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MarineMetagenomeDB: a public repository for curated and standardized metadata for marine metagenomes.
- Published in:
- Environmental Microbiome, 2022, v. 17, n. 1, p. 1, doi. 10.1186/s40793-022-00449-7
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- Article
PredicTF: prediction of bacterial transcription factors in complex microbial communities using deep learning.
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- Environmental Microbiome, 2022, v. 17, n. 1, p. 1, doi. 10.1186/s40793-021-00394-x
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- Article
Molecular Phylogenetics 2016.
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- BioMed Research International, 2016, v. 2016, p. 1, doi. 10.1155/2016/9029306
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- Article
Efficient eigenvalue counts for tree-like networks.
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- Journal of Complex Networks, 2022, v. 10, n. 5, p. 1, doi. 10.1093/comnet/cnac040
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- Article
Disturbance of phylogenetic layer-specific adaptation of human brain gene expression in Alzheimer's disease.
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- Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-99760-5
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- Article
Author Correction: Disturbance of phylogenetic layer-specific adaptation of human brain gene expression in Alzheimer's disease.
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- 2021
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- Correction Notice
Disturbance of phylogenetic layer-specific adaptation of human brain gene expression in Alzheimer's disease.
- Published in:
- Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-99760-5
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- Article
SMORE: Synteny Modulator of Repetitive Elements.
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- Life (2075-1729), 2017, v. 7, n. 4, p. 42, doi. 10.3390/life7040042
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- Article
The Expansion of Animal MicroRNA Families Revisited.
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- Life (2075-1729), 2015, v. 5, n. 1, p. 905, doi. 10.3390/life5010905
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- Article
Toward a Systematic Assessment of Sex Differences in Cystic Fibrosis.
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- Journal of Personalized Medicine, 2023, v. 13, n. 6, p. 924, doi. 10.3390/jpm13060924
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- Article
Chromosome‐level Thlaspi arvense genome provides new tools for translational research and for a newly domesticated cash cover crop of the cooler climates.
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- Plant Biotechnology Journal, 2022, v. 20, n. 5, p. 944, doi. 10.1111/pbi.13775
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- Article
Inferring chemical reaction patterns using rule composition in graph grammars.
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- Journal of Systems Chemistry, 2013, v. 4, n. 1, p. 1, doi. 10.1186/1759-2208-4-4
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- Article
Evolution of metabolic networks: a computational frame-work.
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- Journal of Systems Chemistry, 2010, v. 1, n. 1, p. 1, doi. 10.1186/1759-2208-1-4
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- Publication type:
- Article
Unusual Occurrence of Two Bona-Fide CCA-Adding Enzymes in Dictyostelium discoideum.
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- International Journal of Molecular Sciences, 2020, v. 21, n. 15, p. 5210, doi. 10.3390/ijms21155210
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- Article
FORMAN–RICCI CURVATURE FOR HYPERGRAPHS.
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- Advances in Complex Systems, 2021, v. 24, n. 1, p. 1, doi. 10.1142/S021952592150003X
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- Article
Tailored machine learning models for functional RNA detection in genome-wide screens.
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- NAR Genomics & Bioinformatics, 2023, v. 5, n. 3, p. 1, doi. 10.1093/nargab/lqad072
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- Article
Molecular Phylogenetics 2014.
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- BioMed Research International, 2015, v. 2015, p. 1, doi. 10.1155/2015/919251
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- Article
The Genome of the "Sea Vomit" Didemnum vexillum.
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- Life (2075-1729), 2021, v. 11, n. 12, p. 1377, doi. 10.3390/life11121377
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- Article
The RNA workbench: best practices for RNA and high-throughput sequencing bioinformatics in Galaxy.
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- Nucleic Acids Research, 2017, v. 45, n. W1, p. W560, doi. 10.1093/nar/gkx409
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- Article
RIsearch2: suffix array-based large-scale prediction of RNA-RNA interactions and siRNA off-targets.
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- Nucleic Acids Research, 2017, v. 45, n. 8, p. 1, doi. 10.1093/nar/gkw1325
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- Article
Applicability of a computational design approach for synthetic riboswitches.
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- Nucleic Acids Research, 2017, v. 45, n. 7, p. 4108, doi. 10.1093/nar/gkw1267
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- Article
An updated human snoRNAome.
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- Nucleic Acids Research, 2016, v. 44, n. 11, p. 5068, doi. 10.1093/nar/gkw386
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- Article
Optimizing RNA structures by sequence extensions using RNAcop.
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- Nucleic Acids Research, 2015, v. 43, n. 17, p. 8135, doi. 10.1093/nar/gkv813
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- Article
Towards a comprehensive picture of alloacceptor tRNA remolding in metazoan mitochondrial genomes.
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- Nucleic Acids Research, 2015, v. 43, n. 16, p. 8044, doi. 10.1093/nar/gkv746
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- Article
The ancestor of modern Holozoa acquired the CCA-adding enzyme from Alphaproteobacteria by horizontal gene transfer.
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- Nucleic Acids Research, 2015, v. 43, n. 14, p. 6739, doi. 10.1093/nar/gkv631
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- Article
The CHR site: definition and genome-wide identification of a cell cycle transcriptional element.
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- Nucleic Acids Research, 2014, v. 42, n. 16, p. 10331, doi. 10.1093/nar/gku696
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- Article
Widespread purifying selection on RNA structure in mammals.
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- Nucleic Acids Research, 2013, v. 41, n. 17, p. 8220, doi. 10.1093/nar/gkt596
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- Article
The RNAsnp web server: predicting SNP effects on local RNA secondary structure.
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- Nucleic Acids Research, 2013, v. 41, p. W475, doi. 10.1093/nar/gkt291
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- Article
De novo design of a synthetic riboswitch that regulates transcription termination.
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- Nucleic Acids Research, 2013, v. 41, n. 4, p. 2541, doi. 10.1093/nar/gks1330
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- Article
The common ancestral core of vertebrate and fungal telomerase RNAs.
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- Nucleic Acids Research, 2013, v. 41, n. 1, p. 450, doi. 10.1093/nar/gks980
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- Article
RNA folding with soft constraints: reconciliation of probing data and thermodynamic secondary structure prediction.
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- Nucleic Acids Research, 2012, v. 40, n. 10, p. 4261, doi. 10.1093/nar/gks009
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- Article
Improved systematic tRNA gene annotation allows new insights into the evolution of mitochondrial tRNA structures and into the mechanisms of mitochondrial genome rearrangements.
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- Nucleic Acids Research, 2012, v. 40, n. 7, p. 2833, doi. 10.1093/nar/gkr1131
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- Article
Genome-wide transcriptome analysis of the plant pathogen Xanthomonas identifies sRNAs with putative virulence functions.
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- Nucleic Acids Research, 2012, v. 40, n. 5, p. 2020, doi. 10.1093/nar/gkr904
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- Article
DARIO: a ncRNA detection and analysis tool for next-generation sequencing experiments.
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- Nucleic Acids Research, 2011, v. 39, n. suppl_2, p. W112, doi. 10.1093/nar/gkr357
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- Article
RNApredator: fast accessibility-based prediction of sRNA targets.
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- Nucleic Acids Research, 2011, v. 39, n. suppl_2, p. W149, doi. 10.1093/nar/gkr467
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- Article
Accurate and efficient reconstruction of deep phylogenies from structured RNAs.
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- Nucleic Acids Research, 2009, v. 37, n. 18, p. 6184, doi. 10.1093/nar/gkp600
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- Article
Non-coding RNA annotation of the genome of Trichoplax adhaerens.
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- Nucleic Acids Research, 2009, v. 37, n. 5, p. 1602, doi. 10.1093/nar/gkn1084
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- Article
tRNAdb 2009: compilation of tRNA sequences and tRNA genes.
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- Nucleic Acids Research, 2009, v. 37, n. suppl_1, p. D159, doi. 10.1093/nar/gkn772
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- Article
Small ncRNA transcriptome analysis from Aspergillus fumigatus suggests a novel mechanism for regulation of protein synthesis.
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- Nucleic Acids Research, 2008, v. 36, n. 8, p. 2677, doi. 10.1093/nar/gkn123
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- Article
DNA methylation signature in blood mirrors successful weight-loss during lifestyle interventions: the CENTRAL trial.
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- Genome Medicine, 2020, v. 12, n. 1, p. N.PAG, doi. 10.1186/s13073-020-00794-7
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- Article
Noncoding RNA Transcripts during Differentiation of Induced Pluripotent Stem Cells into Hepatocytes.
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- Stem Cells International, 2018, p. 1, doi. 10.1155/2018/5692840
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- Article
Selection Pressures on RNA Sequences and Structures.
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- Evolutionary Bioinformatics, 2019, v. 15, p. N.PAG, doi. 10.1177/1176934319871919
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- Article
Selection Pressures on RNA Sequences and Structures.
- Published in:
- Evolutionary Bioinformatics, 2019, v. 15, p. N.PAG, doi. 10.1177/1176934319871919
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- Publication type:
- Article
Selection Pressures on RNA Sequences and Structures.
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- Evolutionary Bioinformatics, 2019, p. 1, doi. 10.1177/1176934319871919
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- Article
Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome.
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- Nature Biotechnology, 2005, v. 23, n. 11, p. 1383, doi. 10.1038/nbt1144
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- Article
Mono-valent salt corrections for RNA secondary structures in the ViennaRNA package.
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- Algorithms for Molecular Biology, 2023, v. 18, n. 1, p. 1, doi. 10.1186/s13015-023-00236-0
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- Article
Relative timing information and orthology in evolutionary scenarios.
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- Algorithms for Molecular Biology, 2023, v. 18, n. 1, p. 1, doi. 10.1186/s13015-023-00240-4
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- Article
Bi-alignments with affine gaps costs.
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- Algorithms for Molecular Biology, 2022, v. 17, n. 1, p. 1, doi. 10.1186/s13015-022-00219-7
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- Publication type:
- Article
A simpler linear-time algorithm for the common refinement of rooted phylogenetic trees on a common leaf set.
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- Algorithms for Molecular Biology, 2021, v. 16, n. 1, p. 1, doi. 10.1186/s13015-021-00202-8
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- Article
Heuristic algorithms for best match graph editing.
- Published in:
- Algorithms for Molecular Biology, 2021, v. 16, n. 1, p. 1, doi. 10.1186/s13015-021-00196-3
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- Article