Works by Stanley, Natalie

Results: 17

ANTIRETROVIRAL THERAPY REPAIRS CD4 T CELL DYSREGULATION IN PEOPLE LIVING WITH HIV.

Published in:

Topics in Antiviral Medicine, 2023, v. 31, n. 2, p. 161

By:

Sponaugle, Alexis;
Weideman, Ann Marie;
Ranek, Jolene;
Atassi, Gatphan;
Kuritzkes, Daniel;
Andrade, Adriana;
Adimora, Adaora;
Archin, Nancie;
Margolis, David;
Gay, Cynthia;
Vincent, Benjamin;
Stanley, Natalie;
Hudgens, Michael;
Eron, Joseph J.;
Goonetilleke, Nilu

Publication type:

Article

Differential Dynamics of the Maternal Immune System in Healthy Pregnancy and Preeclampsia.

Published in:

Frontiers in Immunology, 2019, p. N.PAG, doi. 10.3389/fimmu.2019.01305

By:

Han, Xiaoyuan;
Ghaemi, Mohammad S.;
Ando, Kazuo;
Peterson, Laura S.;
Ganio, Edward A.;
Tsai, Amy S.;
Gaudilliere, Dyani K.;
Stelzer, Ina A.;
Einhaus, Jakob;
Bertrand, Basile;
Stanley, Natalie;
Culos, Anthony;
Tanada, Athena;
Hedou, Julien;
Tsai, Eileen S.;
Fallahzadeh, Ramin;
Wong, Ronald J.;
Judy, Amy E.;
Winn, Virginia D.;
Druzin, Maurice L.

Publication type:

Article

Cellograph: a semi-supervised approach to analyzing multi-condition single-cell RNA-sequencing data using graph neural networks.

Published in:

BMC Bioinformatics, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s12859-024-05641-9

By:

Shahir, Jamshaid A.;
Stanley, Natalie;
Purvis, Jeremy E.

Publication type:

Article

Integrating temporal single-cell gene expression modalities for trajectory inference and disease prediction.

Published in:

Genome Biology, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s13059-022-02749-0

By:

Ranek, Jolene S.;
Stanley, Natalie;
Purvis, Jeremy E.

Publication type:

Article

Cezanne/OTUD7B is a cell cycle‐regulated deubiquitinase that antagonizes the degradation of APC/C substrates.

Published in:

EMBO Journal, 2018, v. 37, n. 16, p. 1, doi. 10.15252/embj.201798701

By:

Bonacci, Thomas;
Suzuki, Aussie;
Grant, Gavin D.;
Stanley, Natalie;
Cook, Jeanette G.;
Brown, Nicholas G.;
Emanuele, Michael J.

Publication type:

Article

Conditional similarity triplets enable covariate-informed representations of single-cell data.

Published in:

BMC Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12859-025-06069-5

By:

Chen, Chi-Jane;
Yi, Haidong;
Stanley, Natalie

Publication type:

Article

Three Months of Treatment With Esketamine: Effects on Depression, Insomnia, and Weight.

Published in:

Primary Care Companion for CNS Disorders (2155-7772), 2020, v. 22, n. 4, p. e1, doi. 10.4088/PCC.19l02555

By:

Stultz, Debra J.;
Stanley, Natalie;
Gills, Thomas;
Osburn, Savanna;
Burns, Tyler;
Moomaw, Seth;
Pawlowska-Wajswol, Sylvia;
Walton, Robin

Publication type:

Article

Integrated trajectories of the maternal metabolome, proteome, and immunome predict labor onset.

Published in:

Science Translational Medicine, 2021, v. 13, n. 592, p. 1, doi. 10.1126/scitranslmed.abd9898

By:

Stelzer, Ina A.;
Ghaemi, Mohammad S.;
Han, Xiaoyuan;
Ando, Kazuo;
Hédou, Julien J.;
Feyaerts, Dorien;
Peterson, Laura S.;
Rumer, Kristen K.;
Tsai, Eileen S.;
Ganio, Edward A.;
Gaudillière, Dyani K.;
Tsai, Amy S.;
Choisy, Benjamin;
Gaigne, Lea P.;
Verdonk, Franck;
Jacobsen, Danielle;
Gavasso, Sonia;
Traber, Gavin M.;
Ellenberger, Mathew;
Stanley, Natalie

Publication type:

Article

A year-long immune profile of the systemic response in acute stroke survivors.

Published in:

2019

By:

Tsai, Amy S;
Berry, Kacey;
Beneyto, Maxime M;
Gaudilliere, Dyani;
Ganio, Edward A;
Culos, Anthony;
Ghaemi, Mohammad S;
Choisy, Benjamin;
Djebali, Karim;
Einhaus, Jakob F;
Bertrand, Basile;
Tanada, Athena;
Stanley, Natalie;
Fallahzadeh, Ramin;
Baca, Quentin;
Quach, Lisa N;
Osborn, Elizabeth;
Drag, Lauren;
Lansberg, Maarten G;
Angst, Martin S

Publication type:

journal article

Proteomic signatures predict preeclampsia in individual cohorts but not across cohorts – implications for clinical biomarker studies.

Published in:

Journal of Maternal-Fetal & Neonatal Medicine, 2022, v. 35, n. 25, p. 5621, doi. 10.1080/14767058.2021.1888915

By:

Ghaemi, Mohammad S.;
Tarca, Adi L.;
Romero, Roberto;
Stanley, Natalie;
Fallahzadeh, Ramin;
Tanada, Athena;
Culos, Anthony;
Ando, Kazuo;
Han, Xiaoyuan;
Blumenfeld, Yair J.;
Druzin, Maurice L.;
El-Sayed, Yasser Y.;
Gibbs, Ronald S.;
Winn, Virginia D.;
Contrepois, Kevin;
Ling, Xuefeng B.;
Wong, Ronald J.;
Shaw, Gary M.;
Stevenson, David K.;
Gaudilliere, Brice

Publication type:

Article

Author Correction: Preferential inhibition of adaptive immune system dynamics by glucocorticoids in patients after acute surgical trauma.

Published in:

2020

By:

Ganio, Edward A.;
Stanley, Natalie;
Lindberg-Larsen, Viktoria;
Einhaus, Jakob;
Tsai, Amy S.;
Verdonk, Franck;
Culos, Anthony;
Ghaemi, Sajjad;
Rumer, Kristen K.;
Stelzer, Ina A.;
Gaudilliere, Dyani;
Tsai, Eileen;
Fallahzadeh, Ramin;
Choisy, Benjamin;
Kehlet, Henrik;
Aghaeepour, Nima;
Angst, Martin S.;
Gaudilliere, Brice

Publication type:

Correction Notice

VoPo leverages cellular heterogeneity for predictive modeling of single-cell data.

Published in:

Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-020-17569-8

By:

Stanley, Natalie;
Stelzer, Ina A.;
Tsai, Amy S.;
Fallahzadeh, Ramin;
Ganio, Edward;
Becker, Martin;
Phongpreecha, Thanaphong;
Nassar, Huda;
Ghaemi, Sajjad;
Maric, Ivana;
Culos, Anthony;
Chang, Alan L.;
Xenochristou, Maria;
Han, Xiaoyuan;
Espinosa, Camilo;
Rumer, Kristen;
Peterson, Laura;
Verdonk, Franck;
Gaudilliere, Dyani;
Tsai, Eileen

Publication type:

Article

Preferential inhibition of adaptive immune system dynamics by glucocorticoids in patients after acute surgical trauma.

Published in:

Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-020-17565-y

By:

Ganio, Edward A.;
Stanley, Natalie;
Lindberg-Larsen, Viktoria;
Einhaus, Jakob;
Tsai, Amy S.;
Verdonk, Franck;
Culos, Anthony;
Gahemi, Sajjad;
Rumer, Kristen K.;
Stelzer, Ina A.;
Gaudilliere, Dyani;
Tsai, Eileen;
Fallahzadeh, Ramin;
Choisy, Benjamin;
Kehlet, Henrik;
Aghaeepour, Nima;
Angst, Martin S.;
Gaudilliere, Brice

Publication type:

Article

Multiomics modeling of the immunome, transcriptome, microbiome, proteome and metabolome adaptations during human pregnancy.

Published in:

Bioinformatics, 2019, v. 35, n. 1, p. 95, doi. 10.1093/bioinformatics/bty537

By:

Ghaemi, Mohammad Sajjad;
Culos, Anthony;
Stanley, Natalie;
Tanada, Athena;
Tsai, Amy;
Gaudilliere, Dyani;
Ganio, Edward;
Han, Xiaoyuan;
Ando, Kazuo;
McNeil, Leslie;
Tingle, Martha;
Angst, Martin S;
Gaudilliere, Brice;
Aghaeepour, Nima;
Sirota, Marina;
Winn, Virginia D;
Druzin, Maurice L;
Gibbs, Ronald;
Nia, Vahid Partovi;
Agard, Bruno

Publication type:

Article

DELVE: feature selection for preserving biological trajectories in single-cell data.

Published in:

Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-46773-z

By:

Ranek, Jolene S.;
Stallaert, Wayne;
Milner, J. Justin;
Redick, Margaret;
Wolff, Samuel C.;
Beltran, Adriana S.;
Stanley, Natalie;
Purvis, Jeremy E.

Publication type:

Article

Benchmarking differential abundance methods for finding condition-specific prototypical cells in multi-sample single-cell datasets.

Published in:

Genome Biology, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s13059-023-03143-0

By:

Yi, Haidong;
Plotkin, Alec;
Stanley, Natalie

Publication type:

Article

The Power of Networks: Six Principles That Connect Our Lives.

Published in:

2017

By:

STANLEY, NATALIE

Publication type:

Book Review