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Classification of the plant-associated lifestyle of Pseudomonas strains using genome properties and machine learning.
- Published in:
- Scientific Reports, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41598-022-14913-4
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- Publication type:
- Article
Integration of heterogeneous molecular networks to unravel gene-regulation in Mycobacterium tuberculosis.
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- BMC Systems Biology, 2014, v. 8, n. 1, p. 111, doi. 10.1186/s12918-014-0111-5
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- Article
Regulation of Three Virulence Strategies of Mycobacterium tuberculosis: A Success Story.
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- International Journal of Molecular Sciences, 2018, v. 19, n. 2, p. 347, doi. 10.3390/ijms19020347
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- Article
Phenotype and multi-omics comparison of Staphylococcus and Streptococcus uncovers pathogenic traits and predicts zoonotic potential.
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- BMC Genomics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12864-021-07388-6
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- Publication type:
- Article
High-level integration of murine intestinal transcriptomics data highlights the importance of the complement system in mucosal homeostasis.
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- BMC Genomics, 2019, v. 20, p. 1, doi. 10.1186/s12864-019-6390-x
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- Article
The Empusa code generator and its application to GBOL, an extendable ontology for genome annotation.
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- Scientific Data, 2019, v. 6, n. 1, p. N.PAG, doi. 10.1038/s41597-019-0263-7
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- Article
Intraspecies characterization of bacteria via evolutionary modeling of protein domains.
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- Scientific Reports, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41598-022-21036-3
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- Publication type:
- Article
Consistency, Inconsistency, and Ambiguity of Metabolite Names in Biochemical Databases Used for Genome-Scale Metabolic Modelling.
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- Metabolites (2218-1989), 2019, v. 9, n. 2, p. 28, doi. 10.3390/metabo9020028
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- Publication type:
- Article
Combinatorial optimization of pathway, process and media for the production of p‐coumaric acid by Saccharomyces cerevisiae.
- Published in:
- Microbial Biotechnology, 2024, v. 17, n. 3, p. 1, doi. 10.1111/1751-7915.14424
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- Publication type:
- Article
Enzyme‐constrained models predict the dynamics of Saccharomyces cerevisiae growth in continuous, batch and fed‐batch bioreactors.
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- Microbial Biotechnology, 2022, v. 15, n. 5, p. 1434, doi. 10.1111/1751-7915.13995
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- Publication type:
- Article
Galactocerebroside biosynthesis pathways of Mycoplasma species: an antigen triggering Guillain–Barré–Stohl syndrome.
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- Microbial Biotechnology, 2021, v. 14, n. 3, p. 1201, doi. 10.1111/1751-7915.13794
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- Publication type:
- Article
Model‐driven design of a minimal medium for <italic>Akkermansia muciniphila</italic> confirms mucus adaptation.
- Published in:
- Microbial Biotechnology, 2018, v. 11, n. 3, p. 476, doi. 10.1111/1751-7915.13033
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- Publication type:
- Article
Correction to: Phenotype and multi-omics comparison of Staphylococcus and Streptococcus uncovers pathogenic traits and predicts zoonotic potential.
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- 2021
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- Correction Notice
Comparison of 432 Pseudomonas strains through integration of genomic, functional, metabolic and expression data.
- Published in:
- Scientific Reports, 2016, p. 38699, doi. 10.1038/srep38699
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- Article
Proteomic Analysis of a Syntrophic Coculture of Syntrophobacter fumaroxidans MPOB<sup>T</sup> and Geobacter sulfurreducens PCA<sup>T</sup>.
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- Frontiers in Microbiology, 2021, v. 12, p. 1, doi. 10.3389/fmicb.2021.708911
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- Publication type:
- Article
RDF2Graph a tool to recover, understand and validate the ontology of an RDF resource.
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- Journal of Biomedical Semantics, 2015, v. 6, p. 1, doi. 10.1186/s13326-015-0038-9
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- Publication type:
- Article
From the Environment to the Host: Re-Wiring of the Transcriptome of <i>Pseudomonas aeruginosa</i> from 22°C to 37°C.
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- PLoS ONE, 2014, v. 9, n. 2, p. 1, doi. 10.1371/journal.pone.0089941
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- Publication type:
- Article
A metabolic and physiological design study of Pseudomonas putida KT2440 capable of anaerobic respiration.
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- BMC Microbiology, 2021, v. 21, n. 1, p. 1, doi. 10.1186/s12866-020-02058-1
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- Publication type:
- Article
Screening and characterization of novel specific peptides targeting MDA-MB-231 claudin-low breast carcinoma by computeraided phage display methodologies.
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- BMC Cancer, 2016, v. 16, p. 1, doi. 10.1186/s12885-016-2937-2
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- Publication type:
- Article
Screening and characterization of novel specific peptides targeting MDA-MB-231 claudin-low breast carcinoma by computer-aided phage display methodologies.
- Published in:
- 2016
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- Publication type:
- journal article
Metabolic modeling of energy balances in Mycoplasma hyopneumoniae shows that pyruvate addition increases growth rate.
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- Biotechnology & Bioengineering, 2017, v. 114, n. 10, p. 2339, doi. 10.1002/bit.26347
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- Publication type:
- Article
Advances in experimental and computational methodologies for the study of microbial-surface interactions at different omics levels.
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- Frontiers in Microbiology, 2022, v. 13, p. 1, doi. 10.3389/fmicb.2022.1006946
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- Publication type:
- Article
SALARECON connects the Atlantic salmon genome to growth and feed efficiency.
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- PLoS Computational Biology, 2022, v. 18, n. 6, p. 1, doi. 10.1371/journal.pcbi.1010194
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- Article
Toxicological response of the model fungus Saccharomyces cerevisiae to different concentrations of commercial graphene nanoplatelets.
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- Scientific Reports, 2020, v. 10, n. 1, p. 1, doi. 10.1038/s41598-020-60101-7
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- Publication type:
- Article
Modeling the Metabolic State of Mycobacterium tuberculosis Upon Infection.
- Published in:
- Frontiers in Cellular & Infection Microbiology, 2018, v. 8, p. N.PAG, doi. 10.3389/fcimb.2018.00264
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- Publication type:
- Article
Geochemical and microbial community determinants of reductive dechlorination at a site biostimulated with glycerol.
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- Environmental Microbiology, 2017, v. 19, n. 3, p. 968, doi. 10.1111/1462-2920.13531
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- Publication type:
- Article
Analysis of the microbial gene landscape and transcriptome for aromatic pollutants and alkane degradation using a novel internally calibrated microarray system.
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- Environmental Microbiology, 2013, v. 15, n. 4, p. 1016, doi. 10.1111/j.1462-2920.2012.02752.x
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- Publication type:
- Article
Tailoring and optimizing fatty acid production by oleaginous yeasts through the systematic exploration of their physiological fitness.
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- Microbial Cell Factories, 2022, v. 21, n. 1, p. 1, doi. 10.1186/s12934-022-01956-5
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- Publication type:
- Article
Genome-scale metabolic modelling enables deciphering ethanol metabolism via the acrylate pathway in the propionate-producer Anaerotignum neopropionicum.
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- Microbial Cell Factories, 2022, v. 21, n. 1, p. 1, doi. 10.1186/s12934-022-01841-1
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- Publication type:
- Article
Production of indole by Corynebacterium glutamicum microbial cell factories for flavor and fragrance applications.
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- Microbial Cell Factories, 2022, v. 21, n. 1, p. 1, doi. 10.1186/s12934-022-01771-y
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- Publication type:
- Article
Aspergillus niger Secretes Citrate to Increase Iron Bioavailability.
- Published in:
- Frontiers in Microbiology, 2017, p. 1, doi. 10.3389/fmicb.2017.01424
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- Publication type:
- Article
In silico-guided engineering of Pseudomonas putida towards growth under micro-oxic conditions.
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- Microbial Cell Factories, 2019, v. 18, n. 1, p. N.PAG, doi. 10.1186/s12934-019-1227-5
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- Publication type:
- Article
A structured evaluation of genome-scale constraint-based modeling tools for microbial consortia.
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- PLoS Computational Biology, 2023, v. 19, n. 8, p. 1, doi. 10.1371/journal.pcbi.1011363
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- Article
Commonalities and Differences in the Transcriptional Response of the Model Fungus Saccharomyces cerevisiae to Different Commercial Graphene Oxide Materials.
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- Frontiers in Microbiology, 2020, p. N.PAG, doi. 10.3389/fmicb.2020.01943
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- Publication type:
- Article
Genome-scale metabolic modeling underscores the potential of Cutaneotrichosporon oleaginosus ATCC 20509 as a cell factory for biofuel production.
- Published in:
- Biotechnology for Biofuels, 2021, v. 14, n. 1, p. 1, doi. 10.1186/s13068-020-01838-1
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- Publication type:
- Article
Programmable bacterial catalysis – designing cells for biosynthesis of value-added compounds.
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- FEBS Letters, 2012, v. 586, n. 15, p. 2184, doi. 10.1016/j.febslet.2012.02.030
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- Article
SyNDI: synchronous network data integration framework.
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- BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2426-5
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- Publication type:
- Article
Questions, data and models underpinning metabolic engineering.
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- Frontiers in Systems Biology, 2022, v. 2, p. 1, doi. 10.3389/fsysb.2022.998048
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- Publication type:
- Article
Global Transcriptional Response of Aspergillus niger to Blocked Active Citrate Export through Deletion of the Exporter Gene.
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- Journal of Fungi, 2021, v. 7, n. 6, p. 1, doi. 10.3390/jof7060409
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- Article
The effect of prebiotic fortified infant formulas on microbiota composition and dynamics in early life.
- Published in:
- Scientific Reports, 2019, v. 9, n. 1, p. 1, doi. 10.1038/s41598-018-38268-x
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- Publication type:
- Article
Modulating D-amino acid oxidase (DAAO) substrate specificity through facilitated solvent access.
- Published in:
- PLoS ONE, 2018, v. 13, n. 6, p. 1, doi. 10.1371/journal.pone.0198990
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- Publication type:
- Article
Computational protein design with electrostatic focusing: Experimental characterization of a conditionally folded helical domain with a reduced amino acid alphabet.
- Published in:
- Biotechnology Journal, 2013, v. 8, n. 7, p. 855, doi. 10.1002/biot.201200380
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- Publication type:
- Article
Network analysis of temporal functionalities of the gut induced by perturbations in new-born piglets.
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- BMC Genomics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12864-015-1733-8
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- Publication type:
- Article
Comprehensive insights into transcriptional adaptation of intracellular mycobacteria by microbe-enriched dual RNA sequencing.
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- BMC Genomics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12864-014-1197-2
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- Publication type:
- Article
SAPP: functional genome annotation and analysis through a semantic framework using FAIR principles.
- Published in:
- Bioinformatics, 2018, v. 34, n. 8, p. 1401, doi. 10.1093/bioinformatics/btx767
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- Publication type:
- Article
Model-driven design allows growth of Mycoplasma pneumoniae on serum-free media.
- Published in:
- NPJ Systems Biology & Applications, 2020, v. 6, n. 1, p. N.PAG, doi. 10.1038/s41540-020-00153-7
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- Publication type:
- Article
Low Toxicological Impact of Commercial Pristine Multi-Walled Carbon Nanotubes on the Yeast Saccharomyces cerevisiae.
- Published in:
- Nanomaterials (2079-4991), 2021, v. 11, n. 9, p. 2272, doi. 10.3390/nano11092272
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- Publication type:
- Article
Comparative proteomics of Geobacter sulfurreducens PCA<sup>T</sup> in response to acetate, formate and/or hydrogen as electron donor.
- Published in:
- Environmental Microbiology, 2021, v. 23, n. 1, p. 299, doi. 10.1111/1462-2920.15311
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- Publication type:
- Article
A Constraint-Based Model Analysis of Enterocyte Mitochondrial Adaptation to Dietary Interventions of Lipid Type and Lipid Load.
- Published in:
- Frontiers in Physiology, 2018, p. 1, doi. 10.3389/fphys.2018.00749
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- Publication type:
- Article
Multi-Level Integration of Environmentally Perturbed Internal Phenotypes Reveals Key Points of Connectivity between Them.
- Published in:
- Frontiers in Physiology, 2017, p. 1, doi. 10.3389/fphys.2017.00388
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- Publication type:
- Article