Works matching AU Su, Andrew

Results: 88

Branch: an interactive, web-based tool for testing hypotheses and developing predictive models.

Published in:

Bioinformatics, 2016, v. 32, n. 13, p. 2072, doi. 10.1093/bioinformatics/btw117

By:

Gangavarapu, Karthik;
Babji, Vyshakh;
Meißner, Tobias;
Su, Andrew I.;
Good, Benjamin M.

Publication type:

Article

Omics Pipe: a community-based framework for reproducible multi-omics data analysis.

Published in:

2015

By:

Fisch, Kathleen M.;
Meiβner, Tobias;
Gioia, Louis;
Ducom, Jean-Christophe;
Carland, Tristan M.;
Loguercio, Salvatore;
Su, Andrew I.

Publication type:

Product Review

Crowdsourcing for bioinformatics.

Published in:

Bioinformatics, 2013, v. 29, n. 16, p. 1925, doi. 10.1093/bioinformatics/btt333

By:

Good, Benjamin M.;
Su, Andrew I.

Publication type:

Article

Wikidata as a linked-data hub for Biodiversity data.

Published in:

2019

By:

Waagmeester, Andra;
Schriml, Lynn;
Su, Andrew

Publication type:

Abstract

The single-cell spatial landscape of stage III colorectal cancers.

Published in:

NPJ Precision Oncology, 2025, v. 9, n. 1, p. 1, doi. 10.1038/s41698-025-00853-5

By:

Su, Andrew;
Lee, HoJoon;
Tran, Minh;
dela Cruz, Richard C.;
Sathe, Anuja;
Bai, Xiangqi;
Wichmann, Ignacio;
Pflieger, Lance;
Moulton, Bryce;
Barker, Tyler;
Haslem, Derrick;
Jones, David;
Nadauld, Lincoln;
Nguyen, Quan;
Ji, Hanlee P.;
Rhodes, Terence

Publication type:

Article

A spatial transcriptomic signature of 26 genes resolved at single-cell resolution characterizes high-risk gastric cancer precursors.

Published in:

NPJ Precision Oncology, 2025, v. 9, n. 1, p. 1, doi. 10.1038/s41698-025-00816-w

By:

Huang, Robert J.;
Wichmann, Ignacio A.;
Su, Andrew;
Sathe, Anuja;
Shum, Miranda V.;
Grimes, Susan M.;
Meka, Rithika;
Almeda, Alison;
Bai, Xiangqi;
Shen, Jeanne;
Nguyen, Quan;
Luo, Ingrid;
Han, Summer S.;
Amieva, Manuel R.;
Hwang, Joo Ha;
Ji, Hanlee P.

Publication type:

Article

Position β57 of I-A<sup>g7</sup> controls early anti-insulin responses inNOD mice, linking an MHC susceptibility allele to type 1 diabetes onset.

Published in:

Science Immunology, 2019, v. 4, n. 38, p. 1, doi. 10.1126/sciimmunol.aaw6329

By:

Gioia, Louis;
Holt, Marie;
Costanzo, Anne;
Sharma, Siddhartha;
Abe, Brian;
Kain, Lisa;
Nakayama, Maki;
Xiaoxiao Wan;
Su, Andrew;
Mathews, Clayton;
Yi-Guang Chen;
Unanue, Emil;
Teyton, Luc

Publication type:

Article

Multi-Omics Database Analysis of Aminoacyl-tRNA Synthetases in Cancer.

Published in:

Genes, 2020, v. 11, n. 11, p. 1384, doi. 10.3390/genes11111384

By:

Wang, Justin;
Vallee, Ingrid;
Dutta, Aditi;
Wang, Yu;
Mo, Zhongying;
Liu, Ze;
Cui, Haissi;
Su, Andrew I.;
Yang, Xiang-Lei

Publication type:

Article

OncoRep: an n-of-1 reporting tool to support genome-guided treatment for breast cancer patients using RNA-sequencing.

Published in:

BMC Medical Genomics, 2015, v. 8, n. 1, p. 1, doi. 10.1186/s12920-015-0095-z

By:

Meißner, Tobias;
Fisch, Kathleen M.;
Gioia, Louis;
Su, Andrew I.

Publication type:

Article

Reply to “Normalization procedures and detection of linkage signal in genetical-genomics experiments”.

Published in:

2006

By:

Chesler, Elissa J.;
Bystrykh, Leonid;
de Haan, Gerald;
Cooke, Michael P.;
Su, Andrew;
Manly, Kenneth F.;
Williams, Robert W.

Publication type:

Letter

Uncovering regulatory pathways that affect hematopoietic stem cell function using 'genetical genomics'.

Published in:

Nature Genetics, 2005, v. 37, n. 3, p. 225, doi. 10.1038/ng1497

By:

Bystrykh, Leonid;
Weersing, Ellen;
Dontje, Bert;
Sutton, Sue;
Pletcher, Mathew T;
Wiltshire, Tim;
Su, Andrew I;
Vellenga, Edo;
Wang, Jintao;
Manly, Kenneth F;
Lu, Lu;
Chesler, Elissa J;
Alberts, Rudi;
Jansen, Ritsert C;
Williams, Robert W;
Cooke, Michael P;
de Haan, Gerald

Publication type:

Article

Schema Playground: a tool for authoring, extending, and using metadata schemas to improve FAIRness of biomedical data.

Published in:

BMC Bioinformatics, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s12859-023-05258-4

By:

Cano, Marco A.;
Tsueng, Ginger;
Zhou, Xinghua;
Xin, Jiwen;
Hughes, Laura D.;
Mullen, Julia L.;
Su, Andrew I.;
Wu, Chunlei

Publication type:

Article

Increased DNA Methylation and Reduced Expression of Transcription Factors in Human Osteoarthritis Cartilage.

Published in:

Arthritis & Rheumatology, 2016, v. 68, n. 8, p. 1876, doi. 10.1002/art.39643

By:

Alvarez‐Garcia, Oscar;
Fisch, Kathleen M.;
Wineinger, Nathan E.;
Akagi, Ryuichiro;
Saito, Masahiko;
Sasho, Takahisa;
Su, Andrew I.;
Lotz, Martin K.

Publication type:

Article

Identification of Regulatory Elements That Control PPARγ Expression in Adipocyte Progenitors.

Published in:

PLoS ONE, 2013, v. 8, n. 8, p. 1, doi. 10.1371/journal.pone.0072511

By:

Chou, Wen-Ling;
Galmozzi, Andrea;
Partida, David;
Kwan, Kevin;
Yeung, Hui;
Su, Andrew I.;
Saez, Enrique

Publication type:

Article

Dizeez: An Online Game for Human Gene-Disease Annotation.

Published in:

PLoS ONE, 2013, v. 8, n. 8, p. 1, doi. 10.1371/journal.pone.0071171

By:

Loguercio, Salvatore;
Good, Benjamin M.;
Su, Andrew I.

Publication type:

Article

CAFET Algorithm Reveals Wnt/PCP Signature in Lung Squamous Cell Carcinoma.

Published in:

PLoS ONE, 2011, v. 6, n. 10, p. 1, doi. 10.1371/journal.pone.0025807

By:

Yue Hu;
Galkin, Anna V.;
Chunlei Wu;
Reddy, Venkateshwar;
Su, Andrew I.

Publication type:

Article

Phenotypic Characterization of a Genetically Diverse Panel of Mice for Behavioral Despair and Anxiety.

Published in:

PLoS ONE, 2010, v. 5, n. 12, p. 1, doi. 10.1371/journal.pone.0014458

By:

Miller, Brooke H.;
Schultz, Laura E.;
Gulati, Anisha;
Su, Andrew I.;
Pletcher, Mathew T.

Publication type:

Article

Integrative Analysis of Low- and High-Resolution eQTL.

Published in:

PLoS ONE, 2010, v. 5, n. 11, p. 1, doi. 10.1371/journal.pone.0013920

By:

Loguercio, Salvatore;
Overall, Rupert W.;
Michaelson, Jacob J.;
Wiltshire, Tim;
Pletcher, Mathew T.;
Miller, Brooke H.;
Walker, John R.;
Kempermann, Gerd;
Su, Andrew I.;
Beyer, Andreas

Publication type:

Article

A Common and Unstable Copy Number Variant Is Associated with Differences in GIo1 Expression and Anxiety-Like Behavior.

Published in:

PLoS ONE, 2009, v. 4, n. 3, p. 1, doi. 10.1371/journal.pone.0004649

By:

Williams IV, Richard;
Lim, Jackie E.;
Harr, Bettina;
Wing, Claudia;
Walters, Ryan;
Distler, Margaret G.;
Teschke, Meike;
Chunlei Wu;
Wiltshire, Tim;
Su, Andrew I.;
Sokoloff, Greta;
Tarantino, Lisa M.;
Borevitz, Justin O.;
Palmer, Abraham A.

Publication type:

Article

State-level response to gabapentin misuse in the United States: Implications and future direction.

Published in:

American Journal of Health-System Pharmacy, 2022, v. 79, n. 9, p. e143, doi. 10.1093/ajhp/zxab486

By:

Karavolis, Zoe A;
Su, Andrew B;
Peckham, Alyssa M

Publication type:

Article

The Effect of Tooth Loss on Craniofacial Morphology.

Published in:

FASEB Journal, 2021, v. 35, p. N.PAG, doi. 10.1096/fasebj.2021.35.S1.03825

By:

Su, Andrew;
Mitchell, D.;
Menegaz, Rachel

Publication type:

Article

A gene expression atlas of the domestic pig.

Published in:

BMC Biology, 2012, v. 10, n. 1, p. 90, doi. 10.1186/1741-7007-10-90

By:

Freeman, Tom C.;
Ivens, Alasdair;
Baillie, J. Kenneth;
Beraldi, Dario;
Bennett, Mark W.;
Dorward, David;
Downing, Alison;
Fairbaim, Lynsey;
Kapetanovic, Ronan;
Raza, Sobia;
Tomoiu, Andru;
Alberio, Ramiro;
Wu, Chunlei;
Su, Andrew I.;
Summers, Kim M.;
Tuggle, Christopher K.;
Archibald, Alan L.;
Hume, David A.

Publication type:

Article

Clock Gene Wikis Available: Join the "Long Tail".

Published in:

2008

By:

Hogenesch, John B.;
Su, Andrew I.

Publication type:

Letter

Functional expression of dental plaque microbiota.

Published in:

Frontiers in Cellular & Infection Microbiology, 2014, p. 1, doi. 10.3389/fcimb.2014.00108

By:

Peterson, Scott N.;
Meissner, Tobias;
Su, Andrew I.;
Snesrud, Erik;
Ong, Ana C.;
Schork, Nicholas J.;
Bretz, Walter A.;
Banas, Jeff;
Iebba, Valerio

Publication type:

Article

Extending gene ontology in the context of extracellular RNA and vesicle communication.

Published in:

Journal of Biomedical Semantics, 2016, v. 7, p. 1, doi. 10.1186/s13326-016-0061-5

By:

Kei-Hoi Cheung;
Alexander, Roger;
Galas, David;
Gerstein, Mark B.;
Rozowsky, Joel;
Kitchen, Robert R.;
Lötvall, Jan;
Patel, Tushar;
Procaccini, Dena C.;
Quesenberry, Peter;
Raffai, Robert L.;
Su, Andrew I.;
Théry, Clotilde;
Vickers, Kasey;
Wauben, Marca H. M.;
Laurent, Louise C.;
Samuel, Monisha;
Anand, Sushma;
Gangoda, Lahiru;
Hill, Andrew F.

Publication type:

Article

A task-based approach for Gene Ontology evaluation.

Published in:

Journal of Biomedical Semantics, 2013, v. 4, n. Suppl 1, p. 1, doi. 10.1186/2041-1480-4-S1-S4

By:

Clarke, Erik L.;
Loguercio, Salvatore;
Good, Benjamin M.;
Su, Andrew I.

Publication type:

Article

Linking genes to diseases with a SNPedia-Gene Wiki mashup.

Published in:

Journal of Biomedical Semantics, 2012, v. 3, n. Suppl 1, p. 1, doi. 10.1186/2041-1480-3-S1-S6

By:

Good, Benjamin M.;
Clarke, Erik L.;
Loguercio, Salvatore;
Su, Andrew I.

Publication type:

Article

Measuring anti-islet autoimmunity in mouse and human by profiling peripheral blood antigen-specific CD4 T cells.

Published in:

Science Translational Medicine, 2023, v. 15, n. 703, p. 1, doi. 10.1126/scitranslmed.ade3614

By:

Sharma, Siddhartha;
Tan, Xuqian;
Boyer, Josh;
Clarke, Don;
Costanzo, Anne;
Abe, Brian;
Kain, Lisa;
Holt, Marie;
Armstrong, Adrienne;
Rihanek, Marynette;
Su, Andrew;
Speake, Cate;
Gottlieb, Peter;
Gottschalk, Michael;
Pettus, Jeremy;
Teyton, Luc

Publication type:

Article

Mohawk is a transcription factor that promotes meniscus cell phenotype and tissue repair and reduces osteoarthritis severity.

Published in:

Science Translational Medicine, 2020, v. 12, n. 567, p. 1, doi. 10.1126/scitranslmed.aan7967

By:

Lee, Kwang Il;
Gamini, Ramya;
Olmer, Merissa;
Ikuta, Yasunari;
Hasei, Joe;
Baek, Jihye;
Alvarez-Garcia, Oscar;
Grogan, Shawn P.;
D'Lima, Darryl D.;
Asahara, Hiroshi;
Su, Andrew I.;
Lotz, Martin K.

Publication type:

Article

The influence of cholesterol and lipid metabolism on host cell structure and hepatitis C virus replication.

Published in:

Biochemistry & Cell Biology, 2006, v. 84, n. 1, p. 67, doi. 10.1139/O05-149

By:

Sagan, Selena M.;
Rouleau, Yanouchka;
Leggiadro, Cynthia;
Supekova, Lubica;
Schultz, Peter G.;
Su, Andrew I.;
Pezacki, John Paul

Publication type:

Article

Author Correction: A protocol for adding knowledge to Wikidata: aligning resources on human coronaviruses.

Published in:

2023

By:

Waagmeester, Andra;
Willighagen, Egon L.;
Su, Andrew I.;
Kutmon, Martina;
Gayo, Jose Emilio Labra;
Fernández-Álvarez, Daniel;
Groom, Quentin;
Schaap, Peter J.;
Verhagen, Lisa M.;
Koehorst, Jasper J.

Publication type:

Correction Notice

Genomewide Association Analysis in Diverse Inbred Mice: Power and Population Structure.

Published in:

Genetics, 2007, v. 176, n. 1, p. 675, doi. 10.1534/genetics.106.066241

By:

McClurg, Philip;
Janes, Jeff;
Chunlei Wu;
Delano, David L.;
Walker, John R.;
Batalov, Serge;
Takahashi, Joseph S.;
Shimomura, Kazuhiro;
Kohsaka, Akira;
Bass, Joseph;
Wiltshire, Tim;
Su, Andrew I.

Publication type:

Article

HA novel approach to investigate tissue-specific trinucleotide repeat instability.

Published in:

BMC Systems Biology, 2010, v. 4, p. 29, doi. 10.1186/1752-0509-4-29

By:

Jong-Min Lee;
Jie Zhang;
Su, Andrew I.;
Walker, John R.;
Wiltshire, Tim;
Kihwa Kang;
Dragileva, Ella;
Gillis, Tammy;
Lopez, Edith T.;
Boily, Marie-Josee;
Cyr, Michel;
Kohane, Isaac;
Gusella, James F.;
MacDonald, Marcy E.;
Wheeler, Vanessa C.

Publication type:

Article

Docking molecules by families to increase the diversity of hits in database screens: Computational strategy and experimental evaluation.

Published in:

Proteins, 2001, v. 42, n. 2, p. 279, doi. 10.1002/1097-0134(20010201)42:2<279::AID-PROT150>3.0.CO;2-U

By:

Su, Andrew I.;
Lorber, David M.;
Weston, G. Scott;
Baase, Walter A.;
Matthews, Brian W.;
Shoichet, Brian K.

Publication type:

Article

A Gene Wiki for Community Annotation of Gene Function.

Published in:

PLoS Biology, 2008, v. 6, n. 7, p. e175, doi. 10.1371/journal.pbio.0060175

By:

Huss, III, Jon W.;
Orozco, Camilo;
Goodale, James;
Wu, Chunlei;
Batalov, Serge;
Vickers, Tim J.;
Valafar, Faramarz;
Su, Andrew I.

Publication type:

Article

Use of a Dense Single Nucleotide Polymorphism Map for In Silico Mapping in the Mouse.

Published in:

PLoS Biology, 2004, v. 2, n. 12, p. 2159, doi. 10.1371/journal.pbio.0020393

By:

Pletcher, Mathew T.;
McClurg, Philip;
Batalov, Serge;
Su, Andrew I.;
Barnes, S. Whitney;
Lagler, Erica;
Korstanje, Ron;
Xiaosong Wang;
Nusskern, Deborah;
Bogue, Molly A.;
Mural, Richard J.;
Paigen, Beverly;
Wiltshire, Tim

Publication type:

Article

Use of a Dense Single Nucleotide Polymorphism Map for In Silico Mapping in the Mouse.

Published in:

PLoS Biology, 2004, v. 2, n. 11, p. 1, doi. 10.1371/journal.pbio.0020393

By:

Pletcher, Mathew T;
McClurg, Philip;
Batalov, Serge;
Su, Andrew I;
Barnes, S. Whitney;
Lagler, Erica;
Korstanje, Ron;
Wang, Xiaosong;
Nusskern, Deborah;
Bogue, Molly A;
Mural, Richard J;
Paigen, Beverly;
Wiltshire, Tim

Publication type:

Article

Visual Artificial Tongue for Quantitative Metal-Cation Analysis by an Off-the-Shelf Dye Array.

Published in:

Chemistry - A European Journal, 2006, v. 12, n. 22, p. 5691, doi. 10.1002/chem.200600307

By:

Jae Wook Lee;
Jun-Seok Lee;
Mira Kang;
Andrew I. Su;
Young-Tae Chang

Publication type:

Article

Perspectives on tracking data reuse across biodata resources.

Published in:

Bioinformatics Advances, 2024, v. 4, n. 1, p. 1, doi. 10.1093/bioadv/vbae057

By:

Ross, Karen E;
Bastian, Frederic B;
Buys, Matt;
Cook, Charles E;
D'Eustachio, Peter;
Harrison, Melissa;
Hermjakob, Henning;
Li, Donghui;
Lord, Phillip;
Natale, Darren A;
Peters, Bjoern;
Sternberg, Paul W;
Su, Andrew I;
Thakur, Matthew;
Thomas, Paul D;
Bateman, Alex;
Consortium, and the UniProt

Publication type:

Article

Crowdsourcing in biomedicine: challenges and opportunities.

Published in:

Briefings in Bioinformatics, 2016, v. 17, n. 1, p. 23, doi. 10.1093/bib/bbv021

By:

Khare, Ritu;
Good, Benjamin M.;
Leaman, Robert;
Su, Andrew I.;
Zhiyong Lu

Publication type:

Article

The evolution of dynamin to regulate clathrin-mediated endocytosis.

Published in:

BioEssays, 2012, v. 34, n. 8, p. 643, doi. 10.1002/bies.201200033

By:

Liu, Ya-Wen;
Su, Andrew I.;
Schmid, Sandra L.

Publication type:

Article

Duodenal angiosarcoma can be misdiagnosed as a Dieulafoy's lesion.

Published in:

Gastroenterology & Hepatology from Bed to Bench, 2020, v. 13, n. 3, p. 268

By:

Amini, Afshin;
Koury, Elliot;
Vaezi, Zahra;
Melnick, Jeffrey;
Su, Andrew;
Chahla, Elie

Publication type:

Article

Structured reviews for data and knowledge-driven research.

Published in:

Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baaa015

By:

Queralt-Rosinach, Núria;
Stupp, Gregory S;
Li, Tong Shu;
Mayers, Michael;
Hoatlin, Maureen E;
Might, Matthew;
Good, Benjamin M;
Su, Andrew I

Publication type:

Article

ChlamBase: a curated model organism database for the Chlamydia research community.

Published in:

Database: The Journal of Biological Databases & Curation, 2019, v. 2019, p. N.PAG, doi. 10.1093/database/baz091

By:

Putman, Tim;
Hybiske, Kevin;
Jow, Derek;
Afrasiabi, Cyrus;
Lelong, Sebastien;
Cano, Marco Alvarado;
Stupp, Gregory S;
Waagmeester, Andra;
Good, Benjamin M;
Wu, Chunlei;
Su, Andrew I

Publication type:

Article

ChlamBase: a curated model organism database for the Chlamydia research community.

Published in:

Database: The Journal of Biological Databases & Curation, 2019, v. 2019, p. N.PAG, doi. 10.1093/database/baz041

By:

Putman, Tim;
Hybiske, Kevin;
Jow, Derek;
Afrasiabi, Cyrus;
Lelong, Sebastien;
Cano, Marco Alvarado;
Stupp, Gregory S;
Waagmeester, Andra;
Good, Benjamin M;
Wu, Chunlei;
Su, Andrew I

Publication type:

Article

WikiGenomes: an open web application for community consumption and curation of gene annotation data in Wikidata.

Published in:

Database: The Journal of Biological Databases & Curation, 2017, v. 2017, n. 1, p. 1, doi. 10.1093/database/bax025

By:

Putman, Tim E.;
Lelong, Sebastien;
Burgstaller-Muehlbacher, Sebastian;
Waagmeester, Andra;
Diesh, Colin;
Dunn, Nathan;
Munoz-Torres, Monica;
Stupp, Gregory S.;
Chunlei Wu;
Su, Andrew I.;
Good, Benjamin M.

Publication type:

Article

Centralizing content and distributing labor: a community model for curating the very long tail of microbial genomes.

Published in:

Database: The Journal of Biological Databases & Curation, 2016, v. 2016, p. 1, doi. 10.1093/database/baw028

By:

Putman, Tim E.;
Burgstaller-Muehlbacher, Sebastian;
Waagmeester, Andra;
Chunlei Wu;
Su, Andrew I.;
Good, Benjamin M.

Publication type:

Article

A crowdsourcing workflow for extracting chemical-induced disease relations from free text.

Published in:

Database: The Journal of Biological Databases & Curation, 2016, v. 2016, p. 1, doi. 10.1093/database/baw051

By:

Tong Shu Li;
Bravo, Àlex;
Furlong, Laura I.;
Good, Benjamin M.;
Su, Andrew I.

Publication type:

Article

Wikidata as a semantic framework for the Gene Wiki initiative.

Published in:

Database: The Journal of Biological Databases & Curation, 2016, v. 2016, p. 1, doi. 10.1093/database/baw015

By:

Burgstaller-Muehlbacher, Sebastian;
Waagmeester, Andra;
Mitraka, Elvira;
Turner, Julia;
Putman, Tim;
Leong, Justin;
Naik, Chinmay;
Pavlidis, Paul;
Schriml, Lynn;
Good, Benjamin M.;
Su, Andrew I.

Publication type:

Article

Combining machine learning, crowdsourcing and expert knowledge to detect chemical-induced diseases in text.

Published in:

Database: The Journal of Biological Databases & Curation, 2016, v. 2016, p. 1, doi. 10.1093/database/baw094

By:

Bravo, Alex;
Tong Shu Li;
Su, Andrew I.;
Good, Benjamin M.;
Furlong, Laura I.

Publication type:

Article