Works matching AU Stevens, John R.

Results: 30

metahdep: meta-analysis of hierarchically dependent gene expression studies.

Published in:

Bioinformatics, 2009, v. 25, n. 19, p. 2619, doi. 10.1093/bioinformatics/btp468

By:

Stevens, John R.;
Nicholas, Gabriel

Publication type:

Article

Novel functional view of the crocidolite asbestos-treated A549 human lung epithelial transcriptome reveals an intricate network of pathways with opposing functions.

Published in:

BMC Genomics, 2008, v. 9, p. 1, doi. 10.1186/1471-2164-9-376

By:

Hevel, Joan M.;
Olson-Buelow, Laura C.;
Ganesan, Balasubramanian;
Stevens, John R.;
Hardman, Jared P.;
Aust, Ann E.

Publication type:

Article

The NF-κB signalling pathway in colorectal cancer: associations between dysregulated gene and miRNA expression.

Published in:

Journal of Cancer Research & Clinical Oncology, 2018, v. 144, n. 2, p. 269, doi. 10.1007/s00432-017-2548-6

By:

Slattery, Martha L.;
Mullany, Lila E.;
Sakoda, Lori;
Samowitz, Wade S.;
Wolff, Roger K.;
Stevens, John R.;
Herrick, Jennifer S.

Publication type:

Article

MicroRNA profiles in colorectal carcinomas, adenomas and normal colonic mucosa: variations in miRNA expression and disease progression.

Published in:

Carcinogenesis, 2016, v. 37, n. 3, p. 245, doi. 10.1093/carcin/bgv249

By:

Slattery, Martha L.;
Herrick, Jennifer S.;
Pellatt, Daniel F.;
Stevens, John R.;
Mullany, Lila E.;
Wolff, Erica;
Hoffman, Michael D.;
Samowitz, Wade S.;
Wolff, Roger K.

Publication type:

Article

Accounting for Dependence Induced by Weighted KNN Imputation in Paired Samples, Motivated by a Colorectal Cancer Study.

Published in:

PLoS ONE, 2015, v. 10, n. 4, p. 1, doi. 10.1371/journal.pone.0119876

By:

Suyundikov, Anvar;
Stevens, John R.;
Corcoran, Christopher;
Herrick, Jennifer;
Wolff, Roger K.;
Slattery, Martha L.

Publication type:

Article

Assessing Numerical Dependence in Gene Expression Summaries with the Jackknife Expression Difference.

Published in:

PLoS ONE, 2012, v. 7, n. 8, p. 1, doi. 10.1371/journal.pone.0039570

By:

Stevens, John R.;
Nicholas, Gabriel;
Hsiao, Chuhsing Kate

Publication type:

Article

Treatment of Late Stage Disease in a Model of Arenaviral Hemorrhagic Fever: T-705 Efficacy and Reduced Toxicity Suggests an Alternative to Ribavirin.

Published in:

PLoS ONE, 2008, v. 3, n. 11, p. 1, doi. 10.1371/journal.pone.0003725

By:

Gowen, Brian B.;
Smee, Donald F.;
Min-Hui Wong;
Hall, Jeffery O.;
Kie-Hoon Jung;
Bailey, Kevin W.;
Stevens, John R.;
Furuta, Yousuke;
Morrey, John D.

Publication type:

Article

Accounting for Missing Data in Clinical Research.

Published in:

2016

By:

Stevens, John R.;
Suyundikov, Anvar;
Slattery, Martha L.

Publication type:

commentary

A comparison of multiple testing adjustment methods with block-correlation positively-dependent tests.

Published in:

PLoS ONE, 2017, v. 12, n. 4, p. 1, doi. 10.1371/journal.pone.0176124

By:

Stevens, John R.;
Al Masud, Abdullah;
Suyundikov, Anvar

Publication type:

Article

Poor maternal nutrition during gestation in sheep alters prenatal muscle growth and development in offspring.

Published in:

Journal of Animal Science, 2020, v. 98, n. 1, p. 1, doi. 10.1093/jas/skz388

By:

Gauvin, Mary C.;
Pillai, Sambhu M.;
Reed, Sarah A.;
Stevens, John R.;
Hoffman, Maria L.;
Jones, Amanda K.;
Zinn, Steven A.;
Govoni, Kristen E.

Publication type:

Article

Incorporation of subject-level covariates in quantile normalization of miRNA data.

Published in:

BMC Genomics, 2015, v. 16, p. 1, doi. 10.1186/s12864-015-2199-4

By:

Suyundikov, Anvar;
Stevens, John R.;
Corcoran, Christopher;
Herrick, Jennifer;
Wolff, Roger K.;
Slattery, Martha L.

Publication type:

Article

MicroRNA‐transcription factor interactions and their combined effect on target gene expression in colon cancer cases.

Published in:

Genes, Chromosomes & Cancer, 2018, v. 57, n. 4, p. 192, doi. 10.1002/gcc.22520

By:

Mullany, Lila E.;
Herrick, Jennifer S.;
Wolff, Roger K.;
Stevens, John R.;
Samowitz, Wade;
Slattery, Martha L.

Publication type:

Article

The miRNA landscape of colorectal polyps.

Published in:

Genes, Chromosomes & Cancer, 2017, v. 56, n. 5, p. 347, doi. 10.1002/gcc.22436

By:

Slattery, Martha L.;
Herrick, Jennifer S.;
Wolff, Roger K.;
Mullany, Lila E.;
Stevens, John R.;
Samowitz, Wade

Publication type:

Article

The academic collaborative statistician: Research, training and evaluation.

Published in:

Stat, 2022, v. 11, n. 1, p. 1, doi. 10.1002/sta4.483

By:

Griffith, Emily H.;
Sharp, Julia L.;
Bridges, William C.;
Craig, Bruce A.;
Hanford, Kathryn J.;
Stevens, John R.

Publication type:

Article

Diet and lifestyle factors associated with miRNA expression in colorectal tissue.

Published in:

Pharmacogenomics & Personalized Medicine, 2017, v. 10, p. 1, doi. 10.2147/PGPM.S117796

By:

Slattery, Martha L.;
Herrick, Jennifer S.;
Mullany, Lila E.;
Stevens, John R.;
Wolff, Roger K.

Publication type:

Article

Identifying factors associated with the direction and significance of microRNA tumor-normal expression differences in colorectal cancer.

Published in:

2017

By:

Stevens, John R.;
Herrick, Jennifer S.;
Wolff, Roger K.;
Slattery, Martha L.

Publication type:

journal article

Comment on 'Climate and agricultural land use change impacts on streamflow in the upper midwestern United States,' by Satish C. Gupta et al.

Published in:

Water Resources Research, 2016, v. 52, n. 9, p. 7523, doi. 10.1002/2015WR018476

By:

Belmont, Patrick;
Stevens, John R.;
Czuba, Jonathan A.;
Kumarasamy, Karthik;
Kelly, Sara A.

Publication type:

Article

Sensing Biophysical Alterations of Human Lung Epithelial Cells (A549) in the Context of Toxicity Effects of Diesel Exhaust Particles.

Published in:

Cell Biochemistry & Biophysics, 2013, v. 67, n. 3, p. 1147, doi. 10.1007/s12013-013-9618-4

By:

Wu, Yangzhe;
McEwen, Gerald D.;
Tang, Mingjie;
Yu, Tian;
Dimmick, James T.;
Zhou, Anhong;
Gilbertson, Timothy A.;
Coulombe Jr, Roger A.;
Stevens, John R.

Publication type:

Article

A Meta-Analytic Review of Corridor Effectiveness.

Published in:

Conservation Biology, 2010, v. 24, n. 3, p. 660, doi. 10.1111/j.1523-1739.2010.01450.x

By:

GILBERT‐NORTON, LYNNE;
WILSON, RYAN;
STEVENS, JOHN R.;
BEARD, KAREN H.

Publication type:

Article

Plant–soil feedbacks: a meta-analytical review.

Published in:

Ecology Letters, 2008, v. 11, n. 9, p. 980, doi. 10.1111/j.1461-0248.2008.01209.x

By:

Kulmatiski, Andrew;
Beard, Karen H.;
Stevens, John R.;
Cobbold, Stephanie M.

Publication type:

Article

Alterations in microRNA expression associated with alcohol consumption in rectal cancer subjects.

Published in:

2017

By:

Mullany, Lila;
Herrick, Jennifer;
Wolff, Roger;
Stevens, John;
Slattery, Martha;
Mullany, Lila E;
Herrick, Jennifer S;
Wolff, Roger K;
Stevens, John R;
Slattery, Martha L

Publication type:

journal article

Increased Susceptibility to Atrial Fibrillation Secondary to Atrial Fibrosis in Transgenic Goats Expressing Transforming Growth Factor-β1.

Published in:

Journal of Cardiovascular Electrophysiology, 2016, v. 27, n. 10, p. 1220, doi. 10.1111/jce.13049

By:

POLEJAEVA, IRINA A.;
RANJAN, RAVI;
DAVIES, CHRISTOPHER J.;
REGOUSKI, MISHA;
HALL, JUSTIN;
OLSEN, AARON L.;
MENG, QINGGANG;
RUTIGLIANO, HELOISA M.;
DOSDALL, DEREK J.;
ANGEL, NATHAN A.;
SACHSE, FRANK B.;
SEIDEL, THOMAS;
THOMAS, AARON J.;
STOTT, RUSTY;
PANTER, KIP E.;
LEE, PAMELA M.;
VAN WETTERE, ARNAUD J.;
STEVENS, JOHN R.;
WANG, ZHONGDE;
MACLEOD, ROB S.

Publication type:

Article

A shortcut for multiple testing on the directed acyclic graph of gene ontology.

Published in:

BMC Bioinformatics, 2014, v. 15, n. 1, p. 1, doi. 10.1186/s12859-014-0349-3

By:

Saunders, Garrett;
Stevens, John R.;
Clay Isom, S.

Publication type:

Article

A comparison of probe-level and probesetmodels for small-sample gene expression data.

Published in:

BMC Bioinformatics, 2010, v. 11, p. 281, doi. 10.1186/1471-2105-11-281

By:

Stevens, John R.;
Bell, Jason L.;
Aston, Kenneth I.;
White, Kenneth L.

Publication type:

Article

Combining Affymetrix microarray results.

Published in:

BMC Bioinformatics, 2005, v. 6, p. 57, doi. 10.1186/1471-2105-6-57

By:

John R. Stevens;
Doerge, R. W.

Publication type:

Article

The PI3K/AKT signaling pathway: Associations of miRNAs with dysregulated gene expression in colorectal cancer.

Published in:

Molecular Carcinogenesis, 2018, v. 57, n. 2, p. 243, doi. 10.1002/mc.22752

By:

Slattery, Martha L.;
Mullany, Lila E.;
Sakoda, Lori C.;
Wolff, Roger K.;
Stevens, John R.;
Samowitz, Wade S.;
Herrick, Jennifer S.

Publication type:

Article

Transcription factor-microRNA associations and their impact on colorectal cancer survival.

Published in:

Molecular Carcinogenesis, 2017, v. 56, n. 11, p. 2512, doi. 10.1002/mc.22698

By:

Mullany, Lila E.;
Herrick, Jennifer S.;
Wolff, Roger K.;
Stevens, John R.;
Samowitz, Wade;
Slattery, Martha L.

Publication type:

Article

Most soil trophic guilds increase plant growth: a meta-analytical review.

Published in:

Oikos, 2014, v. 123, n. 12, p. 1409, doi. 10.1111/oik.01767

By:

Kulmatiski, Andrew;
Anderson‐Smith, Andrew;
Beard, Karen H.;
Doucette‐Riise, Stephen;
Mazzacavallo, Michael;
Nolan, Nicole E.;
Ramirez, Ricardo A.;
Stevens, John R.

Publication type:

Article

Power in pairs: assessing the statistical value of paired samples in tests for differential expression.

Published in:

BMC Genomics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12864-018-5236-2

By:

Stevens, John R.;
Herrick, Jennifer S.;
Wolff, Roger K.;
Slattery, Martha L.

Publication type:

Article

The implementation of random survival forests in conflict management data: An examination of power sharing and third party mediation in post-conflict countries.

Published in:

PLoS ONE, 2021, v. 16, n. 5, p. 1, doi. 10.1371/journal.pone.0250963

By:

Whetten, Andrew B.;
Stevens, John R.;
Cann, Damon

Publication type:

Article