Works by Srinivasan, Narayanaswamy

Results: 101

Synthesis and spectral studies of Ni(II) heterocyclic dithiocarbamates with S<sub>2</sub>PN chromophore: X-ray crystal structures of bis(1,2,3,4-tetrahydroquinolinecarbodithioato- S,S')nickel(II) and 1,2,3,4-tetrahydroquinolinecarbodithioato- S,S')(thiocyanato-N)(triphenylphosphine)nickel(II)

Published in:

Journal of Sulfur Chemistry, 2011, v. 32, n. 6, p. 583, doi. 10.1080/17415993.2011.628991

By:

Valarmathi, Panneerselvam;
Srinivasan, Narayanaswamy;
Thirumaran, Subbiah

Publication type:

Article

Cis- trans peptide variations in structurally similar proteins.

Published in:

Amino Acids, 2012, v. 43, n. 3, p. 1369, doi. 10.1007/s00726-011-1211-9

By:

Joseph, Agnel;
Srinivasan, Narayanaswamy;
Brevern, Alexandre

Publication type:

Article

Molecular and Structural Basis of Drift in the Functions of Closely-Related Homologous Enzyme Domains: Implications for Function Annotation Based on Homology Searches and Structural Genomics.

Published in:

In Silico Biology, 2009, v. 9, n. 1/2, p. 41, doi. 10.3233/ISB-2009-0379

By:

Roy, Ambrish;
Srinivasan, Narayanaswamy;
Gowri, Venkatraman S.

Publication type:

Article

A Data Integration Approach to Predict Host-Pathogen Protein-Protein Interactions: Application to Recognize Protein Interactions between Human and a Malarial Parasite.

Published in:

In Silico Biology, 2008, v. 8, n. 3/4, p. 235, doi. 10.3233/isb-00355

By:

Krishnadev, Oruganty;
Srinivasan, Narayanaswamy

Publication type:

Article

A New Domain Family in the Superfamily of Alkaline Phosphatases.

Published in:

In Silico Biology, 2005, v. 5, n. 4, p. 379, doi. 10.3233/isb-00194

By:

Bhadra, Rana;
Srinivasan, Narayanaswamy;
Pandit, Shashi B.

Publication type:

Article

Recognition of Remotely Related Structural Homologues Using Sequence Profiles of Aligned Homologous Protein Structures.

Published in:

In Silico Biology, 2004, v. 4, n. 4, p. 445, doi. 10.3233/isb-00147

By:

Namboori, Seema;
Srinivasan, Narayanaswamy;
Pandit, Shashi B.

Publication type:

Article

Chandrasekharan Ramakrishnan (1939–2019): The student behind the Ramachandran map.

Published in:

Protein Science: A Publication of the Protein Society, 2019, v. 28, n. 11, p. 1920, doi. 10.1002/pro.3723

By:

Srinivasan, Narayanaswamy

Publication type:

Article

Structural and molecular basis of interaction of HCV non-structural protein 5A with human casein kinase 1α and PKR.

Published in:

BMC Structural Biology, 2012, v. 12, n. 1, p. 28, doi. 10.1186/1472-6807-12-28

By:

Sudha, Govindarajan;
Yamunadevi, Subburaj;
Tyagi, Nidhi;
Das, Saumitra;
Srinivasan, Narayanaswamy

Publication type:

Article

Comparison of tertiary structures of proteins in protein-protein complexes with unbound forms suggests prevalence of allostery in signalling proteins.

Published in:

BMC Structural Biology, 2012, v. 12, n. 1, p. 6, doi. 10.1186/1472-6807-12-6

By:

Swapna, Lakshmipuram S.;
Mahajan, Swapnil;
de Brevern, Alexandre G.;
Srinivasan, Narayanaswamy

Publication type:

Article

Prediction of protein-protein interactions in dengue virus coat proteins guided by low resolution cryoEM structures.

Published in:

BMC Structural Biology, 2010, v. 10, p. 17, doi. 10.1186/1472-6807-10-17

By:

Gadkari, Rupali A.;
Srinivasan, Narayanaswamy

Publication type:

Article

CUSP: an algorithm to distinguish structurally conserved and unconserved regions in protein domain alignments and its application in the study of large length variations.

Published in:

BMC Structural Biology, 2008, v. 8, p. 1, doi. 10.1186/1472-6807-8-28

By:

Sandhya, Sankaran;
Pankaj, Barah;
Govind, Madabosse Kande;
Offmann, Bernard;
Srinivasan, Narayanaswamy;
Sowdhamini, Ramanathan

Publication type:

Article

Recognition of sites of functional specialisation in all known eukaryotic protein kinase families.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 2, p. 1, doi. 10.1371/journal.pcbi.1005975

By:

Kalaivani, Raju;
Reema, Raju;
Srinivasan, Narayanaswamy

Publication type:

Article

Same but not alike: Structure, flexibility and energetics of domains in multi-domain proteins are influenced by the presence of other domains.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 2, p. 1, doi. 10.1371/journal.pcbi.1006008

By:

Vishwanath, Sneha;
de Brevern, Alexandre G.;
Srinivasan, Narayanaswamy

Publication type:

Article

NOD: a web server to predict New use of Old Drugs to facilitate drug repurposing.

Published in:

Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-92903-8

By:

Narwani, Tarun Jairaj;
Srinivasan, Narayanaswamy;
Chakraborti, Sohini

Publication type:

Article

Master Blaster: an approach to sensitive identification of remotely related proteins.

Published in:

Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-87833-4

By:

Janaki, Chintalapati;
Gowri, Venkatraman S.;
Srinivasan, Narayanaswamy

Publication type:

Article

Signatures of conserved and unique molecular features in Afrotheria.

Published in:

Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-020-79559-6

By:

Yazhini, Arangasamy;
Srinivasan, Narayanaswamy;
Sandhya, Sankaran

Publication type:

Article

Publisher Correction: A genome-wide structure-based survey of nucleotide binding proteins in M. tuberculosis.

Published in:

2020

By:

Bhagavat, Raghu;
Kim, Heung-Bok;
Kim, Chang-Yub;
Terwilliger, Thomas C.;
Mehta, Dolly;
Srinivasan, Narayanaswamy;
Chandra, Nagasuma

Publication type:

Correction Notice

Structures of distantly related interacting protein homologs are less divergent than non‐interacting homologs.

Published in:

FEBS Open Bio, 2022, v. 12, n. 12, p. 2147, doi. 10.1002/2211-5463.13492

By:

Naveenkumar, Nagarajan;
Prabantu, Vasam Manjveekar;
Vishwanath, Sneha;
Sowdhamini, Ramanathan;
Srinivasan, Narayanaswamy

Publication type:

Article

The origins of the evolutionary signal used to predict protein-protein interactions.

Published in:

BMC Evolutionary Biology, 2012, v. 12, n. 1, p. 238, doi. 10.1186/1471-2148-12-238

By:

Swapna, Lakshmipuram S.;
Srinivasan, Narayanaswamy;
Robertson, David L.;
Lovell, Simon C.

Publication type:

Article

Specialized structural and functional roles of residues selectively conserved in subfamilies of the pleckstrin homology domain family.

Published in:

FEBS Open Bio, 2019, v. 9, n. 11, p. 1848, doi. 10.1002/2211-5463.12725

By:

Naveenkumar, Nagarajan;
Sowdhamini, Ramanathan;
Srinivasan, Narayanaswamy

Publication type:

Article

From workstations to workbenches: Towards predicting physicochemically viable protein-protein interactions across a host and a pathogen.

Published in:

IUBMB Life, 2014, v. 66, n. 11, p. 759, doi. 10.1002/iub.1331

By:

Ramakrishnan, Gayatri;
Chandra, Nagasuma R.;
Srinivasan, Narayanaswamy

Publication type:

Article

Molecular and Structural Basis of Cross-Reactivity in M. tuberculosis Toxin–Antitoxin Systems.

Published in:

Toxins, 2020, v. 12, n. 8, p. 481, doi. 10.3390/toxins12080481

By:

Tandon, Himani;
Melarkode Vattekatte, Akhila;
Srinivasan, Narayanaswamy;
Sandhya, Sankaran

Publication type:

Article

Discrete analyses of protein dynamics.

Published in:

Journal of Biomolecular Structure & Dynamics, 2020, v. 38, n. 10, p. 2988, doi. 10.1080/07391102.2019.1650112

By:

Narwani, Tarun Jairaj;
Craveur, Pierrick;
Shinada, Nicolas K.;
Floch, Aline;
Santuz, Hubert;
Vattekatte, Akhila Melarkode;
Srinivasan, Narayanaswamy;
Rebehmed, Joseph;
Gelly, Jean-Christophe;
Etchebest, Catherine;
de Brevern, Alexandre G.

Publication type:

Article

Mutations in SARS-CoV-2 viral RNA identified in Eastern India: Possible implications for the ongoing outbreak in India and impact on viral structure and host susceptibility.

Published in:

Journal of Biosciences, 2020, v. 45, n. 1, p. 1, doi. 10.1007/s12038-020-00046-1

By:

Maitra, Arindam;
Sarkar, Mamta Chawla;
Raheja, Harsha;
Biswas, Nidhan K;
Chakraborti, Sohini;
Singh, Animesh Kumar;
Ghosh, Shekhar;
Sarkar, Sumanta;
Patra, Subrata;
Mondal, Rajiv Kumar;
Ghosh, Trinath;
Chatterjee, Ananya;
Banu, Hasina;
Majumdar, Agniva;
Chinnaswamy, Sreedhar;
Srinivasan, Narayanaswamy;
Dutta, Shanta;
Das, Saumitra

Publication type:

Article

Trans effect of triphenylphosphine on Ni–S bonds in solid state and DFT/B3LYP optimized structure: Synthesis, spectral and structural studies on (bis(2-ethylhexyl)dithiocarbamato-S,S′)(thiocyanato- N )(triphenylphosphine)nickel(II).

Published in:

Phosphorus, Sulfur & Silicon & the Related Elements, 2016, v. 191, n. 8, p. 1183, doi. 10.1080/10426507.2016.1160239

By:

Valarmathi, Panneerselvam;
Srinivasan, Narayanaswamy;
Thirumaran, Subbiah;
Saminathan, Kolandaivelu

Publication type:

Article

Small molecule inhibitors of HCV replication from Pomegranate.

Published in:

Scientific Reports, 2014, p. 1, doi. 10.1038/srep05411

By:

Reddy, B. Uma;
Mullick, Ranajoy;
Kumar, Anuj;
Sudha, Govindarajan;
Srinivasan, Narayanaswamy;
Das, Saumitra

Publication type:

Article

Interface residues of transient protein-protein complexes have extensive intra-protein interactions apart from inter-protein interactions.

Published in:

Biology Direct, 2019, v. 14, n. 1, p. N.PAG, doi. 10.1186/s13062-019-0232-2

By:

Jayashree, Srinivasan;
Murugavel, Pavalam;
Sowdhamini, Ramanathan;
Srinivasan, Narayanaswamy

Publication type:

Article

Use of designed sequences in protein structure recognition.

Published in:

Biology Direct, 2018, v. 13, n. 1, p. 1, doi. 10.1186/s13062-018-0209-6

By:

Kumar, Gayatri;
Mudgal, Richa;
Srinivasan, Narayanaswamy;
Sandhya, Sankaran

Publication type:

Article

Recognition of a structural domain (RWDBD) in Gcn1 proteins that interacts with the RWD domain containing proteins.

Published in:

Biology Direct, 2017, v. 12, p. 1, doi. 10.1186/s13062-017-0184-3

By:

Rakesh, Ramachandran;
Krishnan, Rangachari;
Sattlegger, Evelyn;
Srinivasan, Narayanaswamy

Publication type:

Article

Proteomics analysis of carbon-starved Mycobacterium smegmatis: induction of Dps-like protein.

Published in:

Protein Engineering, 2002, v. 15, n. 6, p. 503, doi. 10.1093/protein/15.6.503

By:

Gupta, Surbhi;
Pandit, Shashi Bhushan;
Srinivasan, Narayanaswamy;
Chatterji, Dipankar

Publication type:

Article

Knowledge-based prediction of protein backbone conformation using a structural alphabet.

Published in:

PLoS ONE, 2017, v. 12, n. 11, p. 1, doi. 10.1371/journal.pone.0186215

By:

Vetrivel, Iyanar;
Mahajan, Swapnil;
Tyagi, Manoj;
Hoffmann, Lionel;
Sanejouand, Yves-Henri;
Srinivasan, Narayanaswamy;
De Brevern, Alexandre G.;
Cadet, Frédéric;
Offmann, Bernard

Publication type:

Article

Structural and mechanistic insights into human splicing factor SF3b complex derived using an integrated approach guided by the cryo-EM density maps.

Published in:

RNA Biology, 2016, v. 13, n. 10, p. 1025, doi. 10.1080/15476286.2016.1218590

By:

Rakesh, Ramachandran;
Joseph, Agnel Praveen;
Bhaskara, Ramachandra M.;
Srinivasan, Narayanaswamy

Publication type:

Article

Re-analysis of cryoEM data on HCV IRES bound to 40S subunit of human ribosome integrated with recent structural information suggests new contact regions between ribosomal proteins and HCV RNA.

Published in:

RNA Biology, 2014, v. 11, n. 7, p. 1, doi. 10.4161/rna.29545

By:

Praveen Joseph, Agnel;
Bhat, Prasanna;
Das, Saumitra;
Srinivasan, Narayanaswamy

Publication type:

Article

' All That Glitters Is Not Gold ': High-Resolution Crystal Structures of Ligand-Protein Complexes Need Not Always Represent Confident Binding Poses.

Published in:

International Journal of Molecular Sciences, 2021, v. 22, n. 13, p. 6830, doi. 10.3390/ijms22136830

By:

Chakraborti, Sohini;
Hatti, Kaushik;
Srinivasan, Narayanaswamy

Publication type:

Article

CLAP: A web-server for automatic classification of proteins with special reference to multi-domain proteins.

Published in:

BMC Bioinformatics, 2014, v. 15, n. 1, p. 1, doi. 10.1186/1471-2105-15-343

By:

Gnanavel, Mutharasu;
Mehrotra, Prachi;
Rakshambikai, Ramaswamy;
Martin, Juliette;
Srinivasan, Narayanaswamy;
Bhaskara, Ramachandra M.

Publication type:

Article

AlignHUSH: Alignment of HMMs using structure and hydrophobicity information.

Published in:

BMC Bioinformatics, 2011, v. 12, n. 1, p. 275, doi. 10.1186/1471-2105-12-275

By:

Krishnadev, Oruganty;
Srinivasan, Narayanaswamy

Publication type:

Article

Scrotal calcinosis: a rare entity.

Published in:

ANZ Journal of Surgery, 2011, v. 81, n. 3, p. 203, doi. 10.1111/j.1445-2197.2010.05661.x

By:

Bolbandi, Ashok K.;
Narayanaswamy, Srinivasan;
Krishnappa, Pramod

Publication type:

Article

Mycobacterium tuberculosis Rv0366c-Rv0367c encodes a non-canonical PezAT-like toxin-antitoxin pair.

Published in:

Scientific Reports, 2019, v. 9, n. 1, p. 1, doi. 10.1038/s41598-018-37473-y

By:

Tandon, Himani;
Sharma, Arun;
Sandhya, Sankaran;
Srinivasan, Narayanaswamy;
Singh, Ramandeep

Publication type:

Article

Identification, functional characterization, assembly and structure of ToxIN type III toxin–antitoxin complex from E. coli.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 3, p. 1687, doi. 10.1093/nar/gkab1264

By:

Manikandan, Parthasarathy;
Sandhya, Sankaran;
Nadig, Kavyashree;
Paul, Souradip;
Srinivasan, Narayanaswamy;
Rothweiler, Ulli;
Singh, Mahavir

Publication type:

Article

The beta hairpin structure within ribosomal protein S5 mediates interplay between domains II and IV and regulates HCV IRES function.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 5, p. 2888, doi. 10.1093/nar/gkv110

By:

Bhat, Prasanna;
Shwetha, Shivaprasad;
Khandige Sharma, Divya;
Joseph, Agnel Praveen;
Srinivasan, Narayanaswamy;
Das, Saumitra

Publication type:

Article

NrichD database: sequence databases enriched with computationally designed protein-like sequences aid in remote homology detection.

Published in:

Nucleic Acids Research, 2015, v. 43, n. D1, p. D300, doi. 10.1093/nar/gku888

By:

Mudgal, Richa;
Sandhya, Sankaran;
Kumar, Gayatri;
Sowdhamini, Ramanathan;
Chandra, Nagasuma R.;
Srinivasan, Narayanaswamy

Publication type:

Article

iPBA: a tool for protein structure comparison using sequence alignment strategies.

Published in:

Nucleic Acids Research, 2011, v. 39, n. suppl_2, p. W18, doi. 10.1093/nar/gkr333

By:

Gelly, Jean-Christophe;
Joseph, Agnel Praveen;
Srinivasan, Narayanaswamy;
de Brevern, Alexandre G.

Publication type:

Article

DSDBASE 2.0: updated version of DiSulphide dataBASE, a database on disulphide bonds in proteins.

Published in:

Database: The Journal of Biological Databases & Curation, 2022, v. 2022, p. 1, doi. 10.1093/database/baac005

By:

Kalmankar, Neha V;
Pavalam, Murugavel;
Indrakumar, Sowmya;
Srinivasan, Narayanaswamy;
Sowdhamini, Ramanathan

Publication type:

Article

SInCRe--structural interactome computational resource for Mycobacterium tuberculosis.

Published in:

Database: The Journal of Biological Databases & Curation, 2015, v. 2015, p. 1, doi. 10.1093/database/bav060

By:

Metri, Rahul;
Hariharaputran, Sridhar;
Ramakrishnan, Gayatri;
Anand, Praveen;
Raghavender, Upadhyayula S.;
Ochoa-Montaño, Bernardo;
Higueruelo, Alicia P.;
Sowdhamini, Ramanathan;
Chandra, Nagasuma R.;
Blundell, Tom L.;
Srinivasan, Narayanaswamy

Publication type:

Article

Creating a specialist protein resource network: a meeting report for the protein bioinformatics and community resources retreat.

Published in:

2015

By:

Babbitt, Patricia C.;
Bagos, Pantelis G.;
Bairoch, Amos;
Bateman, Alex;
Chatonnet, Arnaud;
Jinan Chen, Mark;
Craik, David J.;
Finn, Robert D.;
Gloriam, David;
Haft, Daniel H.;
Henrissat, Bernard;
Holliday, Gemma L.;
Isberg, Vignir;
Kaas, Quentin;
Landsman, David;
Lenfant, Nicolas;
Manning, Gerard;
Nozomi Nagano;
Srinivasan, Narayanaswamy;
O'Donovan, Claire

Publication type:

Proceeding

Do SA: Database of Structural Alignments.

Published in:

Database: The Journal of Biological Databases & Curation, 2013, v. 2013, p. 1, doi. 10.1093/database/bat048

By:

Mahajan, Swapnil;
Agarwal, Garima;
Iftekhar, Mohammed;
Offmann, Bernard;
de Brevern, Alexandre G.;
Srinivasan, Narayanaswamy

Publication type:

Article

iPBAvizu: a PyMOL plugin for an efficient 3D protein structure superimposition approach.

Published in:

Source Code for Biology & Medicine, 2019, v. 14, n. 1, p. N.PAG, doi. 10.1186/s13029-019-0075-3

By:

Faure, Guilhem;
Joseph, Agnel Praveen;
Craveur, Pierrick;
Narwani, Tarun J.;
Srinivasan, Narayanaswamy;
Gelly, Jean-Christophe;
Rebehmed, Joseph;
de Brevern, Alexandre G.

Publication type:

Article

Exploring anti-malarial potential of FDA approved drugs: an in silico approach.

Published in:

Malaria Journal, 2017, v. 16, p. 1, doi. 10.1186/s12936-017-1937-2

By:

Ramakrishnan, Gayatri;
Chandra, Nagasuma;
Srinivasan, Narayanaswamy

Publication type:

Article

The <i>Escherichia coli</i> Phosphotyrosine Proteome Relates to Core Pathways and Virulence.

Published in:

PLoS Pathogens, 2013, v. 9, n. 6, p. 1, doi. 10.1371/journal.ppat.1003403

By:

Hansen, Anne-Marie;
Chaerkady, Raghothama;
Sharma, Jyoti;
Díaz-Mejía, J. Javier;
Tyagi, Nidhi;
Renuse, Santosh;
Jacob, Harrys K. C.;
Pinto, Sneha M.;
Sahasrabuddhe, Nandini A.;
Kim, Min-Sik;
Delanghe, Bernard;
Srinivasan, Narayanaswamy;
Emili, Andrew;
Kaper, James B.;
Pandey, Akhilesh

Publication type:

Article

Seeing but not believing: the structure of glycerol dehydrogenase initially assumed to be the structure of a survival protein from Salmonella typhimurium.

Published in:

Acta Crystallographica: Section D, Structural Biology, 2017, v. 73, n. 7, p. 609, doi. 10.1107/S2059798317007677

By:

Hatti, Kaushik;
Mathiharan, Yamuna Kalyani;
Srinivasan, Narayanaswamy;
Murthy, Mathur R. N.

Publication type:

Article