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Signal identification for rare and weak features: higher criticism or false discovery rates?
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- Biostatistics, 2013, v. 14, n. 1, p. 129, doi. 10.1093/biostatistics/kxs030
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- Article
High-Dimensional Regression and Variable Selection Using CAR Scores.
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- Statistical Applications in Genetics & Molecular Biology, 2011, v. 10, n. 1, p. 1, doi. 10.2202/1544-6115.1730
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- Article
Accurate Ranking of Differentially Expressed Genes by a Distribution-Free Shrinkage Approach.
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- Statistical Applications in Genetics & Molecular Biology, 2007, v. 6, n. 1, p. 1, doi. 10.2202/1544-6115.1252
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- Article
A Shrinkage Approach to Large-Scale Covariance Matrix Estimation and Implications for Functional Genomics.
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- Statistical Applications in Genetics & Molecular Biology, 2005, v. 4, n. 1, p. 1
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- Article
Partial least squares: a versatile tool for the analysis of high-dimensional genomic data.
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- Briefings in Bioinformatics, 2007, v. 8, n. 1, p. 32, doi. 10.1093/bib/bb1016
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- Article
Konstantin Siroki and Korbinian Strimmer's contribution to the Discussion of 'Vintage factor analysis with varimax performs statistical inference' by Rohe and Zeng.
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- Journal of the Royal Statistical Society: Series B (Statistical Methodology), 2023, v. 85, n. 4, p. 1089, doi. 10.1093/jrsssb/qkad055
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- Article
Discussion on the meeting on ‘Statistical Modelling and analysis of genetic data’.
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- Journal of the Royal Statistical Society: Series B (Statistical Methodology), 2002, v. 64, n. 4, p. 737, doi. 10.1111/1467-9868.00359
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Quantification of protein abundance and interaction defines a mechanism for operation of the circadian clock.
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- eLife, 2022, p. 1, doi. 10.7554/eLife.73976
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- Article
A novel algorithm for simultaneous SNP selection in high-dimensional genome-wide association studies.
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- BMC Bioinformatics, 2012, v. 13, n. 1, p. 284, doi. 10.1186/1471-2105-13-284
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- Article
A general modular framework for gene set enrichment analysis.
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- BMC Bioinformatics, 2009, v. 10, p. 1, doi. 10.1186/1471-2105-10-47
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- Article
A unified approach to false discovery rate estimation.
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- BMC Bioinformatics, 2008, v. 9, p. 1, doi. 10.1186/1471-2105-9-303
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- Article
Modeling gene expression measurement error: a quasi-likelihood approach.
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- BMC Bioinformatics, 2003, v. 4, p. 10, doi. 10.1186/1471-2105-4-10
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- Article
A simple data-adaptive probabilistic variant calling model.
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- Algorithms for Molecular Biology, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s13015-015-0037-5
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- Article
Predicting transcription factor activities from combined analysis of microarray and ChIP data: a partial least squares approach.
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- Theoretical Biology & Medical Modelling, 2005, v. 2, p. 23, doi. 10.1186/1742-4682-2-23
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- Article
Therapeutic vaccination reduces HIV sequence variability.
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- FASEB Journal, 2008, v. 22, n. 2, p. 437, doi. 10.1096/fj.06-7975com
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- Article
Exploring the Demographic History of DNA Sequences Using the Generalized Skyline Plot.
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- Molecular Biology & Evolution, 2001, v. 18, n. 12, p. 2298, doi. 10.1093/oxfordjournals.molbev.a003776
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- Article
Recombination Analysis Using Directed Graphical Models.
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- Molecular Biology & Evolution, 2001, v. 18, n. 1, p. 97, doi. 10.1093/oxfordjournals.molbev.a003725
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- Article
Likelihood Analysis of Phylogenetic Networks Using Directed Graphical Models.
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- Molecular Biology & Evolution, 2000, v. 17, n. 6, p. 875, doi. 10.1093/oxfordjournals.molbev.a026367
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- Article
Book Review: Statistical Methods in Bioinformatics: An Introduction. By Warren J. Ewens and Gregory R. Grant.
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- Biometrical Journal, 2006, v. 48, n. 1, p. 178
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- Article
Accuracy of Neighbor Joining for n-Taxon Trees.
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- Systematic Biology, 1996, v. 45, n. 4, p. 516, doi. 10.1093/sysbio/45.4.516
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- Article
An empirical Bayes approach to inferring large-scale gene association networks.
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- Bioinformatics, 2005, v. 21, n. 6, p. 754
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- Article
Identifying periodically expressed transcripts in microarray time series data.
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- Bioinformatics, 2004, v. 20, n. 1, p. 5, doi. 10.1093/bioinformatics/btg364
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A CART-based approach to discover emerging patterns in microarray data.
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- Bioinformatics, 2003, v. 19, n. 18, p. 2465
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- Article
TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing.
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- Bioinformatics, 2002, v. 18, n. 3, p. 502, doi. 10.1093/bioinformatics/18.3.502
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- Article
PAL: an object-oriented programming library for molecular evolution and phylogenetics.
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- Bioinformatics, 2001, v. 17, n. 7, p. 662, doi. 10.1093/bioinformatics/17.7.662
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- Article
A whitening approach to probabilistic canonical correlation analysis for omics data integration.
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- BMC Bioinformatics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12859-018-2572-9
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Entropy Inference and the James-Stein Estimator, with Application to Nonlinear Gene Association Networks.
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- Journal of Machine Learning Research, 2009, v. 10, n. 7, p. 1469
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Inference of demographic history from genealogical trees using reversible jump Markov chain Monte Carlo.
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- BMC Evolutionary Biology, 2005, v. 5, p. 6, doi. 10.1186/1471-2148-5-6
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TREEFINDER: a powerful graphical analysis environment for molecular phylogenetics.
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- BMC Evolutionary Biology, 2004, v. 4, p. 18, doi. 10.1186/1471-2148-4-18
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Differential protein expression and peak selection in mass spectrometry data by binary discriminant analysis.
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- Bioinformatics, 2015, v. 31, n. 19, p. 3156, doi. 10.1093/bioinformatics/btv334
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MALDIquant: a versatile R package for the analysis of mass spectrometry data.
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- Bioinformatics, 2012, v. 28, n. 17, p. 2270, doi. 10.1093/bioinformatics/bts447
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Over-optimism in bioinformatics: an illustration.
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- Bioinformatics, 2010, v. 26, n. 16, p. 1990, doi. 10.1093/bioinformatics/btq323
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Gene ranking and biomarker discovery under correlation.
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- Bioinformatics, 2009, v. 25, n. 20, p. 2700, doi. 10.1093/bioinformatics/btp460
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Identifying periodically expressed transcripts in microarray time series data.
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- Bioinformatics, 2008, v. 24, n. 19, p. 2274, doi. 10.1093/bioinformatics/btn430
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- Article