Works by Speth, Daan

Results: 20

Draft Genome of Scalindua rubra, Obtained from the Interface Above the Discovery Deep Brine in the Red Sea, Sheds Light on Potential Salt Adaptation Strategies in Anammox Bacteria.

Published in:

Microbial Ecology, 2017, v. 74, n. 1, p. 1, doi. 10.1007/s00248-017-0929-7

By:

Speth, Daan;
Lagkouvardos, Ilias;
Wang, Yong;
Qian, Pei-Yuan;
Dutilh, Bas;
Jetten, Mike

Publication type:

Article

Genome Characteristics of Two Novel Type I Methanotrophs Enriched from North Sea Sediments Containing Exclusively a Lanthanide-Dependent XoxF5-Type Methanol Dehydrogenase.

Published in:

Microbial Ecology, 2016, v. 72, n. 3, p. 503, doi. 10.1007/s00248-016-0808-7

By:

Vekeman, Bram;
Speth, Daan;
Wille, Jasper;
Cremers, Geert;
De Vos, Paul;
Op den Camp, Huub;
Heylen, Kim

Publication type:

Article

Sulfur cycling at natural hydrocarbon and sulfur seeps in Santa Paula Creek, CA.

Published in:

Geobiology, 2022, v. 20, n. 5, p. 707, doi. 10.1111/gbi.12512

By:

Aronson, Heidi S.;
Monteverde, Danielle R.;
Barnes, Ben Davis;
Johnson, Brooke R.;
Zawaski, Mike J.;
Speth, Daan R.;
Wang, Xingchen Tony;
Wu, Fenfang;
Webb, Samuel M.;
Trower, Elizabeth J.;
Magyar, John S.;
Sessions, Alex L.;
Orphan, Victoria J.;
Fischer, Woodward W.

Publication type:

Article

Microbial succession and dynamics in meromictic Mono Lake, California.

Published in:

Geobiology, 2021, v. 19, n. 4, p. 376, doi. 10.1111/gbi.12437

By:

Phillips, Alexandra A.;
Speth, Daan R.;
Miller, Laurence G.;
Wang, Xingchen T.;
Wu, Fenfang;
Medeiros, Patricia M.;
Monteverde, Danielle R.;
Osburn, Magdalena R.;
Berelson, William M.;
Betts, Hannah L.;
Wijker, Reto S.;
Mullin, Sean W.;
Johnson, Hope A.;
Orphan, Victoria J.;
Fischer, Woodward W.;
Sessions, Alex L.

Publication type:

Article

Persistent activity of aerobic methane-oxidizing bacteria in anoxic lake waters due to metabolic versatility.

Published in:

Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-49602-5

By:

Schorn, Sina;
Graf, Jon S.;
Littmann, Sten;
Hach, Philipp F.;
Lavik, Gaute;
Speth, Daan R.;
Schubert, Carsten J.;
Kuypers, Marcel M. M.;
Milucka, Jana

Publication type:

Article

Identification of the type II cytochrome c maturation pathway in anammox bacteria by comparative genomics.

Published in:

BMC Microbiology, 2013, v. 13, n. 1, p. 1, doi. 10.1186/1471-2180-13-265

By:

Ferousi, Christina;
Speth, Daan R.;
Reimann, Joachim;
Op den Camp, Huub J. M.;
Allen, James W. A.;
Keltjens, Jan T. M.;
Jetten, Mike S. M.

Publication type:

Article

Physiological potential and evolutionary trajectories of syntrophic sulfate-reducing bacterial partners of anaerobic methanotrophic archaea.

Published in:

PLoS Biology, 2023, v. 21, n. 9, p. 1, doi. 10.1371/journal.pbio.3002292

By:

Murali, Ranjani;
Yu, Hang;
Speth, Daan R.;
Wu, Fabai;
Metcalfe, Kyle S.;
Crémière, Antoine;
Laso-Pèrez, Rafael;
Malmstrom, Rex R.;
Goudeau, Danielle;
Woyke, Tanja;
Hatzenpichler, Roland;
Chadwick, Grayson L.;
Connon, Stephanie A.;
Orphan, Victoria J.

Publication type:

Article

Comparative Genomics of Candidatus Methylomirabilis Species and Description of Ca. Methylomirabilis Lanthanidiphila.

Published in:

Frontiers in Microbiology, 2018, p. N.PAG, doi. 10.3389/fmicb.2018.01672

By:

Versantvoort, Wouter;
Guerrero-Cruz, Simon;
Speth, Daan R.;
Frank, Jeroen;
Gambelli, Lavinia;
Cremers, Geert;
van Alen, Theo;
Jetten, Mike S. M.;
Kartal, Boran;
Op den Camp, Huub J. M.;
Reimann, Joachim

Publication type:

Article

A Metagenomics-Based Metabolic Model of Nitrate-Dependent Anaerobic Oxidation of Methane by Methanoperedens-Like Archaea.

Published in:

Frontiers in Microbiology, 2015, v. 6, p. 1, doi. 10.3389/fmicb.2015.01423

By:

Arshad, Arslan;
Speth, Daan R.;
de Graaf, Rob M.;
Op den Camp, Huub J. M.;
Jetten, Mike S. M.;
Welte, Cornelia U.

Publication type:

Article

Marinobacter subterrani, a genetically tractable neutrophilic Fe(II)-oxidizing strain isolated from the Soudan Iron Mine.

Published in:

Frontiers in Microbiology, 2015, p. 1, doi. 10.3389/fmicb.2015.00719

By:

Bonis, Benjamin M.;
Gralnick, Jeffrey A.;
Hongchen Jiang;
Speth, Daan R.

Publication type:

Article

Interactions between anaerobic ammonium and sulfur-oxidizing bacteria in a laboratory scale model system.

Published in:

Environmental Microbiology, 2014, v. 16, n. 11, p. 3487, doi. 10.1111/1462-2920.12487

By:

Russ, Lina;
Speth, Daan R.;
Jetten, Mike S. M.;
Op den Camp, Huub J. M.;
Kartal, Boran

Publication type:

Article

The metagenome of the marine anammox bacterium ' Candidatus Scalindua profunda' illustrates the versatility of this globally important nitrogen cycle bacterium.

Published in:

Environmental Microbiology, 2013, v. 15, n. 5, p. 1275, doi. 10.1111/j.1462-2920.2012.02774.x

By:

van de VossENberg, Jack;
WoebkEN, Dagmar;
Maalcke, Wouter J.;
Wessels, Hans J. C. T.;
Dutilh, Bas E.;
Kartal, Boran;
JanssEN ‐ MegENs, Eva M.;
Roeselers, Guus;
Yan, Jia;
Speth, Daan;
Gloerich, Jolein;
Geerts, Wim;
van der BiezEN, Erwin;
Pluk, WENdy;
Francoijs, Kees ‐ Jan;
Russ, Lina;
Lam, Phyllis;
Malfatti, Stefanie A.;
Tringe, Susannah GreEN;
Haaijer, Suzanne C. M.

Publication type:

Article

Genome-based microbial ecology of anammox granules in a full-scale wastewater treatment system.

Published in:

Nature Communications, 2016, v. 7, n. 3, p. 11172, doi. 10.1038/ncomms11172

By:

Speth, Daan R.;
in 't Zandt, Michiel H.;
Guerrero-Cruz, Simon;
Dutilh, Bas E.;
Jetten, Mike S. M.

Publication type:

Article

A highly abundant bacteriophage discovered in the unknown sequences of human faecal metagenomes.

Published in:

Nature Communications, 2014, v. 5, n. 7, p. 4498, doi. 10.1038/ncomms5498

By:

Dutilh, Bas E.;
Cassman, Noriko;
McNair, Katelyn;
Sanchez, Savannah E.;
Silva, Genivaldo G. Z.;
Boling, Lance;
Barr, Jeremy J.;
Speth, Daan R.;
Seguritan, Victor;
Aziz, Ramy K.;
Felts, Ben;
Dinsdale, Elizabeth A.;
Mokili, John L.;
Edwards, Robert A.

Publication type:

Article

Thermotogota diversity and distribution patterns revealed in Auka and JaichMaa 'ja 'ag hydrothermal vent fields in the Pescadero Basin, Gulf of California.

Published in:

PeerJ, 2024, p. 1, doi. 10.7717/peerj.17724

By:

Peña-Salinas, Manet E.;
Speth, Daan R.;
Utter, Daniel R.;
Spelz, Ronald M.;
Lim, Sujung;
Zierenberg, Robert;
Caress, David W.;
Núñez, Patricia G.;
Vázquez, Roberto;
Orphan, Victoria J.

Publication type:

Article

Metabolic marker gene mining provides insight in global mcrA diversity and, coupled with targeted genome reconstruction, sheds further light on metabolic potential of the Methanomassiliicoccales.

Published in:

PeerJ, 2018, p. 1, doi. 10.7717/peerj.5614

By:

Speth, Daan R.;
Orphan, Victoria J.

Publication type:

Article

A Novel Laboratory-Scale Mesocosm Setup to Study Methane Emission Mitigation by Sphagnum Mosses and Associated Methanotrophs.

Published in:

Frontiers in Microbiology, 2021, v. 11, p. N.PAG, doi. 10.3389/fmicb.2021.651103

By:

Kox, Martine A. R.;
Smolders, Alfons J. P.;
Speth, Daan R.;
Lamers, Leon P. M.;
Op den Camp, Huub J. M.;
Jetten, Mike S. M.;
van Kessel, Maartje A. H. J.

Publication type:

Article

Comparative genomics reveals electron transfer and syntrophic mechanisms differentiating methanotrophic and methanogenic archaea.

Published in:

PLoS Biology, 2022, v. 20, n. 1, p. 1, doi. 10.1371/journal.pbio.3001508

By:

Chadwick, Grayson L.;
Skennerton, Connor T.;
Laso-Pérez, Rafael;
Leu, Andy O.;
Speth, Daan R.;
Yu, Hang;
Morgan-Lang, Connor;
Hatzenpichler, Roland;
Goudeau, Danielle;
Malmstrom, Rex;
Brazelton, William J.;
Woyke, Tanja;
Hallam, Steven J.;
Tyson, Gene W.;
Wegener, Gunter;
Boetius, Antje;
Orphan, Victoria J.

Publication type:

Article

Biogeochemical Exploration of the Pescadero Basin Vents.

Published in:

Oceanography, 2018, v. 31, p. 42

By:

Michel, Anna;
Wankel, Scott;
Beaulieu, Stace;
Soule, S. Adam;
Mullineaux, Lauren;
Coleman, Dwight;
Briones, Elva Escobar;
Gaytán-Caballero, Adriana;
McDermott, Jill;
Mills, Susan;
Speth, Daan;
Zierenberg, Robert

Publication type:

Article

Microbial communities of Auka hydrothermal sediments shed light on vent biogeography and the evolutionary history of thermophily.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2022, v. 16, n. 7, p. 1750, doi. 10.1038/s41396-022-01222-x

By:

Speth, Daan R.;
Yu, Feiqiao B.;
Connon, Stephanie A.;
Lim, Sujung;
Magyar, John S.;
Peña-Salinas, Manet E.;
Quake, Stephen R.;
Orphan, Victoria J.

Publication type:

Article