Works by Sreedasyam, Avinash

Results: 39
    1

    Light-responsive expression atlas reveals the effects of light quality and intensity in Kalanchoë fedtschenkoi, a plant with crassulacean acid metabolism.

    Published in:
    GigaScience, 2020, v. 9, n. 3, p. N.PAG, doi. 10.1093/gigascience/giaa018
    By:
    • Zhang, Jin;
    • Hu, Rongbin;
    • Sreedasyam, Avinash;
    • Garcia, Travis M;
    • Lipzen, Anna;
    • Wang, Mei;
    • Yerramsetty, Pradeep;
    • Liu, Degao;
    • Ng, Vivian;
    • Schmutz, Jeremy;
    • Cushman, John C;
    • Borland, Anne M;
    • Pasha, Asher;
    • Provart, Nicholas J;
    • Chen, Jin-Gui;
    • Muchero, Wellington;
    • Tuskan, Gerald A;
    • Yang, Xiaohan
    Publication type:
    Article
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    Polyploidy‐mediated variations in glutamate receptor proteins linked to Fusarium wilt resistance in upland cotton.

    Published in:
    Plant Journal, 2025, v. 122, n. 1, p. 1, doi. 10.1111/tpj.70125
    By:
    • Parris, Stephen;
    • Lovell, John T.;
    • Ding, Feng;
    • Zhang, Zhenzhen;
    • Olvey, Jim;
    • Olvey, Mike;
    • Schmutz, Jeremy;
    • Grimwood, Jane;
    • Sreedasyam, Avinash;
    • Kumar, Sonika;
    • Li, Zhigang;
    • Joshi, Priyanka;
    • Jenkins, Jerry W.;
    • Plott, Christopher;
    • Stewart, Ada;
    • Webber, Jenell;
    • Stiller, Warwick N.;
    • Jones, Don C.;
    • Saski, Christopher A.
    Publication type:
    Article
    5
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    PEATmoss (Physcomitrella Expression Atlas Tool): a unified gene expression atlas for the model plant Physcomitrella patens.

    Published in:
    Plant Journal, 2020, v. 102, n. 1, p. 165, doi. 10.1111/tpj.14607
    By:
    • Fernandez‐Pozo, Noe;
    • Haas, Fabian B.;
    • Meyberg, Rabea;
    • Ullrich, Kristian K.;
    • Hiss, Manuel;
    • Perroud, Pierre‐François;
    • Hanke, Sebastian;
    • Kratz, Viktor;
    • Powell, Adrian F.;
    • Vesty, Eleanor F.;
    • Daum, Christopher G.;
    • Zane, Matthew;
    • Lipzen, Anna;
    • Sreedasyam, Avinash;
    • Grimwood, Jane;
    • Coates, Juliet C.;
    • Barry, Kerrie;
    • Schmutz, Jeremy;
    • Mueller, Lukas A.;
    • Rensing, Stefan A.
    Publication type:
    Article
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    A genome assembly and the somatic genetic and epigenetic mutation rate in a wild long-lived perennial Populus trichocarpa.

    Published in:
    Genome Biology, 2020, v. 21, n. 1, p. N.PAG, doi. 10.1186/s13059-020-02162-5
    By:
    • Hofmeister, Brigitte T.;
    • Denkena, Johanna;
    • Colomé-Tatché, Maria;
    • Shahryary, Yadollah;
    • Hazarika, Rashmi;
    • Grimwood, Jane;
    • Mamidi, Sujan;
    • Jenkins, Jerry;
    • Grabowski, Paul P.;
    • Sreedasyam, Avinash;
    • Shu, Shengqiang;
    • Barry, Kerrie;
    • Lail, Kathleen;
    • Adam, Catherine;
    • Lipzen, Anna;
    • Sorek, Rotem;
    • Kudrna, Dave;
    • Talag, Jayson;
    • Wing, Rod;
    • Hall, David W.
    Publication type:
    Article
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    Pests, diseases, and aridity have shaped the genome of Corymbia citriodora.

    Published in:
    Communications Biology, 2021, v. 4, n. 1, p. 1, doi. 10.1038/s42003-021-02009-0
    By:
    • Healey, Adam L.;
    • Shepherd, Mervyn;
    • King, Graham J.;
    • Butler, Jakob B.;
    • Freeman, Jules S.;
    • Lee, David J.;
    • Potts, Brad M.;
    • Silva-Junior, Orzenil B.;
    • Baten, Abdul;
    • Jenkins, Jerry;
    • Shu, Shengqiang;
    • Lovell, John T.;
    • Sreedasyam, Avinash;
    • Grimwood, Jane;
    • Furtado, Agnelo;
    • Grattapaglia, Dario;
    • Barry, Kerrie W.;
    • Hundley, Hope;
    • Simmons, Blake A.;
    • Schmutz, Jeremy
    Publication type:
    Article
    13

    Four chromosome scale genomes and a pan-genome annotation to accelerate pecan tree breeding.

    Published in:
    Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-24328-w
    By:
    • Lovell, John T.;
    • Bentley, Nolan B.;
    • Bhattarai, Gaurab;
    • Jenkins, Jerry W.;
    • Sreedasyam, Avinash;
    • Alarcon, Yanina;
    • Bock, Clive;
    • Boston, Lori Beth;
    • Carlson, Joseph;
    • Cervantes, Kimberly;
    • Clermont, Kristen;
    • Duke, Sara;
    • Krom, Nick;
    • Kubenka, Keith;
    • Mamidi, Sujan;
    • Mattison, Christopher P.;
    • Monteros, Maria J.;
    • Pisani, Cristina;
    • Plott, Christopher;
    • Rajasekar, Shanmugam
    Publication type:
    Article
    14

    The tepary bean genome provides insight into evolution and domestication under heat stress.

    Published in:
    Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-22858-x
    By:
    • Moghaddam, Samira Mafi;
    • Oladzad, Atena;
    • Koh, Chushin;
    • Ramsay, Larissa;
    • Hart, John P.;
    • Mamidi, Sujan;
    • Hoopes, Genevieve;
    • Sreedasyam, Avinash;
    • Wiersma, Andrew;
    • Zhao, Dongyan;
    • Grimwood, Jane;
    • Hamilton, John P.;
    • Jenkins, Jerry;
    • Vaillancourt, Brieanne;
    • Wood, Joshua C.;
    • Schmutz, Jeremy;
    • Kagale, Sateesh;
    • Porch, Timothy;
    • Bett, Kirstin E.;
    • Buell, C. Robin
    Publication type:
    Article
    15

    Finding New Cell Wall Regulatory Genes in Populus trichocarpa Using Multiple Lines of Evidence.

    Published in:
    Frontiers in Plant Science, 2019, p. 1, doi. 10.3389/fpls.2019.01249
    By:
    • Furches, Anna;
    • Kainer, David;
    • Weighill, Deborah;
    • Large, Annabel;
    • Jones, Piet;
    • Walker, Angelica M.;
    • Romero, Jonathon;
    • Gazolla, Joao Gabriel Felipe Machado;
    • Joubert, Wayne;
    • Shah, Manesh;
    • Streich, Jared;
    • Ranjan, Priya;
    • Schmutz, Jeremy;
    • Sreedasyam, Avinash;
    • Macaya-Sanz, David;
    • Zhao, Nan;
    • Martin, Madhavi Z.;
    • Rao, Xiaolan;
    • Dixon, Richard A.;
    • DiFazio, Stephen
    Publication type:
    Article
    16
    17

    Relics of interspecific hybridization retained in the genome of a drought-adapted peanut cultivar.

    Published in:
    G3: Genes | Genomes | Genetics, 2024, v. 14, n. 11, p. 1, doi. 10.1093/g3journal/jkae208
    By:
    • Grabowski, Paul P;
    • Dang, Phat;
    • Jenkins, Jerry J;
    • Sreedasyam, Avinash;
    • Webber, Jenell;
    • Lamb, Marshall;
    • Zhang, Qiong;
    • Sanz-Saez, Alvaro;
    • Feng, Yucheng;
    • Bunting, Victoria;
    • Talag, Jayson;
    • Clevenger, Josh;
    • Ozias-Akins, Peggy;
    • Holbrook, C Corley;
    • Chu, Ye;
    • Grimwood, Jane;
    • Schmutz, Jeremy;
    • Chen, Charles;
    • Lovell, John T
    Publication type:
    Article
    18

    The reference genome and abiotic stress responses of the model perennial grass Brachypodium sylvaticum.

    Published in:
    G3: Genes | Genomes | Genetics, 2024, v. 14, n. 1, p. 1, doi. 10.1093/g3journal/jkad245
    By:
    • Lei, Li;
    • Gordon, Sean P;
    • Liu, Lifeng;
    • Sade, Nir;
    • Lovell, John T;
    • Wilhelmi, Maria Del Mar Rubio;
    • Singan, Vasanth;
    • Sreedasyam, Avinash;
    • Hestrin, Rachel;
    • Phillips, Jeremy;
    • Hernandez, Bryan T;
    • Barry, Kerrie;
    • Shu, Shengqiang;
    • Jenkins, Jerry;
    • Schmutz, Jeremy;
    • Goodstein, David M;
    • Thilmony, Roger;
    • Blumwald, Eduardo;
    • Vogel, John P
    Publication type:
    Article
    19
    20

    Genome analyses reveal population structure and a purple stigma color gene candidate in finger millet.

    Published in:
    Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-38915-6
    By:
    • Devos, Katrien M.;
    • Qi, Peng;
    • Bahri, Bochra A.;
    • Gimode, Davis M.;
    • Jenike, Katharine;
    • Manthi, Samuel J.;
    • Lule, Dagnachew;
    • Lux, Thomas;
    • Martinez-Bello, Liliam;
    • Pendergast IV, Thomas H.;
    • Plott, Chris;
    • Saha, Dipnarayan;
    • Sidhu, Gurjot S.;
    • Sreedasyam, Avinash;
    • Wang, Xuewen;
    • Wang, Hao;
    • Wright, Hallie;
    • Zhao, Jianxin;
    • Deshpande, Santosh;
    • de Villiers, Santie
    Publication type:
    Article
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    JGI Plant Gene Atlas: an updateable transcriptome resource to improve functional gene descriptions across the plant kingdom.

    Published in:
    Nucleic Acids Research, 2023, v. 51, n. 16, p. 8383, doi. 10.1093/nar/gkad616
    By:
    • Sreedasyam, Avinash;
    • Plott, Christopher;
    • Hossain, Md Shakhawat;
    • Lovell, John T;
    • Grimwood, Jane;
    • Jenkins, Jerry W;
    • Daum, Christopher;
    • Barry, Kerrie;
    • Carlson, Joseph;
    • Shu, Shengqiang;
    • Phillips, Jeremy;
    • Amirebrahimi, Mojgan;
    • Zane, Matthew;
    • Wang, Mei;
    • Goodstein, David;
    • Haas, Fabian B;
    • Hiss, Manuel;
    • Perroud, Pierre-François;
    • Jawdy, Sara S;
    • Yang, Yongil
    Publication type:
    Article
    25

    A mosaic monoploid reference sequence for the highly complex genome of sugarcane.

    Published in:
    Nature Communications, 2018, v. 9, p. 1, doi. 10.1038/s41467-018-05051-5
    By:
    • Garsmeur, Olivier;
    • Droc, Gaetan;
    • Antonise, Rudie;
    • Grimwood, Jane;
    • Potier, Bernard;
    • Aitken, Karen;
    • Jenkins, Jerry;
    • Martin, Guillaume;
    • Charron, Carine;
    • Hervouet, Catherine;
    • Costet, Laurent;
    • Yahiaoui, Nabila;
    • Healey, Adam;
    • Sims, David;
    • Cherukuri, Yesesri;
    • Sreedasyam, Avinash;
    • Kilian, Andrzej;
    • Chan, Agnes;
    • Van Sluys, Marie-Anne;
    • Swaminathan, Kankshita
    Publication type:
    Article
    26

    Host genotype controls ecological change in the leaf fungal microbiome.

    Published in:
    PLoS Biology, 2022, v. 20, n. 8, p. 1, doi. 10.1371/journal.pbio.3001681
    By:
    • VanWallendael, Acer;
    • Benucci, Gian Maria Niccolo;
    • da Costa, Pedro Beschoren;
    • Fraser, Linnea;
    • Sreedasyam, Avinash;
    • Fritschi, Felix;
    • Juenger, Thomas E.;
    • Lovell, John T.;
    • Bonito, Gregory;
    • Lowry, David B.
    Publication type:
    Article
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    Genome-wide analysis of lectin receptorlike kinases in Populus.

    Published in:
    BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-016-3026-2
    By:
    • Yongil Yang;
    • Labbé, Jessy;
    • Muchero, Wellington;
    • Xiaohan Yang;
    • Jawdy, Sara S.;
    • Kennedy, Megan;
    • Johnson, Jenifer;
    • Sreedasyam, Avinash;
    • Schmutz, Jeremy;
    • Tuskan, Gerald A.;
    • Jin-Gui Chen
    Publication type:
    Article
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    The genomic landscape of molecular responses to natural drought stress in Panicum hallii.

    Published in:
    Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-07669-x
    By:
    • Lovell, John T.;
    • Jenkins, Jerry;
    • Lowry, David B.;
    • Mamidi, Sujan;
    • Sreedasyam, Avinash;
    • Weng, Xiaoyu;
    • Barry, Kerrie;
    • Bonnette, Jason;
    • Campitelli, Brandon;
    • Daum, Chris;
    • Gordon, Sean P.;
    • Gould, Billie A.;
    • Khasanova, Albina;
    • Lipzen, Anna;
    • MacQueen, Alice;
    • Palacio-Mejía, Juan Diego;
    • Plott, Christopher;
    • Shakirov, Eugene V.;
    • Shu, Shengqiang;
    • Yoshinaga, Yuko
    Publication type:
    Article
    38

    Revealing the transcriptomic complexity of switchgrass by PacBio long-read sequencing.

    Published in:
    Biotechnology for Biofuels, 2018, v. 11, n. 1, p. N.PAG, doi. 10.1186/s13068-018-1167-z
    By:
    • Zuo, Chunman;
    • Blow, Matthew;
    • Sreedasyam, Avinash;
    • Kuo, Rita C.;
    • Ramamoorthy, Govindarajan Kunde;
    • Torres-Jerez, Ivone;
    • Li, Guifen;
    • Wang, Mei;
    • Dilworth, David;
    • Barry, Kerrie;
    • Udvardi, Michael;
    • Schmutz, Jeremy;
    • Tang, Yuhong;
    • Xu, Ying
    Publication type:
    Article
    39

    A genome resource for green millet Setaria viridis enables discovery of agronomically valuable loci.

    Published in:
    Nature Biotechnology, 2020, v. 38, n. 10, p. 1203, doi. 10.1038/s41587-020-0681-2
    By:
    • Mamidi, Sujan;
    • Healey, Adam;
    • Huang, Pu;
    • Grimwood, Jane;
    • Jenkins, Jerry;
    • Barry, Kerrie;
    • Sreedasyam, Avinash;
    • Shu, Shengqiang;
    • Lovell, John T.;
    • Feldman, Maximilian;
    • Wu, Jinxia;
    • Yu, Yunqing;
    • Chen, Cindy;
    • Johnson, Jenifer;
    • Sakakibara, Hitoshi;
    • Kiba, Takatoshi;
    • Sakurai, Tetsuya;
    • Tavares, Rachel;
    • Nusinow, Dmitri A.;
    • Baxter, Ivan
    Publication type:
    Article