Works matching AU Ssemwanga, Deogratius

Results: 33

A novel post-mortem pathogen discovery program detects an outbreak of Echovirus E7: Uganda, 2022–2023.

Published in:

Frontiers in Microbiology, 2025, p. 1, doi. 10.3389/fmicb.2025.1557576

By:

Weiss, Sonja L.;
Bbosa, Nicholas;
Orf, Gregory S.;
Berg, Michael G.;
Ssemwanga, Deogratius;
Kalungi, Sam;
Balinandi, Stephen;
Mata, Maximillian;
Bosa, Henry Kyobe;
Nabirye, Stella E.;
Buule, Joshua;
Lutalo, Tom;
Havron, Angela;
Downing, Robert;
Rodgers, Mary A.;
Averhoff, Francisco;
Cloherty, Gavin A.;
Kaleebu, Pontiano

Publication type:

Article

Uncovering the viral aetiology of undiagnosed acute febrile illness in Uganda using metagenomic sequencing.

Published in:

Nature Communications, 2025, v. 16, n. 1, p. 1, doi. 10.1038/s41467-025-57696-8

By:

Ashraf, Shirin;
Jerome, Hanna;
Bugembe, Daniel Lule;
Ssemwanga, Deogratius;
Byaruhanga, Timothy;
Kayiwa, John Timothy;
Downing, Robert;
Salazar-Gonzalez, Jesus F.;
Salazar, Maria G.;
Shepherd, James G.;
Wilkie, Craig;
Davis, Chris;
Logan, Nicola;
Vattipally, Sreenu B.;
Wilkie, Gavin S.;
da Silva Filipe, Ana;
Ssekagiri, Alfred;
Namuwulya, Prossy;
Bukenya, Henry;
Kigozi, Brian K.

Publication type:

Article

Next-Generation Sequencing Reveals a High Frequency of HIV-1 Minority Variants and an Expanded Drug Resistance Profile among Individuals on First-Line ART.

Published in:

Viruses (1999-4915), 2024, v. 16, n. 9, p. 1454, doi. 10.3390/v16091454

By:

Nannyonjo, Maria;
Omooja, Jonah;
Bugembe, Daniel Lule;
Bbosa, Nicholas;
Lunkuse, Sandra;
Nabirye, Stella Esther;
Nassolo, Faridah;
Namagembe, Hamidah;
Abaasa, Andrew;
Kazibwe, Anne;
Kaleebu, Pontiano;
Ssemwanga, Deogratius

Publication type:

Article

Detection of HIV-1 Transmission Clusters from Dried Blood Spots within a Universal Test-and-Treat Trial in East Africa.

Published in:

Viruses (1999-4915), 2022, v. 14, n. 8, p. 1673, doi. 10.3390/v14081673

By:

Pujol-Hodge, Emma;
Salazar-Gonzalez, Jesus F.;
Ssemwanga, Deogratius;
Charlebois, Edwin D.;
Ayieko, James;
Grant, Heather E.;
Liegler, Teri;
Atkins, Katherine E.;
Kaleebu, Pontiano;
Kamya, Moses R.;
Petersen, Maya;
Havlir, Diane V.;
Leigh Brown, Andrew J.

Publication type:

Article

Phylogenetic Networks and Parameters Inferred from HIV Nucleotide Sequences of High-Risk and General Population Groups in Uganda: Implications for Epidemic Control.

Published in:

Viruses (1999-4915), 2021, v. 13, n. 6, p. 970, doi. 10.3390/v13060970

By:

Bbosa, Nicholas;
Ssemwanga, Deogratius;
Nsubuga, Rebecca N.;
Kiwanuka, Noah;
Bagaya, Bernard S.;
Kitayimbwa, John M.;
Ssekagiri, Alfred;
Yebra, Gonzalo;
Kaleebu, Pontiano;
Leigh-Brown, Andrew

Publication type:

Article

The Molecular Epidemiology and Transmission Dynamics of HIV Type 1 in a General Population Cohort in Uganda.

Published in:

Viruses (1999-4915), 2020, v. 12, n. 11, p. 1283, doi. 10.3390/v12111283

By:

Ssemwanga, Deogratius;
Bbosa, Nicholas;
Nsubuga, Rebecca N.;
Ssekagiri, Alfred;
Kapaata, Anne;
Nannyonjo, Maria;
Nassolo, Faridah;
Karabarinde, Alex;
Mugisha, Joseph;
Seeley, Janet;
Yebra, Gonzalo;
Leigh Brown, Andrew;
Kaleebu, Pontiano

Publication type:

Article

Phylogenetic and Demographic Characterization of Directed HIV-1 Transmission Using Deep Sequences from High-Risk and General Population Cohorts/Groups in Uganda.

Published in:

Viruses (1999-4915), 2020, v. 12, n. 3, p. 331, doi. 10.3390/v12030331

By:

Bbosa, Nicholas;
Ssemwanga, Deogratius;
Ssekagiri, Alfred;
Xi, Xiaoyue;
Mayanja, Yunia;
Bahemuka, Ubaldo;
Seeley, Janet;
Pillay, Deenan;
Abeler-Dörner, Lucie;
Golubchik, Tanya;
Fraser, Christophe;
Kaleebu, Pontiano;
Ratmann, Oliver

Publication type:

Article

Geographic and Population Distributions of Human Immunodeficiency Virus (HIV)–1 and HIV-2 Circulating Subtypes: A Systematic Literature Review and Meta-analysis (2010–2021).

Published in:

Journal of Infectious Diseases, 2023, v. 228, n. 11, p. 1583, doi. 10.1093/infdis/jiad327

By:

Williams, Alexandria;
Menon, Sonia;
Crowe, Madeleine;
Agarwal, Neha;
Biccler, Jorne;
Bbosa, Nicholas;
Ssemwanga, Deogratius;
Adungo, Ferdinard;
Moecklinghoff, Christiane;
Macartney, Malcolm;
Oriol-Mathieu, Valerie

Publication type:

Article

Employing phylogenetic tree shape statistics to resolve the underlying host population structure.

Published in:

BMC Bioinformatics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12859-021-04465-1

By:

Kayondo, Hassan W.;
Ssekagiri, Alfred;
Nabakooza, Grace;
Bbosa, Nicholas;
Ssemwanga, Deogratius;
Kaleebu, Pontiano;
Mwalili, Samuel;
Mango, John M.;
Leigh Brown, Andrew J.;
Saenz, Roberto A.;
Galiwango, Ronald;
Kitayimbwa, John M.

Publication type:

Article

Designing a course model for distance-based online bioinformatics training in Africa: The H3ABioNet experience.

Published in:

2017

By:

Gurwitz, Kim T.;
Aron, Shaun;
Panji, Sumir;
Maslamoney, Suresh;
Fernandes, Pedro L.;
Judge, David P.;
Ghouila, Amel;
Domelevo Entfellner, Jean-Baka;
Guerfali, Fatma Z.;
Saunders, Colleen;
Mansour Alzohairy, Ahmed;
Salifu, Samson P.;
Ahmed, Rehab;
Cloete, Ruben;
Kayondo, Jonathan;
Ssemwanga, Deogratius;
Mulder, Nicola;
Null, Null

Publication type:

Course Review

HIV-1 transmission networks in high risk fishing communities on the shores of Lake Victoria in Uganda: A phylogenetic and epidemiological approach.

Published in:

PLoS ONE, 2017, v. 12, n. 10, p. 1, doi. 10.1371/journal.pone.0185818

By:

Kiwuwa-Muyingo, Sylvia;
Nazziwa, Jamirah;
Ssemwanga, Deogratius;
Ilmonen, Pauliina;
Njai, Harr;
Ndembi, Nicaise;
Parry, Chris;
Kitandwe, Paul Kato;
Gershim, Asiki;
Mpendo, Juliet;
Neilsen, Leslie;
Seeley, Janet;
Seppälä, Heikki;
Lyagoba, Fred;
Kamali, Anatoli;
Kaleebu, Pontiano

Publication type:

Article

A large population sample of African HIV genomes from the 1980s reveals a reduction in subtype D over time associated with propensity for CXCR4 tropism.

Published in:

Retrovirology, 2022, v. 19, n. 1, p. 1, doi. 10.1186/s12977-022-00612-5

By:

Grant, Heather E.;
Roy, Sunando;
Williams, Rachel;
Tutill, Helena;
Ferns, Bridget;
Cane, Patricia A.;
Carswell, J. Wilson;
Ssemwanga, Deogratius;
Kaleebu, Pontiano;
Breuer, Judith;
Leigh Brown, Andrew J.

Publication type:

Article

A large population sample of African HIV genomes from the 1980s reveals a reduction in subtype D over time associated with propensity for CXCR4 tropism.

Published in:

Retrovirology, 2022, v. 19, n. 1, p. 1, doi. 10.1186/s12977-022-00612-5

By:

Grant, Heather E.;
Roy, Sunando;
Williams, Rachel;
Tutill, Helena;
Ferns, Bridget;
Cane, Patricia A.;
Carswell, J. Wilson;
Ssemwanga, Deogratius;
Kaleebu, Pontiano;
Breuer, Judith;
Leigh Brown, Andrew J.

Publication type:

Article

COVID-19 vaccine uptake and associated factors among individuals living in a peri-urban area in Uganda: A cross-sectional study.

Published in:

PLoS ONE, 2024, v. 19, n. 11, p. 1, doi. 10.1371/journal.pone.0312377

By:

Nanteza, Mary Bridget;
Nanyonjo, Gertrude;
Kyakuwa, Nasimu;
Nakanjako, Flavia;
Kalute, Hamza;
Atuhairwe, Christine;
Watera, Christine;
Ssemwanga, Deogratius

Publication type:

Article

Transmitted Antiretroviral Drug Resistance Among Drug-Naive Female Sex Workers With Recent Infection in Kampala, Uganda.

Published in:

Clinical Infectious Diseases, 2012, v. 54, n. suppl_4, p. S339, doi. 10.1093/cid/cir937

By:

Ssemwanga, Deogratius;
Ndembi, Nicaise;
Lyagoba, Frederick;
Magambo, Brian;
Kapaata, Anne;
Bukenya, Justine;
Lubega, George W.;
Bertagnolio, Silvia;
Vandepitte, Judith;
Grosskurth, Heiner;
Kaleebu, Pontiano

Publication type:

Article

HIVseqDB: a portable resource for NGS and sample metadata integration for HIV-1 drug resistance analysis.

Published in:

Bioinformatics Advances, 2024, v. 4, n. 1, p. 1, doi. 10.1093/bioadv/vbae008

By:

Ssekagiri, Alfred;
Jjingo, Daudi;
Bbosa, Nicholas;
Bugembe, Daniel L;
Kateete, David P;
Jordan, I King;
Kaleebu, Pontiano;
Ssemwanga, Deogratius

Publication type:

Article

QuasiFlow: a Nextflow pipeline for analysis of NGS-based HIV-1 drug resistance data.

Published in:

Bioinformatics Advances, 2022, v. 2, n. 1, p. 1, doi. 10.1093/bioadv/vbac089

By:

Ssekagiri, Alfred;
Jjingo, Daudi;
Lujumba, Ibra;
Bbosa, Nicholas;
Bugembe, Daniel L;
Kateete, David P;
Jordan, I King;
Kaleebu, Pontiano;
Ssemwanga, Deogratius

Publication type:

Article

Phylogeography of HIV-1 suggests that Ugandan fishing communities are a sink for, not a source of, virus from general populations.

Published in:

Scientific Reports, 2019, v. 9, n. 1, p. 1, doi. 10.1038/s41598-018-37458-x

By:

Bbosa, Nicholas;
Ssemwanga, Deogratius;
Nsubuga, Rebecca N.;
Salazar-Gonzalez, Jesus F.;
Salazar, Maria G.;
Nanyonjo, Maria;
Kuteesa, Monica;
Seeley, Janet;
Kiwanuka, Noah;
Bagaya, Bernard S.;
Yebra, Gonzalo;
Leigh-Brown, Andrew;
Kaleebu, Pontiano

Publication type:

Article

Quantifying prevalence and risk factors of HIV multiple infection in Uganda from population-based deep-sequence data.

Published in:

PLoS Pathogens, 2025, v. 21, n. 4, p. 1, doi. 10.1371/journal.ppat.1013065

By:

Martin, Michael A.;
Brizzi, Andrea;
Xi, Xiaoyue;
Galiwango, Ronald Moses;
Moyo, Sikhulile;
Ssemwanga, Deogratius;
Blenkinsop, Alexandra;
Redd, Andrew D.;
Abeler-Dörner, Lucie;
Reynolds, Steven J.;
Quinn, Thomas C.;
Kagaayi, Joseph;
Bonsall, David;
Serwadda, David;
Nakigozi, Gertrude;
Kigozi, Godfrey;
Grabowski, M. Kate;
Ratmann, Oliver

Publication type:

Article

Characterization of the Neutralizing Antibody Response in a Case of Genetically Linked HIV Superinfection.

Published in:

2018

By:

Ssemwanga, Deogratius;
Doria-Rose, Nicole A.;
Redd, Andrew D.;
Shiakolas, Andrea R.;
Longosz, Andrew F.;
Nsubuga, Longosz;
Mayanja, Billy N.;
Asiki, Gershim;
Seeley, Janet;
Kamali, Anatoli;
Ransier, Amy;
Darko, Samuel;
Walker, Michael P.;
Bruno, Daniel;
Martens, Craig;
Douek, Daniel;
Porcella, Stephen F.;
Quinn, Thomas C.;
Mascola, John R.;
Kaleebu, Pontiano

Publication type:

journal article

Identification of Anthrax as the Cause of a Cluster of Unexplained Deaths, Uganda, 2023: The Role of Metagenomic Next-Generation Sequencing and Postmortem Specimens.

Published in:

American Journal of Tropical Medicine & Hygiene, 2025, v. 112, n. 4, p. 835, doi. 10.4269/ajtmh.24-0489

By:

Bbosa, Nicholas;
Ssemwanga, Deogratius;
Weiss, Sonja L.;
Kalungi, Sam;
Mawanda, Anatoli;
Ssentudde, Richard;
Ssekyeru, Emmanuel;
Ssekagiri, Alfred;
Kiiza, Ronald;
Rwankindo, Cleophous;
Buule, Joshua;
Namagembe, Hamidah Suubi;
Nabirye, Stella;
Nassolo, Justine Priscilla;
Downing, Robert;
Lutwama, Julius;
Lutalo, Tom;
Bosa, Henry Kyobe;
Berg, Michael G.;
Rodgers, Mary A.

Publication type:

Article

Intra- and inter-subtype HIV diversity between 1994 and 2018 in southern Uganda: a longitudinal population-based study.

Published in:

Virus Evolution, 2024, v. 10, n. 1, p. 1, doi. 10.1093/ve/veae065

By:

Kim, Seungwon;
Kigozi, Godfrey;
Martin, Michael A;
Galiwango, Ronald M;
Quinn, Thomas C;
Redd, Andrew D;
Ssekubugu, Robert;
Bonsall, David;
Ssemwanga, Deogratius;
Rambaut, Andrew;
Herbeck, Joshua T;
Reynolds, Steven J;
Foley, Brian;
Abeler-Dörner, Lucie;
Fraser, Christophe;
Ratmann, Oliver;
Kagaayi, Joseph;
Laeyendecker, Oliver;
Grabowski, Mary K

Publication type:

Article

Pervasive and non-random recombination in near full-length HIV genomes from Uganda.

Published in:

Virus Evolution, 2020, v. 6, n. 1, p. 1, doi. 10.1093/ve/veaa004

By:

Grant, Heather E;
Hodcroft, Emma B;
Ssemwanga, Deogratius;
Kitayimbwa, John M;
Yebra, Gonzalo;
Gomez, Luis Roger Esquivel;
Frampton, Dan;
Gall, Astrid;
Kellam, Paul;
Oliveira, Tulio de;
Bbosa, Nicholas;
Nsubuga, Rebecca N;
Kibengo, Freddie;
Kwan, Tsz Ho;
Lycett, Samantha;
Kao, Rowland;
Robertson, David L;
Ratmann, Oliver;
Fraser, Christophe;
Pillay, Deenan

Publication type:

Article

Deciphering the Complex Distribution of Human Immunodeficiency Virus Type 1 Subtypes among Different Cohorts in Northern Tanzania.

Published in:

PLoS ONE, 2013, v. 8, n. 12, p. 1, doi. 10.1371/journal.pone.0081848

By:

Njai, Harr F.;
Ewings, Fiona M.;
Lyimo, Eric;
Foulongne, Vincent;
Ngerageza, Dhamira;
Mongi, Aika;
Ssemwanga, Deogratius;
Andreasen, Aura;
Nyombi, Balthazar;
Ao, Tony;
Michael, Denna;
Urassa, Mark;
Todd, Jim;
Zaba, Basia;
Changalucha, John;
Hayes, Richard;
Kapiga, Saidi H.

Publication type:

Article

Effect of HIV-1 Subtypes on Disease Progression in Rural Uganda: A Prospective Clinical Cohort Study.

Published in:

PLoS ONE, 2013, v. 8, n. 8, p. 1, doi. 10.1371/journal.pone.0071768

By:

Ssemwanga, Deogratius;
Nsubuga, Rebecca N.;
Mayanja, Billy N.;
Lyagoba, Frederick;
Magambo, Brian;
Yirrell, Dave;
Van der Paal, Lieve;
Grosskurth, Heiner;
Kaleebu, Pontiano

Publication type:

Article

Case Reports of Human Monkeypox Virus Infections, Uganda, 2024.

Published in:

Emerging Infectious Diseases, 2025, v. 31, n. 1, p. 144, doi. 10.3201/eid3101.241269

By:

Bbosa, Nicholas;
Nabirye, Stella E.;
Namagembe, Hamidah S.;
Kiiza, Ronald;
Ssekagiri, Alfred;
Munyagwa, Mary;
Bwambale, Arafat;
Bagonza, Stephen;
Bosa, Henry Kyobe;
Downing, Robert;
Lutwama, Julius;
Kaleebu, Pontiano;
Ssemwanga, Deogratius

Publication type:

Article

Rapid Replacement of SARS-CoV-2 Variants by Delta and Subsequent Arrival of Omicron, Uganda, 2021.

Published in:

Emerging Infectious Diseases, 2022, v. 28, n. 5, p. 1021, doi. 10.3201/eid2805.220121

By:

Bbosa, Nicholas;
Ssemwanga, Deogratius;
Namagembe, Hamidah;
Kiiza, Ronald;
Kiconco, Jocelyn;
Kayiwa, John;
Lutalo, Tom;
Lutwama, Julius;
Ssekagiri, Alfred;
Ssewanyana, Isaac;
Nabadda, Susan;
Kyobe-Bbosa, Henry;
Giandhari, Jennifer;
Pillay, Sureshnee;
Ramphal, Upasana;
Ramphal, Yajna;
Naidoo, Yeshnee;
Tshiabuila, Derek;
Tegally, Houriiyah;
San, Emmanuel J.

Publication type:

Article

Main Routes of Entry and Genomic Diversity of SARS-CoV-2, Uganda.

Published in:

2020

By:

Bugembe, Daniel Lule;
Kayiwa, John;
Phan, My V. T.;
Tushabe, Phionah;
Balinandi, Stephen;
Dhaala, Beatrice;
Lexow, Jonas;
Mwebesa, Henry;
Aceng, Jane;
Kyobe, Henry;
Ssemwanga, Deogratius;
Lutwama, Julius;
Kaleebu, Pontiano;
Cotten, Matthew;
Tushabe, Phiona

Publication type:

journal article

HIV drug resistance among adults initiating antiretroviral therapy in Uganda.

Published in:

2021

By:

Watera, Christine;
Ssemwanga, Deogratius;
Namayanja, Grace;
Asio, Juliet;
Lutalo, Tom;
Namale, Alice;
Sanyu, Grace;
Ssewanyana, Isaac;
Gonzalez-Salazar, Jesus Fidel;
Nazziwa, Jamirah;
Nanyonjo, Maria;
Raizes, Elliot;
Kabuga, Usher;
Mwangi, Christina;
Kirungi, Wilford;
Musinguzi, Joshua;
Mugagga, Kaggwa;
Mbidde, Edward Katongole;
Kaleebu, Pontiano

Publication type:

journal article

Prevalence of viral load suppression, predictors of virological failure and patterns of HIV drug resistance after 12 and 48 months on first-line antiretroviral therapy: a national cross-sectional survey in Uganda.

Published in:

2020

By:

Ssemwanga, Deogratius;
Asio, Juliet;
Watera, Christine;
Nannyonjo, Maria;
Nassolo, Faridah;
Lunkuse, Sandra;
Salazar-Gonzalez, Jesus F;
Salazar, Maria G;
Sanyu, Grace;
Lutalo, Tom;
Kabuga, Usher;
Ssewanyana, Isaac;
Namatovu, Faridah;
Namayanja, Grace;
Namale, Alice;
Raizes, Elliot;
Kaggwa, Mugagga;
Namuwenge, Norah;
Kirungi, Wilford;
Katongole-Mbidde, Edward

Publication type:

journal article

Rates of HIV-1 virological suppression and patterns of acquired drug resistance among fisherfolk on first-line antiretroviral therapy in Uganda.

Published in:

2019

By:

Omooja, Jonah;
Nannyonjo, Maria;
Sanyu, Grace;
Nabirye, Stella E;
Nassolo, Faridah;
Lunkuse, Sandra;
Kapaata, Anne;
Segujja, Farouk;
Kateete, David Patrick;
Ssebaggala, Eric;
Bbosa, Nicholas;
Aling, Emmanuel;
Nsubuga, Rebecca N;
Kaleebu, Pontiano;
Ssemwanga, Deogratius

Publication type:

journal article

Update on HIV-1 Acquired and Transmitted Drug Resistance in Africa.

Published in:

AIDS Reviews, 2015, v. 17, n. 1, p. 3

By:

Ssemwanga, Deogratius;
Lihana, Raphael W.;
Ugoji, Chinenye;
Abimiku, Alash'le;
Nkengasong, John;
Dakum, Patrick;
Ndembi, Nicaise

Publication type:

Article

HIV-1 drug resistance genotyping success rates and correlates of Dried-blood spots and plasma specimen genotyping failure in a resource-limited setting.

Published in:

2022

By:

Omooja, Jonah;
Bbosa, Nicholas;
Lule, Dan Bugembe;
Nannyonjo, Maria;
Lunkuse, Sandra;
Nassolo, Faridah;
Nabirye, Stella Esther;
Suubi, Hamidah Namagembe;
Kaleebu, Pontiano;
Ssemwanga, Deogratius

Publication type:

journal article