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The extent and importance of intragenic recombination.
- Published in:
- Human Genomics, 2004, v. 1, n. 6, p. 410, doi. 10.1186/1479-7364-1-6-410
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- Publication type:
- Article
Gaining confidence in inferred networks.
- Published in:
- Scientific Reports, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41598-022-05402-9
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- Publication type:
- Article
Proteasome isoforms exhibit only quantitative differences in cleavage and epitope generation.
- Published in:
- European Journal of Immunology, 2014, v. 44, n. 12, p. 3508, doi. 10.1002/eji.201444902
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- Publication type:
- Article
Non-equilibrium statistical physics, transitory epigenetic landscapes, and cell fate decision dynamics.
- Published in:
- Mathematical Biosciences & Engineering, 2020, v. 17, n. 6, p. 7916, doi. 10.3934/mbe.2020402
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- Publication type:
- Article
From qualitative data to quantitative models: analysis of the phage shock protein stress response in Escherichia coli.
- Published in:
- BMC Systems Biology, 2011, v. 5, n. 1, p. 69, doi. 10.1186/1752-0509-5-69
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- Publication type:
- Article
Statistical inference of the time-varying structure of gene-regulation networks.
- Published in:
- BMC Systems Biology, 2010, v. 4, p. 130, doi. 10.1186/1752-0509-4-130
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- Publication type:
- Article
Missing effects of zinc in a porcine model of recurrent endotoxemia.
- Published in:
- BMC Surgery, 2005, v. 5, p. 22, doi. 10.1186/1471-2482-5-22
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- Publication type:
- Article
Collagen distribution and expression of matrix metalloproteinases 1 and 13 in patients with anastomotic leakage after large-bowel surgery.
- Published in:
- Langenbeck's Archives of Surgery, 2002, v. 386, n. 7, p. 502, doi. 10.1007/s00423-001-0255-9
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- Publication type:
- Article
Collocation based training of neural ordinary differential equations.
- Published in:
- Statistical Applications in Genetics & Molecular Biology, 2021, v. 20, n. 2, p. 37, doi. 10.1515/sagmb-2020-0025
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- Publication type:
- Article
Biology challenging statistics.
- Published in:
- Statistical Applications in Genetics & Molecular Biology, 2018, v. 17, n. 4, p. N.PAG, doi. 10.1515/sagmb-2018-0048
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- Publication type:
- Article
A graph theoretical approach to data fusion.
- Published in:
- Statistical Applications in Genetics & Molecular Biology, 2016, v. 15, n. 2, p. 107, doi. 10.1515/sagmb-2016-0016
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- Publication type:
- Article
Optimizing threshold-schedules for sequential approximate Bayesian computation: applications to molecular systems.
- Published in:
- Statistical Applications in Genetics & Molecular Biology, 2013, v. 12, n. 5, p. 603, doi. 10.1515/sagmb-2012-0043
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- Publication type:
- Article
On optimality of kernels for approximate Bayesian computation using sequential Monte Carlo.
- Published in:
- Statistical Applications in Genetics & Molecular Biology, 2013, v. 12, n. 1, p. 87, doi. 10.1515/sagmb-2012-0069
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- Publication type:
- Article
Zinc deficiency impairs wound healing of colon anastomosis in rats.
- Published in:
- International Journal of Colorectal Disease, 2010, v. 25, n. 2, p. 251, doi. 10.1007/s00384-009-0831-y
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- Publication type:
- Article
Increased distribution of collagen type III and reduced expression of matrix metalloproteinase 1 in patients with diverticular disease.
- Published in:
- International Journal of Colorectal Disease, 2001, v. 16, n. 5, p. 271, doi. 10.1007/s003840100310
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- Publication type:
- Article
BondGraphs.jl: composable energy-based modelling in systems biology.
- Published in:
- Bioinformatics, 2023, v. 39, n. 10, p. 1, doi. 10.1093/bioinformatics/btad578
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- Publication type:
- Article
HyperGraphs.jl: representing higher-order relationships in Julia.
- Published in:
- Bioinformatics, 2022, v. 38, n. 14, p. 3660, doi. 10.1093/bioinformatics/btac347
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- Publication type:
- Article
Extracellular proteasome-osteopontin circuit regulates cell migration with implications in multiple sclerosis.
- Published in:
- Scientific Reports, 2017, p. 43718, doi. 10.1038/srep43718
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- Publication type:
- Article
A group theoretic approach to model comparison with simplicial representations.
- Published in:
- Journal of Mathematical Biology, 2022, v. 85, n. 5, p. 1, doi. 10.1007/s00285-022-01807-2
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- Publication type:
- Article
Estimating recombination rates from population-genetic data.
- Published in:
- Nature Reviews Genetics, 2003, v. 4, n. 12, p. 959, doi. 10.1038/nrg1227
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- Publication type:
- Article
Pathway dynamics can delineate the sources of transcriptional noise in gene expression.
- Published in:
- eLife, 2021, p. 1, doi. 10.7554/eLife.69324
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- Publication type:
- Article
Modelling Proteasome and Proteasome Regulator Activities.
- Published in:
- Biomolecules (2218-273X), 2014, v. 4, n. 2, p. 585, doi. 10.3390/biom4020585
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- Publication type:
- Article
An information-theoretic framework for deciphering pleiotropic and noisy biochemical signaling.
- Published in:
- Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-07085-1
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- Publication type:
- Article
Haplotype diversity and SNP frequency dependence in the description of genetic variation.
- Published in:
- European Journal of Human Genetics, 2004, v. 12, n. 6, p. 469, doi. 10.1038/sj.ejhg.5201179
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- Publication type:
- Article
Inferring extrinsic noise from single-cell gene expression data using approximate Bayesian computation.
- Published in:
- BMC Systems Biology, 2016, v. 107, p. 1, doi. 10.1186/s12918-016-0324-x
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- Publication type:
- Article
Single Cell Phenotyping Reveals Heterogeneity Among Hematopoietic Stem Cells Following Infection.
- Published in:
- Stem Cells, 2017, v. 35, n. 11, p. 2292, doi. 10.1002/stem.2692
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- Publication type:
- Article
Concise Review: Stem Cell Population Biology: Insights from Hematopoiesis.
- Published in:
- Stem Cells, 2017, v. 35, n. 1, p. 80, doi. 10.1002/stem.2508
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- Publication type:
- Article
Trees on networks: resolving statistical patterns of phylogenetic similarities among interacting proteins.
- Published in:
- BMC Bioinformatics, 2010, v. 11, p. 470, doi. 10.1186/1471-2105-11-470
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- Publication type:
- Article
Generating confidence intervals on biological networks.
- Published in:
- BMC Bioinformatics, 2007, v. 8, p. 467, doi. 10.1186/1471-2105-8-467
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- Publication type:
- Article
Collagen in colon disease.
- Published in:
- 2006
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- Publication type:
- journal article
A systems biology analysis of long and short-term memories of osmotic stress adaptation in fungi.
- Published in:
- BMC Research Notes, 2012, v. 5, n. 1, p. 258, doi. 10.1186/1756-0500-5-258
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- Publication type:
- Article
Model Selection in Systems Biology Depends on Experimental Design.
- Published in:
- PLoS Computational Biology, 2014, v. 10, n. 6, p. 1, doi. 10.1371/journal.pcbi.1003650
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- Publication type:
- Article
Maximizing the Information Content of Experiments in Systems Biology.
- Published in:
- PLoS Computational Biology, 2013, v. 9, n. 1, p. 1, doi. 10.1371/journal.pcbi.1002888
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- Publication type:
- Article
Using Likelihood-Free Inference to Compare Evolutionary Dynamics of the Protein Networks of H. pylori and P. falciparum.
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- PLoS Computational Biology, 2007, v. 3, n. 11, p. e230, doi. 10.1371/journal.pcbi.0030230
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- Publication type:
- Article
Calibrating spatio-temporal models of leukocyte dynamics against in vivo live-imaging data using approximate Bayesian computation.
- Published in:
- Integrative Biology, 2012, v. 4, n. 3, p. 335, doi. 10.1039/c2ib00175f
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- Publication type:
- Article
Parametric and non-parametric gradient matching for network inference: a comparison.
- Published in:
- BMC Bioinformatics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12859-018-2590-7
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- Publication type:
- Article
P38 and JNK have opposing effects on persistence of in vivo leukocyte migration in zebrafish.
- Published in:
- Immunology & Cell Biology, 2013, v. 91, n. 1, p. 60, doi. 10.1038/icb.2012.57
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- Publication type:
- Article
A stochastic vs deterministic perspective on the timing of cellular events.
- Published in:
- Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-49624-z
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- Publication type:
- Article
Is Primary Anastomosis Safe in the Surgical Management of Complications of Acute Diverticulitis?
- Published in:
- American Surgeon, 2007, v. 73, n. 8, p. 787, doi. 10.1177/000313480707300810
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- Publication type:
- Article
A framework for parameter estimation and model selection from experimental data in systems biology using approximate Bayesian computation.
- Published in:
- Nature Protocols, 2014, v. 9, n. 2, p. 439, doi. 10.1038/nprot.2014.025
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- Publication type:
- Article
Overlapping genes: a window on gene evolvability.
- Published in:
- BMC Genomics, 2014, v. 15, n. 1, p. 721, doi. 10.1186/1471-2164-15-721
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- Publication type:
- Article
Phylogenetic diversity of stress signalling pathways in fungi.
- Published in:
- BMC Evolutionary Biology, 2009, v. 9, p. 1, doi. 10.1186/1471-2148-9-44
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- Publication type:
- Article
Comparative analysis of the Saccharomyces cerevisiae and Caenorhabditis elegans protein interaction networks.
- Published in:
- BMC Evolutionary Biology, 2005, v. 5, p. 1, doi. 10.1186/1471-2148-5-23
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- Publication type:
- Article
Integrating Problem-Based Learning Into an Internal Medicine Residency Curriculum.
- Published in:
- Ochsner Journal, 2022, v. 22, n. 4, p. 324, doi. 10.31486/toj.22.0078
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- Publication type:
- Article
GpABC: a Julia package for approximate Bayesian computation with Gaussian process emulation.
- Published in:
- Bioinformatics, 2020, v. 36, n. 10, p. 3286, doi. 10.1093/bioinformatics/btaa078
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- Publication type:
- Article
PEITH(Θ): perfecting experiments with information theory in Python with GPU support.
- Published in:
- Bioinformatics, 2018, v. 34, n. 7, p. 1249, doi. 10.1093/bioinformatics/btx776
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- Publication type:
- Article
MEANS: python package for Moment Expansion Approximation, iNference and Simulation.
- Published in:
- Bioinformatics, 2016, v. 32, n. 18, p. 2863, doi. 10.1093/bioinformatics/btw229
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- Publication type:
- Article
SYSBIONS: nested sampling for systems biology.
- Published in:
- Bioinformatics, 2015, v. 31, n. 4, p. 604, doi. 10.1093/bioinformatics/btu675
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- Publication type:
- Article
Derivative processes for modelling metabolic fluxes.
- Published in:
- Bioinformatics, 2014, v. 30, n. 13, p. 1892
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- Publication type:
- Article
StochDecomp—Matlab package for noise decomposition in stochastic biochemical systems.
- Published in:
- Bioinformatics, 2014, v. 30, n. 1, p. 137, doi. 10.1093/bioinformatics/btt631
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- Publication type:
- Article