Works matching AU Srinivasan, Narayanaswamy

Results: 101

Cis- trans peptide variations in structurally similar proteins.

Published in:

Amino Acids, 2012, v. 43, n. 3, p. 1369, doi. 10.1007/s00726-011-1211-9

By:

Joseph, Agnel;
Srinivasan, Narayanaswamy;
Brevern, Alexandre

Publication type:

Article

Scrotal calcinosis: a rare entity.

Published in:

ANZ Journal of Surgery, 2011, v. 81, n. 3, p. 203, doi. 10.1111/j.1445-2197.2010.05661.x

By:

Bolbandi, Ashok K.;
Narayanaswamy, Srinivasan;
Krishnappa, Pramod

Publication type:

Article

Molecular and Structural Basis of Drift in the Functions of Closely-Related Homologous Enzyme Domains: Implications for Function Annotation Based on Homology Searches and Structural Genomics.

Published in:

In Silico Biology, 2009, v. 9, n. 1/2, p. 41, doi. 10.3233/ISB-2009-0379

By:

Roy, Ambrish;
Srinivasan, Narayanaswamy;
Gowri, Venkatraman S.

Publication type:

Article

A Data Integration Approach to Predict Host-Pathogen Protein-Protein Interactions: Application to Recognize Protein Interactions between Human and a Malarial Parasite.

Published in:

In Silico Biology, 2008, v. 8, n. 3/4, p. 235, doi. 10.3233/isb-00355

By:

Krishnadev, Oruganty;
Srinivasan, Narayanaswamy

Publication type:

Article

A New Domain Family in the Superfamily of Alkaline Phosphatases.

Published in:

In Silico Biology, 2005, v. 5, n. 4, p. 379, doi. 10.3233/isb-00194

By:

Bhadra, Rana;
Srinivasan, Narayanaswamy;
Pandit, Shashi B.

Publication type:

Article

Recognition of Remotely Related Structural Homologues Using Sequence Profiles of Aligned Homologous Protein Structures.

Published in:

In Silico Biology, 2004, v. 4, n. 4, p. 445, doi. 10.3233/isb-00147

By:

Namboori, Seema;
Srinivasan, Narayanaswamy;
Pandit, Shashi B.

Publication type:

Article

Synthesis and spectral studies on N, N, N′, N′-tetramethylethylenediamine adducts of M(II) heterocyclic dithiocarbamates (M=zinc, cadmium): single crystal X-ray structure analysis of bis(1,2,3,4-tetrahydroquinolinecarbodithioato- S, S′)( N, N, N′, N′-tetramethylethylenediamine) cadmium(II)

Published in:

Main Group Metal Chemistry, 2012, v. 35, n. 1/2, p. 53, doi. 10.1515/mgmc-2012-0906

By:

Srinivasan, Narayanaswamy;
Thirumaran, Subbiah;
Ciattini, Samuele

Publication type:

Article

Functional diversity of human protein kinase splice variants markssignificant expansion of human kinome.

Published in:

BMC Genomics, 2009, v. 10, p. 622, doi. 10.1186/1471-2164-10-622

By:

Anamika, Krishanpal;
Garnier, Nicolas;
Srinivasan, Narayanaswamy

Publication type:

Article

The <i>Escherichia coli</i> Phosphotyrosine Proteome Relates to Core Pathways and Virulence.

Published in:

PLoS Pathogens, 2013, v. 9, n. 6, p. 1, doi. 10.1371/journal.ppat.1003403

By:

Hansen, Anne-Marie;
Chaerkady, Raghothama;
Sharma, Jyoti;
Díaz-Mejía, J. Javier;
Tyagi, Nidhi;
Renuse, Santosh;
Jacob, Harrys K. C.;
Pinto, Sneha M.;
Sahasrabuddhe, Nandini A.;
Kim, Min-Sik;
Delanghe, Bernard;
Srinivasan, Narayanaswamy;
Emili, Andrew;
Kaper, James B.;
Pandey, Akhilesh

Publication type:

Article

Seeing but not believing: the structure of glycerol dehydrogenase initially assumed to be the structure of a survival protein from Salmonella typhimurium.

Published in:

Acta Crystallographica: Section D, Structural Biology, 2017, v. 73, n. 7, p. 609, doi. 10.1107/S2059798317007677

By:

Hatti, Kaushik;
Mathiharan, Yamuna Kalyani;
Srinivasan, Narayanaswamy;
Murthy, Mathur R. N.

Publication type:

Article

Determination of crystal structures of proteins of unknown identity using a marathon molecular replacement procedure: structure of Stenotrophomonas maltophilia phosphate-binding protein.

Published in:

Acta Crystallographica: Section D, Structural Biology, 2016, v. 72, n. 10, p. 1081, doi. 10.1107/S2059798316012419

By:

Hatti, Kaushik;
Gulati, Ashutosh;
Srinivasan, Narayanaswamy;
Murthy, M. R. N.

Publication type:

Article

NOD: a web server to predict New use of Old Drugs to facilitate drug repurposing.

Published in:

Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-92903-8

By:

Narwani, Tarun Jairaj;
Srinivasan, Narayanaswamy;
Chakraborti, Sohini

Publication type:

Article

From workstations to workbenches: Towards predicting physicochemically viable protein-protein interactions across a host and a pathogen.

Published in:

IUBMB Life, 2014, v. 66, n. 11, p. 759, doi. 10.1002/iub.1331

By:

Ramakrishnan, Gayatri;
Chandra, Nagasuma R.;
Srinivasan, Narayanaswamy

Publication type:

Article

Molecular and Structural Basis of Cross-Reactivity in M. tuberculosis Toxin–Antitoxin Systems.

Published in:

Toxins, 2020, v. 12, n. 8, p. 481, doi. 10.3390/toxins12080481

By:

Tandon, Himani;
Melarkode Vattekatte, Akhila;
Srinivasan, Narayanaswamy;
Sandhya, Sankaran

Publication type:

Article

Structure-Based Phylogenetic Analysis of the Lipocalin Superfamily.

Published in:

PLoS ONE, 2015, v. 10, n. 8, p. 1, doi. 10.1371/journal.pone.0135507

By:

Lakshmi, Balasubramanian;
Mishra, Madhulika;
Srinivasan, Narayanaswamy;
Archunan, Govindaraju

Publication type:

Article

Hybrid and Rogue Kinases Encoded in the Genomes of Model Eukaryotes.

Published in:

PLoS ONE, 2014, v. 9, n. 9, p. 1, doi. 10.1371/journal.pone.0107956

By:

Rakshambikai, Ramaswamy;
Gnanavel, Mutharasu;
Srinivasan, Narayanaswamy

Publication type:

Article

Structural Insights into <i>Saccharomyces cerevisiae</i> Msh4–Msh5 Complex Function Using Homology Modeling.

Published in:

PLoS ONE, 2013, v. 8, n. 11, p. 1, doi. 10.1371/journal.pone.0078753

By:

Rakshambikai, Ramaswamy;
Srinivasan, Narayanaswamy;
Nishant, Koodali Thazath

Publication type:

Article

Structural Integrity of the Greek Key Motif in βγ-Crystallins Is Vital for Central Eye Lens Transparency.

Published in:

PLoS ONE, 2013, v. 8, n. 8, p. 1, doi. 10.1371/journal.pone.0070336

By:

Vendra, Venkata Pulla Rao;
Agarwal, Garima;
Chandani, Sushil;
Talla, Venu;
Srinivasan, Narayanaswamy;
Balasubramanian, Dorairajan

Publication type:

Article

Improved Detection of Remote Homologues Using Cascade PSI-BLAST: Influence of Neighbouring Protein Families on Sequence Coverage.

Published in:

PLoS ONE, 2013, v. 8, n. 2, p. 1, doi. 10.1371/journal.pone.0056449

By:

Kaushik, Swati;
Mutt, Eshita;
Chellappan, Ajithavalli;
Sankaran, Sandhya;
Srinivasan, Narayanaswamy;
Sowdhamini, Ramanathan

Publication type:

Article

Achieving High Accuracy Prediction of Minimotifs.

Published in:

PLoS ONE, 2012, v. 7, n. 9, p. 1, doi. 10.1371/journal.pone.0045589

By:

Tian Mi;
Rajasekaran, Sanguthevar;
Merlin, Jerlin Camilus;
Gryk, Michael;
Schiller, Martin R.;
Srinivasan, Narayanaswamy

Publication type:

Article

Stapled BH3 Peptides against MCL-1: Mechanism and Design Using Atomistic Simulations.

Published in:

PLoS ONE, 2012, v. 7, n. 8, p. 1, doi. 10.1371/journal.pone.0043985

By:

Joseph, Thomas L.;
Lane, David P.;
Verma, Chandra S.;
Srinivasan, Narayanaswamy

Publication type:

Article

Identifying the Hotspots on the Top Faces of WD40-Repeat Proteins from Their Primary Sequences by β-Bulges and DHSW Tetrads.

Published in:

PLoS ONE, 2012, v. 7, n. 8, p. 1, doi. 10.1371/journal.pone.0043005

By:

Xian-Hui Wu;
Yang Wang;
Zhu Zhuo;
Fan Jiang;
Yun-Dong Wu;
Srinivasan, Narayanaswamy

Publication type:

Article

Local Structural Differences in Homologous Proteins: Specificities in Different SCOP Classes.

Published in:

PLoS ONE, 2012, v. 7, n. 6, p. 1, doi. 10.1371/journal.pone.0038805

By:

Joseph, Agnel Praveen;
Valadié, Hé lène;
Srinivasan, Narayanaswamy;
Brevern, Alexandre G.

Publication type:

Article

Extent of Structural Asymmetry in Homodimeric Proteins: Prevalence and Relevance.

Published in:

PLoS ONE, 2012, v. 7, n. 5, p. 1, doi. 10.1371/journal.pone.0036688

By:

Swapna, Lakshmipuram Seshadri;
Srikeerthana, Kuchi;
Srinivasan, Narayanaswamy

Publication type:

Article

Protein-Protein Interactions in Clathrin Vesicular Assembly: Radial Distribution of Evolutionary Constraints in Interfaces.

Published in:

PLoS ONE, 2012, v. 7, n. 2, p. 1, doi. 10.1371/journal.pone.0031445

By:

Gadkari, Rupali A.;
Srinivasan, Narayanaswamy

Publication type:

Article

Pleiotropic Roles of a Ribosomal Protein in Dictyostelium discoideum.

Published in:

PLoS ONE, 2012, v. 7, n. 2, p. 1, doi. 10.1371/journal.pone.0030644

By:

Amarnath, Smita;
Kawli, Trupti;
Mohanty, Smita;
Srinivasan, Narayanaswamy;
Nanjundiah, Vidyanand

Publication type:

Article

Identification of Local Conformational Similarity in Structurally Variable Regions of Homologous Proteins Using Protein Blocks.

Published in:

PLoS ONE, 2011, v. 6, n. 3, p. 1, doi. 10.1371/journal.pone.0017826

By:

Agarwal, Garima;
Mahajan, Swapnil;
Srinivasan, Narayanaswamy;
de Brevern, Alexandre G.

Publication type:

Article

Classification of Protein Kinases on the Basis of Both Kinase and Non-Kinase Regions.

Published in:

PLoS ONE, 2010, v. 5, n. 9, p. 1, doi. 10.1371/journal.pone.0012460

By:

Martin, Juliette;
Anamika, Krishanpal;
Srinivasan, Narayanaswamy

Publication type:

Article

A Framework for Classification of Prokaryotic Protein Kinases.

Published in:

PLoS ONE, 2010, v. 5, n. 5, p. 1, doi. 10.1371/journal.pone.0010608

By:

Tyagi, Nidhi;
Anamika, Krishanpal;
Srinivasan, Narayanaswamy

Publication type:

Article

Structure-Based Phylogeny as a Diagnostic for Functional Characterization of Proteins with a Cupin Fold.

Published in:

PLoS ONE, 2009, v. 4, n. 5, p. 1, doi. 10.1371/journal.pone.0005736

By:

Agarwal, Garima;
Rajavel, Malligarjunan;
Gopal, Balasubramanian;
Srinivasan, Narayanaswamy

Publication type:

Article

Length Variations amongst Protein Domain Superfamilies and Consequences on Structure and Function.

Published in:

PLoS ONE, 2009, v. 4, n. 3, p. 1, doi. 10.1371/journal.pone.0004981

By:

Sandhya, Sankaran;
Rani, Saane Sudha;
Pankaj, Barah;
Govind, Madabosse Kande;
Offmann, Bernard;
Srinivasan, Narayanaswamy;
Sowdhamini, Ramanathan

Publication type:

Article

Same but not alike: Structure, flexibility and energetics of domains in multi-domain proteins are influenced by the presence of other domains.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 2, p. 1, doi. 10.1371/journal.pcbi.1006008

By:

Vishwanath, Sneha;
de Brevern, Alexandre G.;
Srinivasan, Narayanaswamy

Publication type:

Article

Recognition of sites of functional specialisation in all known eukaryotic protein kinase families.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 2, p. 1, doi. 10.1371/journal.pcbi.1005975

By:

Kalaivani, Raju;
Reema, Raju;
Srinivasan, Narayanaswamy

Publication type:

Article

Interface residues of transient protein-protein complexes have extensive intra-protein interactions apart from inter-protein interactions.

Published in:

Biology Direct, 2019, v. 14, n. 1, p. N.PAG, doi. 10.1186/s13062-019-0232-2

By:

Jayashree, Srinivasan;
Murugavel, Pavalam;
Sowdhamini, Ramanathan;
Srinivasan, Narayanaswamy

Publication type:

Article

Use of designed sequences in protein structure recognition.

Published in:

Biology Direct, 2018, v. 13, n. 1, p. 1, doi. 10.1186/s13062-018-0209-6

By:

Kumar, Gayatri;
Mudgal, Richa;
Srinivasan, Narayanaswamy;
Sandhya, Sankaran

Publication type:

Article

Recognition of a structural domain (RWDBD) in Gcn1 proteins that interacts with the RWD domain containing proteins.

Published in:

Biology Direct, 2017, v. 12, p. 1, doi. 10.1186/s13062-017-0184-3

By:

Rakesh, Ramachandran;
Krishnan, Rangachari;
Sattlegger, Evelyn;
Srinivasan, Narayanaswamy

Publication type:

Article

Computational recognition and analysis of hitherto uncharacterized nucleotide cyclase-like proteins in bacteria.

Published in:

Biology Direct, 2016, v. 11, p. 1, doi. 10.1186/s13062-016-0130-9

By:

Ramakrishnan, Gayatri;
Jain, Abha;
Chandra, Nagasuma;
Srinivasan, Narayanaswamy

Publication type:

Article

De-DUFing the DUFs: Deciphering distant evolutionary relationships of Domains of Unknown Function using sensitive homology detection methods.

Published in:

Biology Direct, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s13062-015-0069-2

By:

Mudgal, Richa;
Sandhya, Sankaran;
Chandra, Nagasuma;
Srinivasan, Narayanaswamy

Publication type:

Article

Modeling of interaction between cytochrome c and the WD domains of Apaf-1: bifurcated salt bridges underlying apoptosome assembly.

Published in:

Biology Direct, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s13062-015-0059-4

By:

Shalaeva, Daria N.;
Dibrova, Daria V.;
Galperin, Michael Y.;
Mulkidjanian, Armen Y.;
Osterman, Andrei L.;
Srinivasan, Narayanaswamy;
Berezovsky, Igor N.;
Vriend, Gerrit

Publication type:

Article

Sequence Divergence and Functional Specializations of the Ancient Spliceosomal SF3b: Implications in Flexibility and Adaptations of the Multi-Protein Complex.

Published in:

Frontiers in Genetics, 2022, v. 12, p. 1, doi. 10.3389/fgene.2021.747344

By:

Yazhini, Arangasamy;
Srinivasan, Narayanaswamy;
Sandhya, Sankaran

Publication type:

Article

The destabilization of human GCAP1 by a proline to leucine mutation might cause cone-rod dystrophy.

Published in:

Human Molecular Genetics, 2001, v. 10, n. 1, p. 47, doi. 10.1093/hmg/10.1.47

By:

Newbold, Richard J.;
Deery, Evelyne C.;
Walker, Caroline E.;
Wilkie, Susan E.;
Srinivasan, Narayanaswamy;
Hunt, David M.;
Bhattacharya, Shomi S.;
Warren, Martin J.

Publication type:

Article

Knowledge-based prediction of protein backbone conformation using a structural alphabet.

Published in:

PLoS ONE, 2017, v. 12, n. 11, p. 1, doi. 10.1371/journal.pone.0186215

By:

Vetrivel, Iyanar;
Mahajan, Swapnil;
Tyagi, Manoj;
Hoffmann, Lionel;
Sanejouand, Yves-Henri;
Srinivasan, Narayanaswamy;
De Brevern, Alexandre G.;
Cadet, Frédéric;
Offmann, Bernard

Publication type:

Article

iPBAvizu: a PyMOL plugin for an efficient 3D protein structure superimposition approach.

Published in:

Source Code for Biology & Medicine, 2019, v. 14, n. 1, p. N.PAG, doi. 10.1186/s13029-019-0075-3

By:

Faure, Guilhem;
Joseph, Agnel Praveen;
Craveur, Pierrick;
Narwani, Tarun J.;
Srinivasan, Narayanaswamy;
Gelly, Jean-Christophe;
Rebehmed, Joseph;
de Brevern, Alexandre G.

Publication type:

Article

A substitution matrix for structural alphabet based on structural alignment of homologous proteins and its applications.

Published in:

Proteins, 2006, v. 65, n. 1, p. 32, doi. 10.1002/prot.21087

By:

Tyagi, Manoj;
Gowri, Venkataraman S.;
Srinivasan, Narayanaswamy;
de Brevern, Alexandre G.;
Offmann, Bernard

Publication type:

Article

Exploring anti-malarial potential of FDA approved drugs: an in silico approach.

Published in:

Malaria Journal, 2017, v. 16, p. 1, doi. 10.1186/s12936-017-1937-2

By:

Ramakrishnan, Gayatri;
Chandra, Nagasuma;
Srinivasan, Narayanaswamy

Publication type:

Article

Mutations in SARS-CoV-2 viral RNA identified in Eastern India: Possible implications for the ongoing outbreak in India and impact on viral structure and host susceptibility.

Published in:

Journal of Biosciences, 2020, v. 45, n. 1, p. 1, doi. 10.1007/s12038-020-00046-1

By:

Maitra, Arindam;
Sarkar, Mamta Chawla;
Raheja, Harsha;
Biswas, Nidhan K;
Chakraborti, Sohini;
Singh, Animesh Kumar;
Ghosh, Shekhar;
Sarkar, Sumanta;
Patra, Subrata;
Mondal, Rajiv Kumar;
Ghosh, Trinath;
Chatterjee, Ananya;
Banu, Hasina;
Majumdar, Agniva;
Chinnaswamy, Sreedhar;
Srinivasan, Narayanaswamy;
Dutta, Shanta;
Das, Saumitra

Publication type:

Article

Master Blaster: an approach to sensitive identification of remotely related proteins.

Published in:

Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-87833-4

By:

Janaki, Chintalapati;
Gowri, Venkatraman S.;
Srinivasan, Narayanaswamy

Publication type:

Article

Signatures of conserved and unique molecular features in Afrotheria.

Published in:

Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-020-79559-6

By:

Yazhini, Arangasamy;
Srinivasan, Narayanaswamy;
Sandhya, Sankaran

Publication type:

Article

Publisher Correction: A genome-wide structure-based survey of nucleotide binding proteins in M. tuberculosis.

Published in:

2020

By:

Bhagavat, Raghu;
Kim, Heung-Bok;
Kim, Chang-Yub;
Terwilliger, Thomas C.;
Mehta, Dolly;
Srinivasan, Narayanaswamy;
Chandra, Nagasuma

Publication type:

Correction Notice

Structures of distantly related interacting protein homologs are less divergent than non‐interacting homologs.

Published in:

FEBS Open Bio, 2022, v. 12, n. 12, p. 2147, doi. 10.1002/2211-5463.13492

By:

Naveenkumar, Nagarajan;
Prabantu, Vasam Manjveekar;
Vishwanath, Sneha;
Sowdhamini, Ramanathan;
Srinivasan, Narayanaswamy

Publication type:

Article