Works by Su, Andrew I

Results: 76

A Gene Wiki for Community Annotation of Gene Function.

Published in:

PLoS Biology, 2008, v. 6, n. 7, p. e175, doi. 10.1371/journal.pbio.0060175

By:

Huss, III, Jon W.;
Orozco, Camilo;
Goodale, James;
Wu, Chunlei;
Batalov, Serge;
Vickers, Tim J.;
Valafar, Faramarz;
Su, Andrew I.

Publication type:

Article

Use of a Dense Single Nucleotide Polymorphism Map for In Silico Mapping in the Mouse.

Published in:

PLoS Biology, 2004, v. 2, n. 12, p. 2159, doi. 10.1371/journal.pbio.0020393

By:

Pletcher, Mathew T.;
McClurg, Philip;
Batalov, Serge;
Su, Andrew I.;
Barnes, S. Whitney;
Lagler, Erica;
Korstanje, Ron;
Xiaosong Wang;
Nusskern, Deborah;
Bogue, Molly A.;
Mural, Richard J.;
Paigen, Beverly;
Wiltshire, Tim

Publication type:

Article

Use of a Dense Single Nucleotide Polymorphism Map for In Silico Mapping in the Mouse.

Published in:

PLoS Biology, 2004, v. 2, n. 11, p. 1, doi. 10.1371/journal.pbio.0020393

By:

Pletcher, Mathew T;
McClurg, Philip;
Batalov, Serge;
Su, Andrew I;
Barnes, S. Whitney;
Lagler, Erica;
Korstanje, Ron;
Wang, Xiaosong;
Nusskern, Deborah;
Bogue, Molly A;
Mural, Richard J;
Paigen, Beverly;
Wiltshire, Tim

Publication type:

Article

Gene Expression Evolves Faster in Narrowly Than in Broadly Expressed Mammalian Genes.

Published in:

Molecular Biology & Evolution, 2005, v. 22, n. 10, p. 2113, doi. 10.1093/molbev/msi206

By:

Jing Yang;
Su, Andrew I.;
Wen-Hsiung Li

Publication type:

Article

Functional Annotation of the Transcriptome of the Pig, Sus scrofa , Based Upon Network Analysis of an RNAseq Transcriptional Atlas.

Published in:

Frontiers in Genetics, 2020, v. 10, p. 1, doi. 10.3389/fgene.2019.01355

By:

Summers, Kim M.;
Bush, Stephen J.;
Wu, Chunlei;
Su, Andrew I.;
Muriuki, Charity;
Clark, Emily L.;
Finlayson, Heather A.;
Eory, Lel;
Waddell, Lindsey A.;
Talbot, Richard;
Archibald, Alan L.;
Hume, David A.

Publication type:

Article

Functional expression of dental plaque microbiota.

Published in:

Frontiers in Cellular & Infection Microbiology, 2014, p. 1, doi. 10.3389/fcimb.2014.00108

By:

Peterson, Scott N.;
Meissner, Tobias;
Su, Andrew I.;
Snesrud, Erik;
Ong, Ana C.;
Schork, Nicholas J.;
Bretz, Walter A.;
Banas, Jeff;
Iebba, Valerio

Publication type:

Article

A task-based approach for Gene Ontology evaluation.

Published in:

Journal of Biomedical Semantics, 2013, v. 4, n. Suppl 1, p. 1, doi. 10.1186/2041-1480-4-S1-S4

By:

Clarke, Erik L.;
Loguercio, Salvatore;
Good, Benjamin M.;
Su, Andrew I.

Publication type:

Article

Linking genes to diseases with a SNPedia-Gene Wiki mashup.

Published in:

Journal of Biomedical Semantics, 2012, v. 3, n. Suppl 1, p. 1, doi. 10.1186/2041-1480-3-S1-S6

By:

Good, Benjamin M.;
Clarke, Erik L.;
Loguercio, Salvatore;
Su, Andrew I.

Publication type:

Article

BioThings Explorer: a query engine for a federated knowledge graph of biomedical APIs.

Published in:

Bioinformatics, 2023, v. 39, n. 9, p. 1, doi. 10.1093/bioinformatics/btad570

By:

Callaghan, Jackson;
Xu, Colleen H;
Xin, Jiwen;
Cano, Marco Alvarado;
Riutta, Anders;
Zhou, Eric;
Juneja, Rohan;
Yao, Yao;
Narayan, Madhumita;
Hanspers, Kristina;
Agrawal, Ayushi;
Pico, Alexander R;
Wu, Chunlei;
Su, Andrew I

Publication type:

Article

Design and application of a knowledge network for automatic prioritization of drug mechanisms.

Published in:

Bioinformatics, 2022, v. 38, n. 10, p. 2880, doi. 10.1093/bioinformatics/btac205

By:

Mayers, Michael;
Tu, Roger;
Steinecke, Dylan;
Li, Tong Shu;
Queralt-Rosinach, Núria;
Su, Andrew I

Publication type:

Article

BioThings SDK: a toolkit for building high-performance data APIs in biomedical research.

Published in:

Bioinformatics, 2022, v. 38, n. 7, p. 2077, doi. 10.1093/bioinformatics/btac017

By:

Lelong, Sebastien;
Zhou, Xinghua;
Afrasiabi, Cyrus;
Qian, Zhongchao;
Cano, Marco Alvarado;
Tsueng, Ginger;
Xin, Jiwen;
Mullen, Julia;
Yao, Yao;
Avila, Ricardo;
Taylor, Greg;
Su, Andrew I;
Wu, Chunlei

Publication type:

Article

BioGPS and MyGene.info: organizing online, gene-centric information.

Published in:

Nucleic Acids Research, 2013, v. 41, p. D561, doi. 10.1093/nar/gks1114

By:

Chunlei Wu;
MacLeod, Ian;
Su, Andrew I.

Publication type:

Article

The Gene Wiki in 2011: community intelligence applied to human gene annotation.

Published in:

Nucleic Acids Research, 2012, p. D1255, doi. 10.1093/nar/gkr925

By:

Good, Benjamin M.;
Clarke, Erik L.;
de Alfaro, Luca;
Su, Andrew I.

Publication type:

Article

The Gene Wiki: community intelligence applied to human gene annotation.

Published in:

Nucleic Acids Research, 2010, v. 38, p. D633, doi. 10.1093/nar/gkp760

By:

Huss III, Jon W.;
Lindenbaum, Pierre;
Martone, Michael;
Roberts, Donabel;
Pizarro, Angel;
Valafar, Faramarz;
Hogenesch, John B.;
Su, Andrew I.

Publication type:

Article

Advancing computational biology and bioinformatics research through open innovation competitions.

Published in:

PLoS ONE, 2019, v. 14, n. 9, p. 1, doi. 10.1371/journal.pone.0222165

By:

Blasco, Andrea;
Endres, Michael G.;
Sergeev, Rinat A.;
Jonchhe, Anup;
Macaluso, N. J. Maximilian;
Narayan, Rajiv;
Natoli, Ted;
Paik, Jin H.;
Briney, Bryan;
Wu, Chunlei;
Su, Andrew I.;
Subramanian, Aravind;
Lakhani, Karim R.

Publication type:

Article

Docking molecules by families to increase the diversity of hits in database screens: Computational strategy and experimental evaluation.

Published in:

Proteins, 2001, v. 42, n. 2, p. 279, doi. 10.1002/1097-0134(20010201)42:2<279::AID-PROT150>3.0.CO;2-U

By:

Su, Andrew I.;
Lorber, David M.;
Weston, G. Scott;
Baase, Walter A.;
Matthews, Brian W.;
Shoichet, Brian K.

Publication type:

Article

Uncovering regulatory pathways that affect hematopoietic stem cell function using 'genetical genomics'.

Published in:

Nature Genetics, 2005, v. 37, n. 3, p. 225, doi. 10.1038/ng1497

By:

Bystrykh, Leonid;
Weersing, Ellen;
Dontje, Bert;
Sutton, Sue;
Pletcher, Mathew T;
Wiltshire, Tim;
Su, Andrew I;
Vellenga, Edo;
Wang, Jintao;
Manly, Kenneth F;
Lu, Lu;
Chesler, Elissa J;
Alberts, Rudi;
Jansen, Ritsert C;
Williams, Robert W;
Cooke, Michael P;
de Haan, Gerald

Publication type:

Article

Genetical Genomics: Spotlight on QTL Hotspots.

Published in:

2008

By:

Breitling, Rainer;
Yang Li;
Tesson, Bruno M.;
Jingyuan Fu;
Chunlei Wu;
Wiltshire, Tim;
Gerrits, Alice;
Bystrykh, Leonid V.;
de Haan, Gerald;
Su, Andrew I.;
Ritsert C. Jansen

Publication type:

Opinion

Gene Set Enrichment in eQTL Data Identifies Novel Annotations and Pathway Regulators.

Published in:

PLoS Genetics, 2008, v. 4, n. 5, p. 1, doi. 10.1371/journal.pgen.1000070

By:

Chunlei Wu;
Delano, David L.;
Mitro, Nico;
Su, Stephen V.;
Janes, Jeff;
McClurg, Phillip;
Batalov, Serge;
Welch, Genevieve L.;
Jie Zhang;
Orth, Anthony P.;
Walker, John R.;
Glynne, Richard J.;
Cooke, Michael P.;
Takahashi, Joseph S.;
Shimomura, Kazuhiro;
Kohsaka, Akira;
Bass, Joseph;
Saez, Enrique;
Wiltshire, Tim;
Su, Andrew I.

Publication type:

Article

Multi-Omics Database Analysis of Aminoacyl-tRNA Synthetases in Cancer.

Published in:

Genes, 2020, v. 11, n. 11, p. 1384, doi. 10.3390/genes11111384

By:

Wang, Justin;
Vallee, Ingrid;
Dutta, Aditi;
Wang, Yu;
Mo, Zhongying;
Liu, Ze;
Cui, Haissi;
Su, Andrew I.;
Yang, Xiang-Lei

Publication type:

Article

The Implicitome: A Resource for Rationalizing Gene-Disease Associations.

Published in:

PLoS ONE, 2016, v. 11, n. 2, p. 1, doi. 10.1371/journal.pone.0149621

By:

Hettne, Kristina M.;
Thompson, Mark;
van Haagen, Herman H. H. B. M.;
van der Horst, Eelke;
Kaliyaperumal, Rajaram;
Mina, Eleni;
Tatum, Zuotian;
Laros, Jeroen F. J.;
van Mulligen, Erik M.;
Schuemie, Martijn;
Aten, Emmelien;
Li, Tong Shu;
Bruskiewich, Richard;
Good, Benjamin M.;
Su, Andrew I.;
Kors, Jan A.;
den Dunnen, Johan;
van Ommen, Gert-Jan B.;
Roos, Marco;
‘t Hoen, Peter A.C.

Publication type:

Article

Time-resolved evaluation of compound repositioning predictions on a text-mined knowledge network.

Published in:

BMC Bioinformatics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12859-019-3297-0

By:

Mayers, Michael;
Li, Tong Shu;
Queralt-Rosinach, Núria;
Su, Andrew I.

Publication type:

Article

Front Cover: Metaproteomics of Colonic Microbiota Unveils Discrete Protein Functions among Colitic Mice and Control Groups.

Published in:

Proteomics, 2018, v. 18, n. 3/4, p. 1, doi. 10.1002/pmic.201870031

By:

Moon, Clara;
Stupp, Gregory S.;
Su, Andrew I.;
Wolan, Dennis W.

Publication type:

Article

Metaproteomics of Colonic Microbiota Unveils Discrete Protein Functions among Colitic Mice and Control Groups.

Published in:

Proteomics, 2018, v. 18, n. 3/4, p. 1, doi. 10.1002/pmic.201700391

By:

Moon, Clara;
Stupp, Gregory S.;
Su, Andrew I.;
Wolan, Dennis W.

Publication type:

Article

Increased DNA Methylation and Reduced Expression of Transcription Factors in Human Osteoarthritis Cartilage.

Published in:

Arthritis & Rheumatology, 2016, v. 68, n. 8, p. 1876, doi. 10.1002/art.39643

By:

Alvarez‐Garcia, Oscar;
Fisch, Kathleen M.;
Wineinger, Nathan E.;
Akagi, Ryuichiro;
Saito, Masahiko;
Sasho, Takahisa;
Su, Andrew I.;
Lotz, Martin K.

Publication type:

Article

Integration of extracellular RNA profiling data using metadata, biomedical ontologies and Linked Data technologies.

Published in:

Journal of Extracellular Vesicles, 2015, v. 4, p. 1, doi. 10.3402/jev.v4.27497

By:

Subramanian, Sai Lakshmi;
Kitchen, Robert R.;
Alexander, Roger;
Carter, Bob S.;
Cheung, Kei-Hoi;
Laurent, Louise C.;
Pico, Alexander;
Roberts, Lewis R.;
Roth, Matthew E.;
Rozowsky, Joel S.;
Su, Andrew I.;
Gerstein, Mark B.;
Milosavljevic, Aleksandar

Publication type:

Article

Crowdsourcing in biomedicine: challenges and opportunities.

Published in:

Briefings in Bioinformatics, 2016, v. 17, n. 1, p. 23, doi. 10.1093/bib/bbv021

By:

Khare, Ritu;
Good, Benjamin M.;
Leaman, Robert;
Su, Andrew I.;
Zhiyong Lu

Publication type:

Article

Association study between drug prescriptions and Alzheimer's disease claims in a commercial insurance database.

Published in:

Alzheimer's Research & Therapy, 2023, v. 15, n. 1, p. 1, doi. 10.1186/s13195-023-01255-0

By:

Hu, Eric;
Li, Tong Shu;
Wineinger, Nathan E.;
Su, Andrew I.

Publication type:

Article

FoxO transcription factors modulate autophagy and proteoglycan 4 in cartilage homeostasis and osteoarthritis.

Published in:

Science Translational Medicine, 2018, v. 10, n. 428, p. 1, doi. 10.1126/scitranslmed.aan0746

By:

Matsuzaki, Tokio;
Alvarez-Garcia, Oscar;
Mokuda, Sho;
Nagira, Keita;
Olmer, Merissa;
Gamini, Ramya;
Miyata, Kohei;
Akasaki, Yukio;
Su, Andrew I.;
Asahara, Hiroshi;
Lotz, Martin K.

Publication type:

Article

Cross-linking BioThings APIs through JSON-LD to facilitate knowledge exploration.

Published in:

BMC Bioinformatics, 2018, v. 19, p. 1, doi. 10.1186/s12859-018-2041-5

By:

Xin, Jiwen;
Afrasiabi, Cyrus;
Lelong, Sebastien;
Adesara, Julee;
Tsueng, Ginger;
Su, Andrew I.;
Wu, Chunlei

Publication type:

Article

Applying citizen science to gene, drug and disease relationship extraction from biomedical abstracts.

Published in:

Bioinformatics, 2020, v. 36, n. 4, p. 1226, doi. 10.1093/bioinformatics/btz678

By:

Tsueng, Ginger;
Nanis, Max;
Fouquier, Jennifer T;
Mayers, Michael;
Good, Benjamin M;
Su, Andrew I

Publication type:

Article

Branch: an interactive, web-based tool for testing hypotheses and developing predictive models.

Published in:

Bioinformatics, 2016, v. 32, n. 13, p. 2072, doi. 10.1093/bioinformatics/btw117

By:

Gangavarapu, Karthik;
Babji, Vyshakh;
Meißner, Tobias;
Su, Andrew I.;
Good, Benjamin M.

Publication type:

Article

Omics Pipe: a community-based framework for reproducible multi-omics data analysis.

Published in:

2015

By:

Fisch, Kathleen M.;
Meiβner, Tobias;
Gioia, Louis;
Ducom, Jean-Christophe;
Carland, Tristan M.;
Loguercio, Salvatore;
Su, Andrew I.

Publication type:

Product Review

Crowdsourcing for bioinformatics.

Published in:

Bioinformatics, 2013, v. 29, n. 16, p. 1925, doi. 10.1093/bioinformatics/btt333

By:

Good, Benjamin M.;
Su, Andrew I.

Publication type:

Article

The evolution of dynamin to regulate clathrin-mediated endocytosis.

Published in:

BioEssays, 2012, v. 34, n. 8, p. 643, doi. 10.1002/bies.201200033

By:

Liu, Ya-Wen;
Su, Andrew I.;
Schmid, Sandra L.

Publication type:

Article

HA novel approach to investigate tissue-specific trinucleotide repeat instability.

Published in:

BMC Systems Biology, 2010, v. 4, p. 29, doi. 10.1186/1752-0509-4-29

By:

Jong-Min Lee;
Jie Zhang;
Su, Andrew I.;
Walker, John R.;
Wiltshire, Tim;
Kihwa Kang;
Dragileva, Ella;
Gillis, Tammy;
Lopez, Edith T.;
Boily, Marie-Josee;
Cyr, Michel;
Kohane, Isaac;
Gusella, James F.;
MacDonald, Marcy E.;
Wheeler, Vanessa C.

Publication type:

Article

A protocol for adding knowledge to Wikidata: aligning resources on human coronaviruses.

Published in:

BMC Biology, 2021, v. 19, n. 1, p. 1, doi. 10.1186/s12915-020-00940-y

By:

Waagmeester, Andra;
Willighagen, Egon L.;
Su, Andrew I.;
Kutmon, Martina;
Gayo, Jose Emilio Labra;
Fernández-Álvarez, Daniel;
Groom, Quentin;
Schaap, Peter J.;
Verhagen, Lisa M.;
Koehorst, Jasper J.

Publication type:

Article

Perspectives on tracking data reuse across biodata resources.

Published in:

Bioinformatics Advances, 2024, v. 4, n. 1, p. 1, doi. 10.1093/bioadv/vbae057

By:

Ross, Karen E;
Bastian, Frederic B;
Buys, Matt;
Cook, Charles E;
D'Eustachio, Peter;
Harrison, Melissa;
Hermjakob, Henning;
Li, Donghui;
Lord, Phillip;
Natale, Darren A;
Peters, Bjoern;
Sternberg, Paul W;
Su, Andrew I;
Thakur, Matthew;
Thomas, Paul D;
Bateman, Alex;
Consortium, and the UniProt

Publication type:

Article

Extending gene ontology in the context of extracellular RNA and vesicle communication.

Published in:

Journal of Biomedical Semantics, 2016, v. 7, p. 1, doi. 10.1186/s13326-016-0061-5

By:

Kei-Hoi Cheung;
Alexander, Roger;
Galas, David;
Gerstein, Mark B.;
Rozowsky, Joel;
Kitchen, Robert R.;
Lötvall, Jan;
Patel, Tushar;
Procaccini, Dena C.;
Quesenberry, Peter;
Raffai, Robert L.;
Su, Andrew I.;
Théry, Clotilde;
Vickers, Kasey;
Wauben, Marca H. M.;
Laurent, Louise C.;
Samuel, Monisha;
Anand, Sushma;
Gangoda, Lahiru;
Hill, Andrew F.

Publication type:

Article

The influence of cholesterol and lipid metabolism on host cell structure and hepatitis C virus replication.

Published in:

Biochemistry & Cell Biology, 2006, v. 84, n. 1, p. 67, doi. 10.1139/O05-149

By:

Sagan, Selena M.;
Rouleau, Yanouchka;
Leggiadro, Cynthia;
Supekova, Lubica;
Schultz, Peter G.;
Su, Andrew I.;
Pezacki, John Paul

Publication type:

Article

A genome-wide survey of mutations in the Jurkat cell line.

Published in:

2018

By:

Gioia, Louis;
Siddique, Azeem;
Head, Steven R.;
Salomon, Daniel R.;
Su, Andrew I.

Publication type:

Abstract

Comparative analysis of haplotype association mapping algorithms.

Published in:

BMC Bioinformatics, 2006, v. 7, p. 61, doi. 10.1186/1471-2105-7-61

By:

McClurg, Phillip;
Pletcher, Mathew T;
Wiltshire, Tim;
Su, Andrew I

Publication type:

Article

Ten Simple Rules for Cultivating Open Science and Collaborative R&D.

Published in:

2013

By:

Masum, Hassan;
Rao, Aarthi;
Good, Benjamin M.;
Todd, Matthew H.;
Edwards, Aled M.;
Chan, Leslie;
Bunin, Barry A.;
Su, Andrew I.;
Thomas, Zakir;
Bourne, Philip E.

Publication type:

Editorial

BioGPS: building your own mash-up of gene annotations and expression profiles.

Published in:

Nucleic Acids Research, 2016, v. 44, p. D313, doi. 10.1093/nar/gkv1104

By:

Chunlei Wu;
Xuefeng Jin;
Tsueng, Ginger;
Afrasiabi, Cyrus;
Su, Andrew I.

Publication type:

Article

High-performance web services for querying gene and variant annotation.

Published in:

Genome Biology, 2016, v. 17, p. 1, doi. 10.1186/s13059-016-0953-9

By:

Jiwen Xin;
Mark, Adam;
Afrasiabi, Cyrus;
Tsueng, Ginger;
Juchler, Moritz;
Gopal, Nikhil;
Stupp, Gregory S.;
Putman, Timothy E.;
Ainscough, Benjamin J.;
Griffith, Obi L.;
Torkamani, Ali;
Whetzel, Patricia L.;
Mungall, Christopher J.;
Mooney, Sean D.;
Su, Andrew I.;
Chunlei Wu

Publication type:

Article

Organizing knowledge to enable personalization of medicine in cancer.

Published in:

Genome Biology, 2014, v. 15, n. 7, p. 438, doi. 10.1186/s13059-014-0438-7

By:

Good, Benjamin M.;
Ainscough, Benjamin J.;
McMichael, Josh F.;
Su, Andrew I.;
Griffith, Obi L.

Publication type:

Article

Games with a scientific purpose.

Published in:

Genome Biology, 2011, v. 12, n. 12, p. 135, doi. 10.1186/gb-2011-12-12-135

By:

Good, Benjamin M.;
Su, Andrew I.

Publication type:

Article

Genome-Wide Haplotype Association Mapping in Mice Identifies a Genetic Variant in CER1 Associated With BMD and Fracture in Southern Chinese Women.

Published in:

Journal of Bone & Mineral Research, 2009, v. 24, n. 6, p. 1013, doi. 10.1359/jbmr.081258

By:

Tang, Paul L. F.;
Ching-Lung Cheung;
Sham, Pak C.;
McClurg, Philip;
Bob Lee;
Shut-Yan Chan;
Smith, David K.;
Tanner, Julian A.;
Su, Andrew I.;
Cheah, Kathryn S. E.;
Kung, Annie W. C.;
You-Qiang Song

Publication type:

Article

Schema Playground: a tool for authoring, extending, and using metadata schemas to improve FAIRness of biomedical data.

Published in:

BMC Bioinformatics, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s12859-023-05258-4

By:

Cano, Marco A.;
Tsueng, Ginger;
Zhou, Xinghua;
Xin, Jiwen;
Hughes, Laura D.;
Mullen, Julia L.;
Su, Andrew I.;
Wu, Chunlei

Publication type:

Article

Structured reviews for data and knowledge-driven research.

Published in:

Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baaa015

By:

Queralt-Rosinach, Núria;
Stupp, Gregory S;
Li, Tong Shu;
Mayers, Michael;
Hoatlin, Maureen E;
Might, Matthew;
Good, Benjamin M;
Su, Andrew I

Publication type:

Article