Works by Stunnenberg, Hendrik G.

Results: 101

Epigenetic Regulation of Learning and Memory by Drosophila EHMT/G9a.

Published in:

PLoS Biology, 2011, v. 9, n. 1, p. 1, doi. 10.1371/journal.pbio.1000569

By:

Kramer, Jamie M.;
Kochinke, Korinna;
Oortveld, Merel A. W.;
Marks, Hendrik;
Kramer, Daniela;
de Jong, Eiko K.;
Asztalos, Zoltan;
Westwood, J. Timothy;
Stunnenberg, Hendrik G.;
Sokolowski, Marla B.;
Keleman, Krystyna;
Huiqing Zhou;
van Bokhoven, Hans;
Schenck, Annette

Publication type:

Article

Controlled Assembly of Macromolecular β-Sheet Fibrils.

Published in:

Angewandte Chemie, 2005, v. 117, n. 13, p. 2004, doi. 10.1002/ange.200462415

By:

Jurgen M. Smeenk;
Matthijs B. J. Otten;
Jens Thies;
David A. Tirrell;
Hendrik G. Stunnenberg;
Jan C. M. van Hest

Publication type:

Article

Mechanisms of transactivation by retinoic acid receptors.

Published in:

BioEssays, 1993, v. 15, n. 5, p. 309, doi. 10.1002/bies.950150504

By:

Stunnenberg, Hendrik G.

Publication type:

Article

STARR-seq identifies active, chromatin-masked, and dormant enhancers in pluripotent mouse embryonic stem cells.

Published in:

Genome Biology, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s13059-020-02156-3

By:

Peng, Tianran;
Zhai, Yanan;
Atlasi, Yaser;
ter Huurne, Menno;
Marks, Hendrik;
Stunnenberg, Hendrik G.;
Megchelenbrink, Wout

Publication type:

Article

Leukemic transformation by the v-ErbA oncoprotein entails constitutive binding to and repression of an erythroid enhancer in vivo.

Published in:

EMBO Journal, 1998, v. 17, n. 24, p. 7382, doi. 10.1093/emboj/17.24.7382

By:

Ciana, Paolo;
Braliou, Georgia G.;
Demay, Florence G.;
von Lindern, Marieke;
Barettino, Domingo;
Beug, Hartmut;
Stunnenberg, Hendrik G.

Publication type:

Article

UTF1, a novel transcriptional coactivator expressed in pluripotent embryonic stem cells and extra-embryonic cells.

Published in:

EMBO Journal, 1998, v. 17, n. 7, p. 2019, doi. 10.1093/emboj/17.7.2019

By:

Okuda, Akihiko;
Fukushima, Akiko;
Nishimoto, Masazzumi;
Orimo, Akira;
Yamagishi, Toshiyuki;
Nabeshima, Yoko;
Kuro-o, Makoto;
Nabeshima, Yo-ichi;
Boon, Kathy;
Keaveney, Marie;
Stunnenberg, Hendrik G.;
Muramatsu, Masami

Publication type:

Article

Efficient synthesis, termination and release of RNA polymerase III transcripts in Xenopusextracts depleted of La protein.

Published in:

EMBO Journal, 1998, v. 17, n. 7, p. 2033, doi. 10.1093/emboj/17.7.2033

By:

Lin-Marq, Nathalie;
Clarkson, Stuart G.;
Nishimoto, Masazumi;
Orimo, Akira;
Yamagishi, Toshiyuki;
Nabeshima, Yoko;
Kuro-o, Makoto;
Nabeshima, Yo-ichi;
Boon, Kathy;
Keaveney, Marie;
Stunnenberg, Hendrik G.;
Muramatsu, Masami

Publication type:

Article

A comprehensive evaluation of rodent malaria parasite genomes and gene expression.

Published in:

BMC Biology, 2014, v. 12, n. 1, p. 2, doi. 10.1186/s12915-014-0086-0

By:

Otto, Thomas D.;
Böhme, Ulrike;
Jackson, Andrew P.;
Hunt, Martin;
Franke-Fayard, Blandine;
Hoeijmakers, Wieteke A. M.;
Religa, Agnieszka A.;
Robertson, Lauren;
Sanders, Mandy;
Ogun, Solabomi A.;
Cunningham, Deirdre;
Erhart, Annette;
Billker, Oliver;
Khan, Shahid M.;
Stunnenberg, Hendrik G.;
Langhorne, Jean;
Holder, Anthony A.;
Waters, Andrew P.;
Newbold, Chris I.;
Pain, Arnab

Publication type:

Article

MicroRNA-Assisted Hormone Cell Signaling in Colorectal Cancer Resistance.

Published in:

Cells (2073-4409), 2021, v. 10, n. 1, p. 39, doi. 10.3390/cells10010039

By:

Massaro, Crescenzo;
Safadeh, Elham;
Sgueglia, Giulia;
Stunnenberg, Hendrik G.;
Altucci, Lucia;
Dell'Aversana, Carmela

Publication type:

Article

Crosstalk between c-Jun and TAp73α/β contributes to the apoptosis–survival balance.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 14, p. 6069, doi. 10.1093/nar/gkr028

By:

Koeppel, Max;
van Heeringen, Simon J.;
Kramer, Daniela;
Smeenk, Leonie;
Janssen-Megens, Eva;
Hartmann, Marianne;
Stunnenberg, Hendrik G.;
Lohrum, Marion

Publication type:

Article

Characterization of genome-wide p53-binding sites upon stress response.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 11, p. 3639, doi. 10.1093/nar/gkn232

By:

Smeenk, Leonie;
van Heeringen, Simon J.;
Koeppel, Max;
van Driel, Marc A.;
Bartels, Stefanie J. J.;
Akkers, Robert C.;
Denissov, Sergei;
Stunnenberg, Hendrik G.;
Lohrum, Marion

Publication type:

Article

DNA methylation immediately adjacent to active histone marking does not silence transcription.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 3, p. 801, doi. 10.1093/nar/gkl1014

By:

Brinkman, Arie B.;
Pennings, Sebastiaan W. C.;
Braliou, Georgia G.;
Rietveld, Luc E. G.;
Stunnenberg, Hendrik G.

Publication type:

Article

Molecular characterization of Sin3 PAH-domain interactor specificity and identification of PAH partners.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 14, p. 3929, doi. 10.1093/nar/gkl537

By:

Le Guezennec, Xavier;
Vermeulen, Michiel;
Stunnenberg, Hendrik G.

Publication type:

Article

Differential transcription of the orphan receptor RORβ in nuclear extracts derived from Neuro2A and HeLa cells.

Published in:

Nucleic Acids Research, 2001, v. 29, n. 16, p. 3424, doi. 10.1093/nar/29.16.3424

By:

Gawlas, Katrin;
Stunnenberg, Hendrik G.

Publication type:

Article

Genome-wide analysis of differential transcriptional and epigenetic variability across human immune cell types.

Published in:

Genome Biology, 2017, v. 18, p. 1, doi. 10.1186/s13059-017-1156-8

By:

Ecker, Simone;
Lu Chen;
Pancaldi, Vera;
Bagger, Frederik O.;
Fernández, José María;
de Santa Pau, Enrique Carrillo;
Juan, David;
Mann, Alice L.;
Watt, Stephen;
Casale, Francesco Paolo;
Sidiropoulos, Nikos;
Rapin, Nicolas;
Merkel, Angelika;
Stunnenberg, Hendrik G.;
Stegle, Oliver;
Frontini, Mattia;
Downes, Kate;
Pastinen, Tomi;
Kuijpers, Taco W.;
Rico, Daniel

Publication type:

Article

Longitudinal single-cell transcriptomics reveals distinct patterns of recurrence in acute myeloid leukemia.

Published in:

Molecular Cancer, 2022, v. 21, n. 1, p. 1, doi. 10.1186/s12943-022-01635-4

By:

Zhai, Yanan;
Singh, Prashant;
Dolnik, Anna;
Brazda, Peter;
Atlasy, Nader;
del Gaudio, Nunzio;
Döhner, Konstanze;
Döhner, Hartmut;
Minucci, Saverio;
Martens, Joost;
Altucci, Lucia;
Megchelenbrink, Wout;
Bullinger, Lars;
Stunnenberg, Hendrik G.

Publication type:

Article

CBX2 shapes chromatin accessibility promoting AML via p38 MAPK signaling pathway.

Published in:

Molecular Cancer, 2022, v. 21, n. 1, p. 1, doi. 10.1186/s12943-022-01603-y

By:

Del Gaudio, Nunzio;
Di Costanzo, Antonella;
Liu, Ning Qing;
Conte, Lidio;
Dell'Aversana, Carmela;
Bove, Guglielmo;
Benedetti, Rosaria;
Montella, Liliana;
Ciardiello, Fortunato;
Carafa, Vincenzo;
Ambrosino, Concetta;
Tucci, Valeria;
Conte, Mariarosaria;
Martens, Joost H. A.;
Stunnenberg, Hendrik G.;
Nebbioso, Angela;
Altucci, Lucia

Publication type:

Article

Extensive patient-to-patient single nucleus transcriptome heterogeneity in pheochromocytomas and paragangliomas.

Published in:

Frontiers in Oncology, 2024, p. 1, doi. 10.3389/fonc.2022.965168

By:

Brazda, Peter;
Ruiz-Moreno, Cristian;
Megchelenbrink, Wout L.;
Timmers, Henri J. L. M.;
Stunnenberg, Hendrik G.

Publication type:

Article

Dendritic cells actively limit interleukin-10 Production Under inflammatory conditions via Dc-scriPT and Dual-specificity Phosphatase 4.

Published in:

Frontiers in Immunology, 2018, p. 1, doi. 10.3389/fimmu.2018.01420

By:

Søndergaard, Jonas Nørskov;
van Heeringen, Simon J.;
Looman, Maaike W. G.;
Chunling Tang;
Triantis, Vassilis;
Louche, Pauline;
Janssen-Megens, Eva M.;
Sieuwerts, Anieta M.;
Martens, John W. M.;
Logie, Colin;
Stunnenberg, Hendrik G.;
Ansems, Marleen;
Adema, Gosse J.

Publication type:

Article

Whole-genome fingerprint of the DNA methylome during human B cell differentiation.

Published in:

Nature Genetics, 2015, v. 47, n. 7, p. 746, doi. 10.1038/ng.3291

By:

Kulis, Marta;
Queirós, Ana C;
Castellano, Giancarlo;
Beekman, Renée;
Clot, Guillem;
Verdaguer-Dot, Néria;
Russiñol, Nuria;
Vilarrasa-Blasi, Roser;
Campo, Elías;
Martín-Subero, José I;
Caron, Gersende;
Fest, Thierry;
Muench, Marcus O;
Fomin, Marina E;
Lee, Seung-Tae;
Wiemels, Joseph L;
Stunnenberg, Hendrik G;
Siebert, Reiner;
Küppers, Ralf;
Merkel, Angelika

Publication type:

Article

Histone modification patterns associated with the human X chromosome.

Published in:

EMBO Reports, 2006, v. 7, n. 6, p. 628, doi. 10.1038/sj.embor.7400686

By:

Brinkman, Arie B.;
Roelofsen, Thijs;
Pennings, Sebastiaan W. C.;
Martens, Joost H. A.;
Jenuwein, Thomas;
Stunnenberg, Hendrik G.

Publication type:

Article

Regulome analysis in B-acute lymphoblastic leukemia exposes Core Binding Factor addiction as a therapeutic vulnerability.

Published in:

Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-34653-3

By:

Wray, Jason P.;
Deltcheva, Elitza M.;
Boiers, Charlotta;
Richardson, Simon Е;
Chhetri, Jyoti Bikram;
Brown, John;
Gagrica, Sladjana;
Guo, Yanping;
Illendula, Anuradha;
Martens, Joost H. A.;
Stunnenberg, Hendrik G.;
Bushweller, John H.;
Nimmo, Rachael;
Enver, Tariq

Publication type:

Article

Single cell transcriptomic analysis of the immune cell compartment in the human small intestine and in Celiac disease.

Published in:

Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-32691-5

By:

Atlasy, Nader;
Bujko, Anna;
Bækkevold, Espen S.;
Brazda, Peter;
Janssen-Megens, Eva;
Lundin, Knut E. A.;
Jahnsen, Jørgen;
Jahnsen, Frode L.;
Stunnenberg, Hendrik G.

Publication type:

Article

Genome-wide epigenomic profiling for biomarker discovery.

Published in:

Clinical Epigenetics, 2016, v. 8, p. 1, doi. 10.1186/s13148-016-0284-4

By:

Dirks, René A. M.;
Stunnenberg, Hendrik G.;
Marks, Hendrik

Publication type:

Article

FACIL: Fast and Accurate Genetic Code Inference and Logo.

Published in:

Bioinformatics, 2011, v. 27, n. 14, p. 1929, doi. 10.1093/bioinformatics/btr316

By:

Dutilh, Bas E.;
Jurgelenaite, Rasa;
Szklarczyk, Radek;
van Hijum, Sacha A.F.T.;
Harhangi, Harry R.;
Schmid, Markus;
de Wild, Bart;
Françoijs, Kees−Jan;
Stunnenberg, Hendrik G.;
Strous, Marc;
Jetten, Mike S.M.;
Op den Camp, Huub J.M.;
Huynen, Martijn A.

Publication type:

Article

Extensive epigenomic integration of the glucocorticoid response in primary human monocytes and in vitro derived macrophages.

Published in:

Scientific Reports, 2019, v. 9, n. 1, p. 1, doi. 10.1038/s41598-019-39395-9

By:

Wang, Cheng;
Nanni, Luca;
Novakovic, Boris;
Megchelenbrink, Wout;
Kuznetsova, Tatyana;
Stunnenberg, Hendrik G.;
Ceri, Stefano;
Logie, Colin

Publication type:

Article

Restoring polyamines protects from age-induced memory impairment in an autophagy-dependent manner.

Published in:

Nature Neuroscience, 2013, v. 16, n. 10, p. 1453, doi. 10.1038/nn.3512

By:

Gupta, Varun K;
Scheunemann, Lisa;
Eisenberg, Tobias;
Mertel, Sara;
Bhukel, Anuradha;
Koemans, Tom S;
Kramer, Jamie M;
Liu, Karen S Y;
Schroeder, Sabrina;
Stunnenberg, Hendrik G;
Sinner, Frank;
Magnes, Christoph;
Pieber, Thomas R;
Dipt, Shubham;
Fiala, André;
Schenck, Annette;
Schwaerzel, Martin;
Madeo, Frank;
Sigrist, Stephan J

Publication type:

Article

Antiviral responses induced by Tdap-IPV vaccination are associated with persistent humoral immunity to Bordetella pertussis.

Published in:

Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-46560-w

By:

Gillard, Joshua;
Suffiotti, Madeleine;
Brazda, Peter;
Venkatasubramanian, Prashanna B.;
Versteegen, Pauline;
de Jonge, Marien I.;
Kelly, Dominic;
Bibi, Sagida;
Pinto, Marta Valente;
Simonetti, Elles;
Babiceanu, Mihaela;
Kettring, Andrew;
Teodosio, Cristina;
de Groot, Ronald;
Berbers, Guy;
Stunnenberg, Hendrik G.;
Schanen, Brian;
Fenwick, Craig;
Huynen, Martijn A.;
Diavatopoulos, Dimitri A.

Publication type:

Article

Towards cracking the epigenetic code using a combination of high-throughput epigenomics and quantitative mass spectrometry-based proteomics.

Published in:

BioEssays, 2011, v. 33, n. 7, p. 547, doi. 10.1002/bies.201100044

By:

Stunnenberg, Hendrik G.;
Vermeulen, Michiel

Publication type:

Article

The Role of Necroptosis: Biological Relevance and Its Involvement in Cancer.

Published in:

Cancers, 2021, v. 13, n. 4, p. 684, doi. 10.3390/cancers13040684

By:

Della Torre, Laura;
Nebbioso, Angela;
Stunnenberg, Hendrik G.;
Martens, Joost H. A.;
Carafa, Vincenzo;
Altucci, Lucia;
Dimanche-Boitrel, Marie-Thérèse

Publication type:

Article

Evidence for a dynamic role of the linker histone variant H1x during retinoic acid-induced differentiation of NT2 cells

Published in:

FEBS Letters, 2010, v. 584, n. 22, p. 4661, doi. 10.1016/j.febslet.2010.10.041

By:

Shahhoseini, Maryam;
Favaedi, Raha;
Baharvand, Hossein;
Sharma, Vikram;
Stunnenberg, Hendrik G

Publication type:

Article

H2A.Z Demarcates Intergenic Regions of the Plasmodium falciparum Epigenome That Are Dynamically Marked by H3K9ac and H3K4me3.

Published in:

PLoS Pathogens, 2010, v. 6, n. 12, p. 1, doi. 10.1371/journal.ppat.1001223

By:

Bártfai, Richárd;
Hoeijmakers, Wieteke A. M.;
Salcedo-Amaya, Adriana M.;
Smits, Arne H.;
Janssen-Megens, Eva;
Kaan, Anita;
Treeck, Moritz;
Gilberger, Tim-Wolf;
Françoijs, Kees-Jan;
Stunnenberg, Hendrik G.

Publication type:

Article

Three Members of the 6-cys Protein Family of Plasmodium Play a Role in Gamete Fertility.

Published in:

PLoS Pathogens, 2010, v. 6, n. 4, p. 1, doi. 10.1371/journal.ppat.1000853

By:

van Dijk, Melissa R.;
van Schaijk, Ben C. L.;
Khan1, Shahid M.;
van Dooren, Maaike W.;
Ramesar, Jai;
Kaczanowski, Szymon;
van Gemert, Geert-Jan;
Kroeze, Hans;
Stunnenberg, Hendrik G.;
Eling, Wijnand M.;
Sauerwein2, Robert W.;
Waters, Andrew P.;
Janse, Chris J.

Publication type:

Article

A Major Role for the Plasmodium falciparum ApiAP2 Protein PfSIP2 in Chromosome End Biology.

Published in:

PLoS Pathogens, 2010, v. 6, n. 2, p. 1, doi. 10.1371/journal.ppat.1000784

By:

Flueck, Christian;
Bartfai, Richard;
Niederwieser, Igor;
Witmer, Kathrin;
Alako, Blaise T. F.;
Moes, Suzette;
Bozdech, Zbynek;
Jenoe, Paul;
Stunnenberg, Hendrik G.;
Voss, Till S.

Publication type:

Article

Plasmodium falciparum Heterochromatin Protein 1 Marks Genomic Loci Linked to Phenotypic Variation of Exported Virulence Factors.

Published in:

PLoS Pathogens, 2009, v. 5, n. 9, p. 1, doi. 10.1371/journal.ppat.1000569

By:

Flueck, Christian;
Bartfai, Richard;
Volz, Jennifer;
Niederwieser, Igor;
Salcedo-Amaya, Adriana M.;
Alako, Blaise T. F.;
Ehlgen, Florian;
Ralph, Stuart A.;
Cowman, Alan F.;
Bozdech, Zbynek;
Stunnenberg, Hendrik G.;
Voss, Till S.

Publication type:

Article

Proteomic Profiling of Plasmodium Sporozoite Maturation Identifies New Proteins Essential for Parasite Development and Infectivity.

Published in:

PLoS Pathogens, 2008, v. 4, n. 10, p. 1, doi. 10.1371/journal.ppat.1000195

By:

Lasonder, Edwin;
Janse, Chris J.;
van Gemert, Geert-Jan;
Mair, Gunnar R.;
Vermunt, Adriaan M. W.;
Douradinha, Bruno G.;
van Noort, Vera;
Huynen, Martijn A.;
Luty, Adrian J. F.;
Kroeze, Hans;
Khan, Shahid M.;
Sauerwein, Robert W.;
Waters, Andrew P.;
Mann, Matthias;
Stunnenberg, Hendrik G.

Publication type:

Article

Genome-Wide Profiling of Liver X Receptor, Retinoid X Receptor, and Peroxisome Proliferator-Activated Receptor a in Mouse Liver Reveals Extensive Sharing of Binding Sites.

Published in:

Molecular & Cellular Biology, 2012, v. 32, n. 4, p. 12, doi. 10.1128/MCB.06175-11

By:

Boergesen, Michael;
Pedersen, Thomas Åskov;
Gross, Barbara;
van Heeringen, Simon J.;
Hagenbeek, Dik;
Bindesbøll, Christian;
Caron, Sandrine;
Lalloyer, Fanny;
Steffensen, Knut R.;
Nebb, Hilde I .;
Gustafsson, Jan-Åke;
Stunnenberg, Hendrik G.;
Staels, Bart;
Mandrup, Susanne

Publication type:

Article

Genome-Wide Pattern of TCF7L2/TCF4 Chromatin Occupancy in Colorectal Cancer Cells.

Published in:

Molecular & Cellular Biology, 2008, v. 28, n. 8, p. 19, doi. 10.1128/MCB.02175-07

By:

Hatzis, Pantelis;
Van der Flier, Laurens G.;
Van Driel, Marc A.;
Guryev, Victor;
Nielsen, Fiona;
Denissov, Sergei;
Nijman, Isaäc J.;
Koster, Jan;
Santo, Evan E.;
Welboren, Willem;
Versteeg, Rogier;
Cuppen, Edwin;
Van de Wetering, Marc;
Clevers, Hans;
Stunnenberg, Hendrik G.

Publication type:

Article

Heterodimerization of the Drosophila ecdysone receptor with retinoid X receptor and ultraspiracle.

Published in:

Nature, 1993, v. 362, n. 6419, p. 471, doi. 10.1038/362471a0

By:

Thomas, Helen E.;
Stunnenberg, Hendrik G.

Publication type:

Article

Combined quantification of intracellular (phospho-)proteins and transcriptomics from fixed single cells.

Published in:

Scientific Reports, 2019, v. 9, n. 1, p. 1, doi. 10.1038/s41598-018-37977-7

By:

Gerlach, Jan. P.;
van Buggenum, Jessie A. G.;
Tanis, Sabine E. J.;
Hogeweg, Mark;
Heuts, Branco M. H.;
Muraro, Mauro J.;
Elze, Lisa;
Rivello, Francesca;
Rakszewska, Agata;
van Oudenaarden, Alexander;
Huck, Wilhelm T. S.;
Stunnenberg, Hendrik G.;
Mulder, Klaas W.

Publication type:

Article

E-cadherin loss induces targetable autocrine activation of growth factor signalling in lobular breast cancer.

Published in:

Scientific Reports, 2018, v. 8, n. 1, p. 1, doi. 10.1038/s41598-018-33525-5

By:

Teo, Katy;
Gómez-Cuadrado, Laura;
Tenhagen, Milou;
Byron, Adam;
Rätze, Max;
van Amersfoort, Miranda;
Renes, Jojanneke;
Strengman, Eric;
Mandoli, Amit;
Singh, Abhishek A.;
Martens, Joost H.;
Stunnenberg, Hendrik G.;
van Diest, Paul J.;
Brunton, Valerie G.;
Derksen, Patrick W. B.

Publication type:

Article

Extensive patient-to-patient single nucleus transcriptome heterogeneity in pheochromocytomas and paragangliomas.

Published in:

Frontiers in Oncology, 2022, v. 12, p. 01, doi. 10.3389/fonc.2022.965168

By:

Brazda, Peter;
Ruiz-Moreno, Cristian;
Megchelenbrink, Wout L.;
Timmers, Henri J. L. M.;
Stunnenberg, Hendrik G.

Publication type:

Article

H2 A. Z/ H2 B. Z double-variant nucleosomes inhabit the AT-rich promoter regions of the P lasmodium falciparum genome.

Published in:

Molecular Microbiology, 2013, v. 87, n. 5, p. 1061, doi. 10.1111/mmi.12151

By:

Hoeijmakers, Wieteke A. M.;
Salcedo‐Amaya, Adriana M.;
Smits, Arne H.;
Françoijs, Kees‐Jan;
Treeck, Moritz;
Gilberger, Tim‐Wolf;
Stunnenberg, Hendrik G.;
Bártfai, Richárd

Publication type:

Article

Sequence requirements for the export of the Plasmodium falciparum Maurer's clefts protein REX2.

Published in:

Molecular Microbiology, 2009, v. 71, n. 4, p. 1003, doi. 10.1111/j.1365-2958.2008.06582.x

By:

Haase, Silvia;
Herrmann, Susann;
Grüring, Christof;
Heiber, Arlett;
Jansen, Pascal W.;
Langer, Christine;
Treeck, Moritz;
Cabrera, Ana;
Bruns, Caroline;
Struck, Nicole S.;
Kono, Maya;
Engelberg, Klemens;
Ruch, Ulrike;
Stunnenberg, Hendrik G.;
Gilberger, Tim-Wolf;
Spielmann, Tobias

Publication type:

Article

Blood monocyte transcriptome and epigenome analyses reveal loci associated with human atherosclerosis.

Published in:

Nature Communications, 2017, v. 8, n. 1, p. 1, doi. 10.1038/s41467-017-00517-4

By:

Yongmei Liu;
Reynolds, Lindsay M.;
Jingzhong Ding;
Li Hou;
Lohman, Kurt;
Young, Tracey;
Wei Cui;
Zhiqing Huang;
Grenier, Carole;
Ma Wan;
Stunnenberg, Hendrik G.;
Siscovick, David;
Lifang Hou;
Psaty, Bruce M.;
Rich, Stephen S.;
Rotter, Jerome I.;
Kaufman, Joel D.;
Burke, Gregory L.;
Murphy, Susan;
Jacobs Jr., David R.

Publication type:

Article

The non-coding variant rs1800734 enhances DCLK3 expression through long-range interaction and promotes colorectal cancer progression.

Published in:

Nature Communications, 2017, v. 8, n. 2, p. 14418, doi. 10.1038/ncomms14418

By:

Liu, Ning Qing;
ter Huurne, Menno;
Nguyen, Luan N.;
Peng, Tianran;
Wang, Shuang-Yin;
Studd, James B.;
Joshi, Onkar;
Ongen, Halit;
Bramsen, Jesper B;
Yan, Jian;
Andersen, Claus L.;
Taipale, Jussi;
Dermitzakis, Emmanouil T.;
Houlston, Richard S.;
Hubner, Nina C.;
Stunnenberg, Hendrik G.

Publication type:

Article

Information recovery from low coverage whole-genome bisulfite sequencing.

Published in:

Nature Communications, 2016, v. 7, n. 6, p. 11306, doi. 10.1038/ncomms11306

By:

Libertini, Emanuele;
Heath, Simon C.;
Hamoudi, Rifat A.;
Gut, Marta;
Ziller, Michael J.;
Czyz, Agata;
Ruotti, Victor;
Stunnenberg, Hendrik G.;
Frontini, Mattia;
Ouwehand, Willem H.;
Meissner, Alexander;
Gut, Ivo G.;
Beck, Stephan

Publication type:

Article

Controlled Assembly of Macromolecular β-Sheet Fibrils.

Published in:

Angewandte Chemie International Edition, 2005, v. 44, n. 13, p. 1968, doi. 10.1002/anie.200462415

By:

Smeenk, Jurgen M.;
Otten, Matthijs B. J.;
Thies, Jens;
Tirrell, David A.;
Stunnenberg, Hendrik G.;
van Hest, Jan C. M.

Publication type:

Article

The Mad1?Sin3B interaction involves a novel helical fold.

Published in:

Nature Structural Biology, 2000, v. 7, n. 12, p. 1100

By:

Spronk, Christian A. E. M.;
Tessari, Marco;
Kaan, Anita M.;
Jansen, Jacobus F. A.;
Vermeulen, Michiel;
Stunnenberg, Hendrik G.;
Vuister, Geerten W.

Publication type:

Article

Inference of RNA Polymerase II Transcription Dynamics from Chromatin Immunoprecipitation Time Course Data.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 5, p. 1, doi. 10.1371/journal.pcbi.1003598

By:

wa Maina, Ciira;
Honkela, Antti;
Matarese, Filomena;
Grote, Korbinian;
Stunnenberg, Hendrik G.;
Reid, George;
Lawrence, Neil D.;
Rattray, Magnus

Publication type:

Article