Works matching AU Stockinger, Heinz

Results: 19

The bio.tools registry of software tools and data resources for the life sciences.

Published in:

2019

By:

Ison, Jon;
Ienasescu, Hans;
Chmura, Piotr;
Rydza, Emil;
Ménager, Hervé;
Kalaš, Matúš;
Schwämmle, Veit;
Grüning, Björn;
Beard, Niall;
Lopez, Rodrigo;
Duvaud, Severine;
Stockinger, Heinz;
Persson, Bengt;
Vařeková, Radka Svobodová;
Raček, Tomáš;
Vondrášek, Jiří;
Peterson, Hedi;
Salumets, Ahto;
Jonassen, Inge;
Hooft, Rob

Publication type:

Letter

RAxML Grove: an empirical phylogenetic tree database.

Published in:

Bioinformatics, 2022, v. 38, n. 6, p. 1741, doi. 10.1093/bioinformatics/btab863

By:

Höhler, Dimitri;
Pfeiffer, Wayne;
Ioannidis, Vassilios;
Stockinger, Heinz;
Stamatakis, Alexandros

Publication type:

Article

The EMBRACE web service collection.

Published in:

Nucleic Acids Research, 2010, v. 38, n. suppl_2, p. W683, doi. 10.1093/nar/gkq297

By:

Pettifer, Steve;
Ison, Jon;
Kalaš, Matúš;
Thorne, Dave;
McDermott, Philip;
Jonassen, Inge;
Liaquat, Ali;
Fernández, José M.;
Rodriguez, Jose M.;
Partners, INB-;
Pisano, David G.;
Blanchet, Christophe;
Uludag, Mahmut;
Rice, Peter;
Bartaseviciute, Edita;
Rapacki, Kristoffer;
Hekkelman, Maarten;
Sand, Olivier;
Stockinger, Heinz;
Clegg, Andrew B.

Publication type:

Article

Experience using web services for biological sequence analysis.

Published in:

Briefings in Bioinformatics, 2008, v. 9, n. 6, p. 493, doi. 10.1093/bib/bbn029

By:

Stockinger, Heinz;
Attwood, Teresa;
Nadeem Chohan, Shahid;
Côté, Richard;
Cudré-Mauroux, Philippe;
Falquet, Laurent;
Fernandes, Pedro;
Finn, Robert D.;
Hupponen, Taavi;
Korpelainen, Eija;
Labarga, Alberto;
Laugraud, Aurelie;
Lima, Tania;
Pafilis, Evangelos;
Pagni, Marco;
Pettifer, Steve;
Phan, Isabelle;
Rahman, Nazim

Publication type:

Article

Performance engineering in data Grids.

Published in:

Concurrency & Computation: Practice & Experience, 2005, v. 17, n. 2-4, p. 171, doi. 10.1002/cpe.923

By:

Laure, Erwin;
Stockinger, Heinz;
Stockinger, Kurt

Publication type:

Article

Economic models for resource management and scheduling in Grid computing.

Published in:

Concurrency & Computation: Practice & Experience, 2002, v. 14, n. 13-15, p. 1507, doi. 10.1002/cpe.690

By:

Buyya, Rajkumar;
Abramson, David;
Giddy, Jonathan;
Stockinger, Heinz

Publication type:

Article

The ELIXIR Core Data Resources: fundamental infrastructure for the life sciences.

Published in:

Bioinformatics, 2020, v. 36, n. 8, p. 2636, doi. 10.1093/bioinformatics/btz959

By:

Drysdale, Rachel;
Cook, Charles E;
Petryszak, Robert;
Baillie-Gerritsen, Vivienne;
Barlow, Mary;
Gasteiger, Elisabeth;
Gruhl, Franziska;
Haas, Jürgen;
Lanfear, Jerry;
Lopez, Rodrigo;
Redaschi, Nicole;
Stockinger, Heinz;
Teixeira, Daniel;
Venkatesan, Aravind;
Forum, Elixir Core Data Resource;
Blomberg, Niklas;
Durinx, Christine;
McEntyre, Johanna

Publication type:

Article

TRAL: tandem repeat annotation library.

Published in:

Bioinformatics, 2015, v. 31, n. 18, p. 3051, doi. 10.1093/bioinformatics/btv306

By:

Schaper, Elke;
Korsunsky, Alexander;
Pečerska, Jūlija;
Messina, Antonio;
Murri, Riccardo;
Stockinger, Heinz;
Zoller, Stefan;
Xenarios, Ioannis;
Anisimova, Maria

Publication type:

Article

Optimization strategies for fast detection of positive selection on phylogenetic trees.

Published in:

Bioinformatics, 2014, v. 30, n. 8, p. 1129, doi. 10.1093/bioinformatics/btt760

By:

Valle, Mario;
Schabauer, Hannes;
Pacher, Christoph;
Stockinger, Heinz;
Stamatakis, Alexandros;
Robinson-Rechavi, Marc;
Salamin, Nicolas

Publication type:

Article

PDB_REDO: automated re-refinement of X-ray structure models in the PDB.

Published in:

Journal of Applied Crystallography, 2009, v. 42, n. 3, p. 376, doi. 10.1107/S0021889809008784

By:

Joosten, Robbie P.;
Salzemann, Jean;
Bloch, Vincent;
Stockinger, Heinz;
Berglund, Ann-Charlott;
Blanchet, Christophe;
Bongcam-Rudloff, Erik;
Combet, Christophe;
Da Costa, Ana L.;
Deleage, Gilbert;
Diarena, Matteo;
Fabbretti, Roberto;
Fettahi, Géraldine;
Flegel, Volker;
Gisel, Andreas;
Kasam, Vinod;
Kervinen, Timo;
Korpelainen, Eija;
Mattila, Kimmo;
Pagni, Marco

Publication type:

Article

Coev-web: a web platform designed to simulate and evaluate coevolving positions along a phylogenetic tree.

Published in:

BMC Bioinformatics, 2015, v. 16, p. 1, doi. 10.1186/s12859-015-0785-8

By:

Dib, Linda;
Meyer, Xavier;
Artimo, Panu;
Ioannidis, Vassilios;
Stockinger, Heinz;
Salamin, Nicolas

Publication type:

Article

Large-Scale Co-Phylogenetic Analysis on the Grid.

Published in:

International Journal of Grid & High Performance Computing, 2009, v. 1, n. 1, p. 39, doi. 10.4018/jghpc.2009010104

By:

Stockinger, Heinz;
Auch, Alexander F.;
Göker, Markus;
Meier-Kolthoff, Jan;
Stamatakis, Alexandros

Publication type:

Article

Expasy, the Swiss Bioinformatics Resource Portal, as designed by its users.

Published in:

Nucleic Acids Research, 2021, v. 49, n. W1, p. W216, doi. 10.1093/nar/gkab225

By:

Duvaud, Séverine;
Gabella, Chiara;
Lisacek, Frédérique;
Stockinger, Heinz;
Ioannidis, Vassilios;
Durinx, Christine

Publication type:

Article

Fifteen years SIB Swiss Institute of Bioinformatics: life science databases, tools and support.

Published in:

Nucleic Acids Research, 2014, v. 42, n. W1, p. W436, doi. 10.1093/nar/gku380

By:

Stockinger, Heinz;
Altenhoff, Adrian M.;
Arnold, Konstantin;
Bairoch, Amos;
Bastian, Frederic;
Bergmann, Sven;
Bougueleret, Lydie;
Bucher, Philipp;
Delorenzi, Mauro;
Lane, Lydie;
Mercier, Philippe Le;
Lisacek, Frédérique;
Michielin, Olivier;
Palagi, Patricia M.;
Rougemont, Jacques;
Schwede, Torsten;
Mering, Christian von;
Nimwegen, Erik van;
Walther, Daniel;
Xenarios, Ioannis

Publication type:

Article

Selectome update: quality control and computational improvements to a database of positive selection.

Published in:

Nucleic Acids Research, 2014, v. 42, n. D1, p. D917, doi. 10.1093/nar/gkt1065

By:

Moretti, Sébastien;
Laurenczy, Balazs;
Gharib, Walid H.;
Castella, Briséïs;
Kuzniar, Arnold;
Schabauer, Hannes;
Studer, Romain A.;
Valle, Mario;
Salamin, Nicolas;
Stockinger, Heinz;
Robinson-Rechavi, Marc

Publication type:

Article

Defining the grid: a snapshot on the current view.

Published in:

Journal of Supercomputing, 2007, v. 42, n. 1, p. 3, doi. 10.1007/s11227-006-0037-9

By:

Stockinger, Heinz

Publication type:

Article

Enabling semantic queries across federated bioinformatics databases.

Published in:

Database: The Journal of Biological Databases & Curation, 2019, v. 2019, p. N.PAG, doi. 10.1093/database/baz106

By:

Sima, Ana Claudia;
Farias, Tarcisio Mendes de;
Zbinden, Erich;
Anisimova, Maria;
Gil, Manuel;
Stockinger, Heinz;
Stockinger, Kurt;
Robinson-Rechavi, Marc;
Dessimoz, Christophe

Publication type:

Article

Publisher Correction: Federated discovery and sharing of genomic data using Beacons.

Published in:

2019

By:

Fiume, Marc;
Cupak, Miroslav;
Keenan, Stephen;
Rambla, Jordi;
de la Torre, Sabela;
Dyke, Stephanie O. M.;
Brookes, Anthony J.;
Carey, Knox;
Lloyd, David;
Goodhand, Peter;
Haeussler, Maximilian;
Baudis, Michael;
Stockinger, Heinz;
Dolman, Lena;
Lappalainen, Ilkka;
Törnroos, Juha;
Linden, Mikael;
Spalding, J. Dylan;
Ur-Rehman, Saif;
Page, Angela

Publication type:

Correction Notice

Federated discovery and sharing of genomic data using Beacons.

Published in:

Nature Biotechnology, 2019, v. 37, n. 3, p. 220, doi. 10.1038/s41587-019-0046-x

By:

Fiume, Marc;
Cupak, Miroslav;
Keenan, Stephen;
Rambla, Jordi;
de la Torre, Sabela;
Dyke, Stephanie O. M.;
Brookes, Anthony J.;
Carey, Knox;
Lloyd, David;
Goodhand, Peter;
Haeussler, Maximilian;
Baudis, Michael;
Stockinger, Heinz;
Dolman, Lena;
Lappalainen, Ilkka;
Törnroos, Juha;
Linden, Mikael;
Spalding, J. Dylan;
Ur-Rehman, Saif;
Page, Angela

Publication type:

Article