hierarchical and automated cell-type annotation and inference of cancer cell of origin with Census.
- Published in:
- Bioinformatics, 2023, v. 39, n. 12, p. 1, doi. 10.1093/bioinformatics/btad714
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- Publication type:
- Article
Large extracellular vesicles carry most of the tumour DNA circulating in prostate cancer patient plasma.
- Published in:
- Journal of Extracellular Vesicles, 2018, v. 7, n. 1, p. 1, doi. 10.1080/20013078.2018.1505403
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- Publication type:
- Article
Large extracellular vesicles carry most of the tumour DNA circulating in prostate cancer patient plasma.
- Published in:
- Journal of Extracellular Vesicles, 2018, v. 7, n. 1, p. 1, doi. 10.1080/20013078.2018.1505403
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- Publication type:
- Article
Identification of regulators of poly-ADP-ribose polymerase inhibitor response through complementary CRISPR knockout and activation screens.
- Published in:
- Nature Communications, 2020, v. 11, n. 1, p. N.PAG, doi. 10.1038/s41467-020-19961-w
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- Publication type:
- Article
Whole Genome Sequencing Highlights Genetic Changes Associated with Laboratory Domestication of C. elegans.
- Published in:
- PLoS ONE, 2010, v. 5, n. 11, p. 1, doi. 10.1371/journal.pone.0013922
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- Publication type:
- Article
Polyploidy can drive rapid adaptation in yeast.
- Published in:
- Nature, 2015, v. 519, n. 7543, p. 349, doi. 10.1038/nature14187
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- Publication type:
- Article
Activation induced deaminase mutational signature overlaps with CpG methylation sites in follicular lymphoma and other cancers.
- Published in:
- Scientific Reports, 2016, p. 38133, doi. 10.1038/srep38133
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- Publication type:
- Article
Significance of duon mutations in cancer genomes.
- Published in:
- Scientific Reports, 2016, p. 27437, doi. 10.1038/srep27437
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- Publication type:
- Article
EVOLUTION AND MEDICINE IN UNDERGRADUATE EDUCATION: A PRESCRIPTION FOR ALL BIOLOGY STUDENTS.
- Published in:
- Evolution, 2012, v. 66, n. 6, p. 1991, doi. 10.1111/j.1558-5646.2011.01552.x
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- Publication type:
- Article
HUWE1 interacts with PCNA to alleviate replication stress.
- Published in:
- EMBO Reports, 2016, v. 17, n. 6, p. 874, doi. 10.15252/embr.201541685
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- Publication type:
- Article
KMT2C-deficient tumors have elevated APOBEC mutagenesis and genomic instability in multiple cancers.
- Published in:
- NAR Cancer, 2022, v. 4, n. 3, p. 1, doi. 10.1093/narcan/zcac023
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- Publication type:
- Article
Dissecting the sources of gene expression variation in a pan-cancer analysis identifies novel regulatory mutations.
- Published in:
- Nucleic Acids Research, 2018, v. 46, n. 9, p. 4370, doi. 10.1093/nar/gky271
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- Publication type:
- Article
The landscape of somatic mutations in protein coding genes in apparently benign human tissues carries signatures of relaxed purifying selection.
- Published in:
- Nucleic Acids Research, 2016, v. 44, n. 5, p. 2075, doi. 10.1093/nar/gkw086
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- Publication type:
- Article
Signatures of accelerated somatic evolution in gene promoters in multiple cancer types.
- Published in:
- Nucleic Acids Research, 2015, v. 43, n. 11, p. 5307, doi. 10.1093/nar/gkv419
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- Publication type:
- Article
Loss of heterozygosity preferentially occurs in early replicating regions in cancer genomes.
- Published in:
- Nucleic Acids Research, 2013, v. 41, n. 16, p. 7615, doi. 10.1093/nar/gkt552
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- Publication type:
- Article
SomVarIUS: somatic variant identification from unpaired tissue samples.
- Published in:
- Bioinformatics, 2016, v. 32, n. 6, p. 808, doi. 10.1093/bioinformatics/btv685
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- Publication type:
- Article
CruzDB: software for annotation of genomic intervals with UCSC genome-browser database.
- Published in:
- Bioinformatics, 2013, v. 29, n. 23, p. 3003, doi. 10.1093/bioinformatics/btt534
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- Publication type:
- Article
Mutational signature SBS8 predominantly arises due to late replication errors in cancer.
- Published in:
- Communications Biology, 2020, v. 3, n. 1, p. 1, doi. 10.1038/s42003-020-01119-5
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- Publication type:
- Article
Association between SMAD4 Mutations and GATA6 Expression in Paired Pancreatic Ductal Adenocarcinoma Tumor Specimens: Data from Two Independent Molecularly-Characterized Cohorts.
- Published in:
- Biomedicines, 2023, v. 11, n. 11, p. 3058, doi. 10.3390/biomedicines11113058
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- Publication type:
- Article
BloodExpress: a database of gene expression in mouse haematopoiesis.
- Published in:
- Nucleic Acids Research, 2009, v. 37, n. suppl_1, p. D873, doi. 10.1093/nar/gkn854
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- Publication type:
- Article
Plasma-Derived Cell-Free DNA as a Biomarker for Early Detection, Prognostication, and Personalized Treatment of Urothelial Carcinoma.
- Published in:
- Journal of Clinical Medicine, 2024, v. 13, n. 7, p. 2057, doi. 10.3390/jcm13072057
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- Publication type:
- Article
Transcriptional state dynamics lead to heterogeneity and adaptive tumor evolution in urothelial bladder carcinoma.
- Published in:
- Communications Biology, 2023, v. 6, n. 1, p. 1, doi. 10.1038/s42003-023-05668-3
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- Publication type:
- Article