Works by Stinson, Jeremy

Results: 14

IgRepertoireConstructor: a novel algorithm for antibody repertoire construction and immunoproteogenomics analysis.

Published in:

Bioinformatics, 2015, v. 31, n. 12, p. i53, doi. 10.1093/bioinformatics/btv238

By:

Safonova, Yana;
Bonissone, Stefano;
Kurpilyansky, Eugene;
Starostina, Ekaterina;
Lapidus, Alla;
Stinson, Jeremy;
DePalatis, Laura;
Sandoval, Wendy;
Lill, Jennie;
Pevzner, Pavel A.

Publication type:

Article

Deep RNA sequencing analysis of readthrough gene fusions in human prostate adenocarcinoma and reference samples.

Published in:

BMC Medical Genomics, 2011, v. 4, n. 1, p. 11, doi. 10.1186/1755-8794-4-11

By:

Serban Nacu;
Wenlin Yuan;
Zhengyan Kan;
Bhatt, Deepali;
Rivers, Celina Sanchez;
Stinson, Jeremy;
Peters, Brock A.;
Modrusan, Zora;
Jung, Kenneth;
Seshagiri, Somasekar;
Wu, Thomas D.

Publication type:

Article

Comprehensive genomic analysis identifies SOX2 as a frequently amplified gene in small-cell lung cancer.

Published in:

Nature Genetics, 2012, v. 44, n. 10, p. 1111, doi. 10.1038/ng.2405

By:

Rudin, Charles M;
Durinck, Steffen;
Stawiski, Eric W;
Poirier, John T;
Modrusan, Zora;
Shames, David S;
Bergbower, Emily A;
Guan, Yinghui;
Shin, James;
Guillory, Joseph;
Rivers, Celina Sanchez;
Foo, Catherine K;
Bhatt, Deepali;
Stinson, Jeremy;
Gnad, Florian;
Haverty, Peter M;
Gentleman, Robert;
Chaudhuri, Subhra;
Janakiraman, Vasantharajan;
Jaiswal, Bijay S

Publication type:

Article

Massively parallel single-cell B-cell receptor sequencing enables rapid discovery of diverse antigen-reactive antibodies.

Published in:

Communications Biology, 2019, v. 2, n. 1, p. N.PAG, doi. 10.1038/s42003-019-0551-y

By:

Goldstein, Leonard D.;
Chen, Ying-Jiun J.;
Wu, Jia;
Chaudhuri, Subhra;
Hsiao, Yi-Chun;
Schneider, Kellen;
Hoi, Kam Hon;
Lin, Zhonghua;
Guerrero, Steve;
Jaiswal, Bijay S.;
Stinson, Jeremy;
Antony, Aju;
Pahuja, Kanika Bajaj;
Seshasayee, Dhaya;
Modrusan, Zora;
Hötzel, Isidro;
Seshagiri, Somasekar

Publication type:

Article

Comparison of Sequencing Platforms for Single Nucleotide Variant Calls in a Human Sample.

Published in:

PLoS ONE, 2013, v. 8, n. 2, p. 1, doi. 10.1371/journal.pone.0055089

By:

Ratan, Aakrosh;
Miller, Webb;
Guillory, Joseph;
Stinson, Jeremy;
Seshagiri, Somasekar;
Schuster, Stephan C.

Publication type:

Article

Silencing of retrotransposons by SET DB1 inhibits the interferon response in acute myeloid leukemia.

Published in:

Journal of Cell Biology, 2017, v. 216, n. 11, p. 3535, doi. 10.1083/jcb.201612160

By:

Cuellar, Trinna L.;
Herzner, Anna-Maria;
Xiaotian Zhang;
Goyal, Yogesh;
Watanabe, Colin;
Friedman, Brad A.;
Janakiraman, Vasantharajan;
Durinck, Steffen;
Stinson, Jeremy;
Arnott, David;
Cheung, Tommy K.;
Chaudhuri, Subhra;
Modrusan, Zora;
Doerr, Jonas Martin;
Classon, Marie;
Haley, Benjamin

Publication type:

Article

Highly efficient somatic-mutation identification using Escherichia coli mismatch-repair detection.

Published in:

Nature Methods, 2007, v. 4, n. 9, p. 713, doi. 10.1038/nmeth1081

By:

Peters, Brock A.;
Zhengyan Kan;
Sebisanovic, Dragan;
Pujara, Kanan;
Zhiyong Wang;
Hong, Peter;
Chow, Bernard;
Stinson, Jeremy;
Carlton, Victoria E. H.;
Pham, Thinh Q.;
Stern, Howard;
Waring, Paul;
Hillan, Kenneth J.;
Eberhard, David A.;
de Sauvage, Frederic;
Jianbiao Zheng;
Faham, Malek;
Seshagiri, Somasekar

Publication type:

Article

Corrigendum: A broadly protective therapeutic antibody against influenza B virus with two mechanisms of action.

Published in:

Nature Communications, 2017, v. 8, n. 5, p. 15779, doi. 10.1038/ncomms15779

By:

Chai, Ning;
Swem, Lee R.;
Park, Summer;
Nakamura, Gerald;
Chiang, Nancy;
Estevez, Alberto;
Fong, Rina;
Kamen, Lynn;
Kho, Elviza;
Reichelt, Mike;
Lin, Zhonghua;
Chiu, Henry;
Skippington, Elizabeth;
Modrusan, Zora;
Stinson, Jeremy;
Xu, Min;
Lupardus, Patrick;
Ciferri, Claudio;
Tan, Man-Wah

Publication type:

Article

A broadly protective therapeutic antibody against influenza B virus with two mechanisms of action.

Published in:

Nature Communications, 2017, v. 8, n. 1, p. 14234, doi. 10.1038/ncomms14234

By:

Chai, Ning;
Swem, Lee R.;
Park, Summer;
Nakamura, Gerald;
Chiang, Nancy;
Estevez, Alberto;
Fong, Rina;
Kamen, Lynn;
Kho, Elviza;
Reichelt, Mike;
Lin, Zhonghua;
Chiu, Henry;
Skippington, Elizabeth;
Modrusan, Zora;
Stinson, Jeremy;
Xu, Min;
Lupardus, Patrick;
Ciferri, Claudio;
Tan, Man-Wah

Publication type:

Article

CD40 Pathway Activation Status Predicts Response to CD40 Therapy in Diffuse Large B Cell Lymphoma.

Published in:

Science Translational Medicine, 2011, v. 3, n. 74, p. 1, doi. 10.1126/scitranslmed.3001620

By:

Burington, Bart;
Yue, Peng;
Shi, Xiaoyan;
Advani, Ranjana;
Lau, Jeffrey T.;
Tan, Jenille;
Stinson, Susanna;
Stinson, Jeremy;
Januario, Thomas;
Vos, Sven de;
Ansell, Stephen;
Forero-Torres, Andres;
Fedorowicz, Grazyna;
Yang, Teddy T. C.;
Elkins, Kristi;
Du, Changchun;
Mohan, Sankar;
Yu, Nancy;
Modrusan, Zora;
Seshagiri, Somasekar

Publication type:

Article

Recurrent R-spondin fusions in colon cancer.

Published in:

Nature, 2012, v. 488, n. 7413, p. 660, doi. 10.1038/nature11282

By:

Seshagiri, Somasekar;
Stawiski, Eric W.;
Durinck, Steffen;
Modrusan, Zora;
Storm, Elaine E.;
Conboy, Caitlin B.;
Chaudhuri, Subhra;
Guan, Yinghui;
Janakiraman, Vasantharajan;
Jaiswal, Bijay S.;
Guillory, Joseph;
Ha, Connie;
Dijkgraaf, Gerrit J. P.;
Stinson, Jeremy;
Gnad, Florian;
Huntley, Melanie A.;
Degenhardt, Jeremiah D.;
Haverty, Peter M.;
Bourgon, Richard;
Wang, Weiru

Publication type:

Article

Diverse somatic mutation patterns and pathway alterations in human cancers.

Published in:

Nature, 2010, v. 466, n. 7308, p. 869, doi. 10.1038/nature09208

By:

Zhengyan Kan;
Jaiswal, Bijay S.;
Stinson, Jeremy;
Janakiraman, Vasantharajan;
Bhatt, Deepali;
Stern, Howard M.;
Peng Yue;
Haverty, Peter M.;
Bourgon, Richard;
Jianbiao Zheng;
Moorhead, Martin;
Chaudhuri, Subhra;
Tomsho, Lynn P.;
Peters, Brock A.;
Pujara, Kanan;
Cordes, Shaun;
Davis, David P.;
Carlton, Victoria E. H.;
Wenlin Yuan;
Li Li

Publication type:

Article

The mutation spectrum revealed by paired genome sequences from a lung cancer patient.

Published in:

Nature, 2010, v. 465, n. 7297, p. 473, doi. 10.1038/nature09004

By:

Lee, William;
Jiang, Zhaoshi;
Liu, Jinfeng;
Haverty, Peter M.;
Guan, Yinghui;
Stinson, Jeremy;
Yue, Peng;
Zhang, Yan;
Pant, Krishna P.;
Bhatt, Deepali;
Ha, Connie;
Johnson, Stephanie;
Kennemer, Michael I.;
Mohan, Sankar;
Nazarenko, Igor;
Watanabe, Colin;
Sparks, Andrew B.;
Shames, David S.;
Gentleman, Robert;
de Sauvage, Frederic J.

Publication type:

Article

Massively parallel nanowell-based single-cell gene expression profiling.

Published in:

BMC Genomics, 2017, v. 18, p. 1, doi. 10.1186/s12864-017-3893-1

By:

Goldstein, Leonard D.;
Ying-Jiun Jasmine Chen;
Dunne, Jude;
Mir, Alain;
Hubschle, Hermann;
Guillory, Joseph;
Wenlin Yuan;
Jingli Zhang;
Stinson, Jeremy;
Jaiswal, Bijay;
Pahuja, Kanika Bajaj;
Mann, Ishminder;
Schaal, Thomas;
Chan, Leo;
Anandakrishnan, Sangeetha;
Chun-wah Lin;
Espinoza, Patricio;
Husain, Syed;
Shapiro, Harris;
Swaminathan, Karthikeyan

Publication type:

Article