Found: 27

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  • Multi-modal molecular programs regulate melanoma cell state.

    Published in:
    Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-31510-1
    By:
    • Andrews, Miles C.;
    • Oba, Junna;
    • Wu, Chang-Jiun;
    • Zhu, Haifeng;
    • Karpinets, Tatiana;
    • Creasy, Caitlin A.;
    • Forget, Marie-Andrée;
    • Yu, Xiaoxing;
    • Song, Xingzhi;
    • Mao, Xizeng;
    • Robertson, A. Gordon;
    • Romano, Gabriele;
    • Li, Peng;
    • Burton, Elizabeth M.;
    • Lu, Yiling;
    • Sloane, Robert Szczepaniak;
    • Wani, Khalida M.;
    • Rai, Kunal;
    • Lazar, Alexander J.;
    • Haydu, Lauren E.
    Publication type:
    Article

  • The histologic phenotype of lung cancers is associated with transcriptomic features rather than genomic characteristics.

    Published in:
    Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-27341-1
    By:
    • Tang, Ming;
    • Abbas, Hussein A.;
    • Negrao, Marcelo V.;
    • Ramineni, Maheshwari;
    • Hu, Xin;
    • Hubert, Shawna Marie;
    • Fujimoto, Junya;
    • Reuben, Alexandre;
    • Varghese, Susan;
    • Zhang, Jianhua;
    • Li, Jun;
    • Chow, Chi-Wan;
    • Mao, Xizeng;
    • Song, Xingzhi;
    • Lee, Won-Chul;
    • Wu, Jia;
    • Little, Latasha;
    • Gumbs, Curtis;
    • Behrens, Carmen;
    • Moran, Cesar
    Publication type:
    Article

  • Author Correction: Clonal evolution of acute myeloid leukemia revealed by high-throughput single-cell genomics.

    Published in:
    2021
    By:
    • Morita, Kiyomi;
    • Wang, Feng;
    • Jahn, Katharina;
    • Hu, Tianyuan;
    • Tanaka, Tomoyuki;
    • Sasaki, Yuya;
    • Kuipers, Jack;
    • Loghavi, Sanam;
    • Wang, Sa A.;
    • Yan, Yuanqing;
    • Furudate, Ken;
    • Matthews, Jairo;
    • Little, Latasha;
    • Gumbs, Curtis;
    • Zhang, Jianhua;
    • Song, Xingzhi;
    • Thompson, Erika;
    • Patel, Keyur P.;
    • Bueso-Ramos, Carlos E.;
    • DiNardo, Courtney D.
    Publication type:
    Correction Notice

  • Leukemia stemness and co-occurring mutations drive resistance to IDH inhibitors in acute myeloid leukemia.

    Published in:
    Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-22874-x
    By:
    • Wang, Feng;
    • Morita, Kiyomi;
    • DiNardo, Courtney D.;
    • Furudate, Ken;
    • Tanaka, Tomoyuki;
    • Yan, Yuanqing;
    • Patel, Keyur P.;
    • MacBeth, Kyle J.;
    • Wu, Bin;
    • Liu, Guowen;
    • Frattini, Mark;
    • Matthews, Jairo A.;
    • Little, Latasha D.;
    • Gumbs, Curtis;
    • Song, Xingzhi;
    • Zhang, Jianhua;
    • Thompson, Erika J.;
    • Kadia, Tapan M.;
    • Garcia-Manero, Guillermo;
    • Jabbour, Elias
    Publication type:
    Article

  • PTEN in triple-negative breast carcinoma: protein expression and genomic alteration in pretreatment and posttreatment specimens.

    Published in:
    Therapeutic Advances in Medical Oncology, 2023, p. 1, doi. 10.1177/17588359231189422
    By:
    • Chen, Hui;
    • Ding, Qingqing;
    • Khazai, Laila;
    • Zhao, Li;
    • Damodaran, Senthil;
    • Litton, Jennifer K.;
    • Rauch, Gaiane M.;
    • Yam, Clinton;
    • Chang, Jeffrey T.;
    • Seth, Sahil;
    • Lim, Bora;
    • Thompson, Alastair M.;
    • Mittendorf, Elizabeth A.;
    • Adrada, Beatriz;
    • Virani, Kiran;
    • White, Jason B.;
    • Ravenberg, Elizabeth;
    • Song, Xingzhi;
    • Candelaria, Rosalind;
    • Arun, Banu
    Publication type:
    Article

  • Direct selection of human genomic loci by microarray hybridization.

    Published in:
    Nature Methods, 2007, v. 4, n. 11, p. 903, doi. 10.1038/nmeth1111
    By:
    • Albert, Thomas J.;
    • Molla, Michael N.;
    • Muzny, Donna M.;
    • Nazareth, Lynne;
    • Wheeler, David;
    • Xingzhi Song;
    • Richmond, Todd A.;
    • Middle, Chris M.;
    • Rodesch, Matthew J.;
    • Packard, Charles J.;
    • Weinstock, George M.;
    • Gibbs, Richard A.
    Publication type:
    Article

  • Genomic and immune heterogeneity are associated with differential responses to therapy in melanoma.

    Published in:
    NPJ Genomic Medicine, 2017, v. 2, n. 1, p. N.PAG, doi. 10.1038/s41525-017-0013-8
    By:
    • Reuben, Alexandre;
    • Spencer, Christine N.;
    • Prieto, Peter A.;
    • Gopalakrishnan, Vancheswaran;
    • Reddy, Sangeetha M.;
    • Miller, John P.;
    • Mao, Xizeng;
    • De Macedo, Mariana Petaccia;
    • Chen, Jiong;
    • Song, Xingzhi;
    • Jiang, Hong;
    • Chen, Pei-Ling;
    • Beird, Hannah C.;
    • Garber, Haven R.;
    • Roh, Whijae;
    • Wani, Khalida;
    • Chen, Eveline;
    • Haymaker, Cara;
    • Forget, Marie-Andrée;
    • Little, Latasha D.
    Publication type:
    Article

  • Whole genome and reverse protein phase array landscapes of patient derived osteosarcoma xenograft models.

    Published in:
    Scientific Reports, 2024, v. 14, n. 1, p. 1, doi. 10.1038/s41598-024-69382-8
    By:
    • Wu, Chia-Chin;
    • Huang, Licai;
    • Zhang, Zhongting;
    • Ju, Zhenlin;
    • Song, Xingzhi;
    • Kolb, E. Anders;
    • Zhang, Wendong;
    • Gill, Jonathan;
    • Ha, Min;
    • Smith, Malcolm A.;
    • Houghton, Peter;
    • Morton, Christopher L.;
    • Kurmasheva, Raushan;
    • Maris, John;
    • Mosse, Yael;
    • Lu, Yiling;
    • Gorlick, Richard;
    • Futreal, P. Andrew;
    • Beird, Hannah C.
    Publication type:
    Article

  • Intratumoral microbiome of adenoid cystic carcinomas and comparison with other head and neck cancers.

    Published in:
    Scientific Reports, 2024, v. 14, n. 1, p. 1, doi. 10.1038/s41598-024-65939-9
    By:
    • Karpinets, Tatiana V.;
    • Mitani, Yoshitsugu;
    • Chang, Chia-Chi;
    • Wu, Xiaogang;
    • Song, Xingzhi;
    • Flores, Ivonne I.;
    • McDaniel, Lauren K.;
    • Hoballah, Yasmine M.;
    • Veguilla, Fabiana J.;
    • Ferrarotto, Renata;
    • Colbert, Lauren E.;
    • Ajami, Nadim J.;
    • Jenq, Robert R.;
    • Zhang, Jianhua;
    • Futreal, Andrew P.;
    • El-Naggar, Adel K.
    Publication type:
    Article

  • Genotype-to-Phenotype Associations in the Aggressive Variant Prostate Cancer Molecular Profile (AVPC-m) Components.

    Published in:
    Cancers, 2022, v. 14, n. 13, p. N.PAG, doi. 10.3390/cancers14133233
    By:
    • Soundararajan, Rama;
    • Viscuse, Paul;
    • Pilie, Patrick;
    • Liu, Jingjing;
    • Logotheti, Souzana;
    • Laberiano Fernández, Caddie;
    • Lorenzini, Daniele;
    • Hoang, Anh;
    • Lu, Wei;
    • Soto, Luisa Maren Solis;
    • Wistuba, Ignacio I.;
    • Xu, Mingchu;
    • Song, Xingzhi;
    • Shepherd, Peter D. A.;
    • Navone, Nora M.;
    • Tidwell, Rebecca S. S.;
    • Lozano, Guillermina;
    • Logothetis, Christopher;
    • Zhang, Jianhua;
    • Long, James P.
    Publication type:
    Article

  • Multiregional transcriptomic profiling provides improved prognostic insight in localized non-small cell lung cancer.

    Published in:
    NPJ Precision Oncology, 2024, v. 8, n. 1, p. 1, doi. 10.1038/s41698-024-00680-0
    By:
    • Li, Chenyang;
    • Nguyen, Thinh T.;
    • Li, Jian-Rong;
    • Song, Xingzhi;
    • Fujimoto, Junya;
    • Little, Latasha;
    • Gumb, Curtis;
    • Chow, Chi-Wan B.;
    • Wistuba, Ignacio I.;
    • Futreal, Andrew P.;
    • Zhang, Jianhua;
    • Hubert, Shawna M.;
    • Heymach, John V.;
    • Wu, Jia;
    • Amos, Christopher I.;
    • Zhang, Jianjun;
    • Cheng, Chao
    Publication type:
    Article

  • Draft Genome Assembly for the Tibetan Black Bear (Ursus thibetanus thibetanus).

    Published in:
    Frontiers in Genetics, 2020, p. 1, doi. 10.3389/fgene.2020.00231
    By:
    • Zhu, Chenglong;
    • Xu, Wenjie;
    • Li, Jianchuan;
    • Liu, Chang;
    • Hu, Mingliang;
    • Yuan, Yuan;
    • Yuan, Ke;
    • Zhang, Yijiuling;
    • Song, Xingzhi;
    • Han, Jin;
    • Cui, Xinxin
    Publication type:
    Article

  • Co-clinical assessment identifies patterns of BRAF inhibitor resistance in melanoma.

    Published in:
    Journal of Clinical Investigation, 2015, v. 125, n. 4, p. 1459, doi. 10.1172/JCI78954
    By:
    • Kwong, Lawrence N.;
    • Boland, Genevieve M.;
    • Frederick, Dennie T.;
    • Helms, Timothy L.;
    • Akid, Ahmad T.;
    • Miller, John P.;
    • Shan Jiang;
    • Cooper, Zachary A.;
    • Xingzhi Song;
    • Seth, Sahil;
    • Kamara, Jennifer;
    • Protopopov, Alexei;
    • Mills, Gordon B.;
    • Flaherty, Keith T.;
    • Wargo, Jennifer A.;
    • Chin, Lynda
    Publication type:
    Article

  • Genomic heterogeneity of multiple synchronous lung cancer.

    Published in:
    Nature Communications, 2016, v. 7, n. 10, p. 13200, doi. 10.1038/ncomms13200
    By:
    • Liu, Yu;
    • Zhang, Jianjun;
    • Li, Lin;
    • Yin, Guangliang;
    • Zhang, Jianhua;
    • Zheng, Shan;
    • Cheung, Hannah;
    • Wu, Ning;
    • Lu, Ning;
    • Mao, Xizeng;
    • Yang, Longhai;
    • Zhang, Jiexin;
    • Zhang, Li;
    • Seth, Sahil;
    • Chen, Huang;
    • Song, Xingzhi;
    • Liu, Kan;
    • Xie, Yongqiang;
    • Zhou, Lina;
    • Zhao, Chuanduo
    Publication type:
    Article

  • Metabolic reprogramming toward oxidative phosphorylation identifies a therapeutic target for mantle cell lymphoma.

    Published in:
    Science Translational Medicine, 2019, v. 11, n. 491, p. N.PAG, doi. 10.1126/scitranslmed.aau1167
    By:
    • Zhang, Liang;
    • Yao, Yixin;
    • Zhang, Shaojun;
    • Liu, Yang;
    • Guo, Hui;
    • Ahmed, Makhdum;
    • Bell, Taylor;
    • Zhang, Hui;
    • Han, Guangchun;
    • Lorence, Elizabeth;
    • Badillo, Maria;
    • Zhou, Shouhao;
    • Sun, Yuting;
    • Di Francesco, M. Emilia;
    • Feng, Ningping;
    • Haun, Randy;
    • Lan, Renny;
    • Mackintosh, Samuel G.;
    • Mao, Xizeng;
    • Song, Xingzhi
    Publication type:
    Article

  • Evolution of the AML Genome and Epigenome during IDH Inhibitor Therapy and their Association with Clinical Response and Resistance.

    Published in:
    Clinical Lymphoma, Myeloma & Leukemia, 2019, v. 19, p. S238, doi. 10.1016/j.clml.2019.07.131
    By:
    • Wang, Feng;
    • Morita, Kiyomi;
    • DiNardo, Courtney;
    • Patel, Keyur;
    • MacBeth, Kyle;
    • Wu, Bin;
    • Attar, Eyal;
    • Liu, Guowen;
    • Tossolini, Alessandra;
    • Frattini, Mark;
    • Matthews, Jairo;
    • Little, Latasha;
    • Gumbs, Curtis;
    • Tippen, Samantha;
    • Song, Xingzhi;
    • Zhang, Jianhua;
    • Thompson, Erika;
    • Kadia, Tapan;
    • Garcia-Manero, Guillermo;
    • Jabbour, Elias
    Publication type:
    Article

  • Deconvolution of Clonal Heterogeneity in Acute Myeloid Leukemia using Single-Cell DNA Sequencing.

    Published in:
    Clinical Lymphoma, Myeloma & Leukemia, 2019, v. 19, p. S234, doi. 10.1016/j.clml.2019.07.121
    By:
    • Morita, Kiyomi;
    • Wang, Feng;
    • Jahn, Katharina;
    • Kuipers, Jack;
    • Yan, Yuanqing;
    • Matthews, Jairo;
    • Little, Latasha;
    • Gumbs, Curtis;
    • Chen, Shujuan;
    • Zhang, Jianhua;
    • Song, Xingzhi;
    • Thompson, Erika;
    • Patel, Keyur;
    • Bueso-Ramos, Carlos;
    • DiNardo, Courtney;
    • Ravandi, Farhad;
    • Jabbour, Elias;
    • Andreeff, Michael;
    • Cortes, Jorge;
    • Konopleva, Marina
    Publication type:
    Article

  • The Landscape of Genotype-Phenotype Correlation in AML.

    Published in:
    Clinical Lymphoma, Myeloma & Leukemia, 2018, v. 18, p. S209, doi. 10.1016/j.clml.2018.07.066
    By:
    • Morita, Kiyomi;
    • Wang, Feng;
    • Yan, Yuanqing;
    • Burks, Jared;
    • Gumbs, Curtis;
    • Latasha, Little;
    • Tippen, Samantha;
    • Thornton, Rebecca;
    • Coyle, Marcus;
    • Zhang, Jianhua;
    • Xingzhi, Song;
    • DiNardo, Courtney;
    • Jabbour, Elias;
    • Andreeff, Michael;
    • Cortes, Jorge;
    • Konopleva, Marina;
    • Patel, Keyur;
    • Garcia-Manero, Guillermo;
    • Kantarjian, Hagop;
    • Bueso-Ramos, Carlos
    Publication type:
    Article

  • Genomic Landscape of Mixed Phenotype Acute Leukemia (MPAL).

    Published in:
    Clinical Lymphoma, Myeloma & Leukemia, 2017, v. 17, p. S273, doi. 10.1016/j.clml.2017.07.050
    By:
    • Morita, Kiyomi;
    • Wang, Feng;
    • Patel, Keyur;
    • Bueso-Ramos, Carlos;
    • Zhar, Abdallah Abou;
    • Gumbs, Curtis;
    • Little, Latasha;
    • Tippen, Samantha;
    • Thornton, Rebecca;
    • Coyle, Marcus;
    • Zhang, Jianhua;
    • Song, Xingzhi;
    • Mendoza, Marisela;
    • Wu, Chang-Jiun;
    • Kornblau, Steven;
    • DiNardo, Courtney;
    • Ravandi, Farhad;
    • Garcia-Manero, Guillermo;
    • Jabbour, Elias;
    • Andreeff, Michael
    Publication type:
    Article

  • Multi-omic molecular profiling reveals potentially targetable abnormalities shared across multiple histologies of brain metastasis.

    Published in:
    Acta Neuropathologica, 2021, v. 141, n. 2, p. 303, doi. 10.1007/s00401-020-02256-1
    By:
    • Fukumura, Kazutaka;
    • Malgulwar, Prit Benny;
    • Fischer, Grant M.;
    • Hu, Xiaoding;
    • Mao, Xizeng;
    • Song, Xingzhi;
    • Hernandez, Sharia D.;
    • Zhang, Xiang H.-F.;
    • Zhang, Jianhua;
    • Parra, Edwin Roger;
    • Yu, Dihua;
    • Debeb, Bisrat G.;
    • Davies, Michael A.;
    • Huse, Jason T.
    Publication type:
    Article

  • Feasibility of a novel non-invasive swab technique for serial whole-exome sequencing of cervical tumors during chemoradiation therapy.

    Published in:
    PLoS ONE, 2022, v. 17, n. 10, p. 1, doi. 10.1371/journal.pone.0274457
    By:
    • Bronk, Julianna K.;
    • Kapadia, Chiraag;
    • Wu, Xiaogang;
    • Chapman, Bhavana V.;
    • Wang, Rui;
    • Karpinets, Tatiana V.;
    • Song, Xingzhi;
    • Futreal, Andrew M.;
    • Zhang, Jianhua;
    • Klopp, Ann H.;
    • Colbert, Lauren E.
    Publication type:
    Article

  • Metagenomes of rectal swabs in larger, advanced stage cervical cancers have enhanced mucus degrading functionalities and distinct taxonomic structure.

    Published in:
    2022
    By:
    • Karpinets, Tatiana V.;
    • Wu, Xiaogang;
    • Solley, Travis;
    • El Alam, Molly B.;
    • Sims, Travis T.;
    • Yoshida-Court, Kyoko;
    • Lynn, Erica;
    • Ahmed-Kaddar, Mustapha;
    • Biegert, Greyson;
    • Yue, Jingyan;
    • Song, Xingzhi;
    • Sun, Huandong;
    • Petrosino, Joseph F.;
    • Mezzari, Melissa P.;
    • Okhuysen, Pablo;
    • Eifel, Patricia J.;
    • Jhingran, Anuja;
    • Lin, Lilie L.;
    • Schmeler, Kathleen M.;
    • Ramondetta, Lois
    Publication type:
    journal article

  • Global impact of somatic structural variation on the DNA methylome of human cancers.

    Published in:
    Genome Biology, 2019, v. 20, n. 1, p. N.PAG, doi. 10.1186/s13059-019-1818-9
    By:
    • Zhang, Yiqun;
    • Yang, Lixing;
    • Kucherlapati, Melanie;
    • Hadjipanayis, Angela;
    • Pantazi, Angeliki;
    • Bristow, Christopher A.;
    • Lee, Eunjung Alice;
    • Mahadeshwar, Harshad S.;
    • Tang, Jiabin;
    • Zhang, Jianhua;
    • Seth, Sahil;
    • Lee, Semin;
    • Ren, Xiaojia;
    • Song, Xingzhi;
    • Sun, Huandong;
    • Seidman, Jonathan;
    • Luquette, Lovelace J.;
    • Xi, Ruibin;
    • Chin, Lynda;
    • Protopopov, Alexei
    Publication type:
    Article

  • Immunogenomic intertumor heterogeneity across primary and metastatic sites in a patient with lung adenocarcinoma.

    Published in:
    Journal of Experimental & Clinical Cancer Research (17569966), 2022, v. 41, n. 1, p. 1, doi. 10.1186/s13046-022-02361-x
    By:
    • Chen, Runzhe;
    • Li, Jun;
    • Fujimoto, Junya;
    • Hong, Lingzhi;
    • Hu, Xin;
    • Quek, Kelly;
    • Tang, Ming;
    • Mitra, Akash;
    • Behrens, Carmen;
    • Chow, Chi-Wan;
    • Jiang, Peixin;
    • Little, Latasha D.;
    • Gumbs, Curtis;
    • Song, Xingzhi;
    • Zhang, Jianhua;
    • Tan, Dongfeng;
    • Heymach, John V.;
    • Wistuba, Ignacio;
    • Futreal, P. Andrew;
    • Gibbons, Don L.
    Publication type:
    Article

  • Publisher Correction: Clonal evolution of acute myeloid leukemia revealed by high-throughput single-cell genomics.

    Published in:
    2020
    By:
    • Morita, Kiyomi;
    • Wang, Feng;
    • Jahn, Katharina;
    • Hu, Tianyuan;
    • Tanaka, Tomoyuki;
    • Sasaki, Yuya;
    • Kuipers, Jack;
    • Loghavi, Sanam;
    • Wang, Sa A.;
    • Yan, Yuanqing;
    • Furudate, Ken;
    • Matthews, Jairo;
    • Little, Latasha;
    • Gumbs, Curtis;
    • Zhang, Jianhua;
    • Song, Xingzhi;
    • Thompson, Erika;
    • Patel, Keyur P.;
    • Bueso-Ramos, Carlos E.;
    • DiNardo, Courtney D.
    Publication type:
    Correction Notice

  • Clonal evolution of acute myeloid leukemia revealed by high-throughput single-cell genomics.

    Published in:
    Nature Communications, 2020, v. 11, n. 1, p. N.PAG, doi. 10.1038/s41467-020-19119-8
    By:
    • Morita, Kiyomi;
    • Wang, Feng;
    • Jahn, Katharina;
    • Hu, Tianyuan;
    • Tanaka, Tomoyuki;
    • Sasaki, Yuya;
    • Kuipers, Jack;
    • Loghavi, Sanam;
    • Wang, Sa A.;
    • Yan, Yuanqing;
    • Furudate, Ken;
    • Matthews, Jairo;
    • Little, Latasha;
    • Gumbs, Curtis;
    • Zhang, Jianhua;
    • Song, Xingzhi;
    • Thompson, Erika;
    • Patel, Keyur P.;
    • Bueso-Ramos, Carlos E.;
    • DiNardo, Courtney D.
    Publication type:
    Article

  • Spatially resolved analyses link genomic and immune diversity and reveal unfavorable neutrophil activation in melanoma.

    Published in:
    Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-020-15538-9
    By:
    • Mitra, Akash;
    • Andrews, Miles C.;
    • Roh, Whijae;
    • De Macedo, Marianna Petaccia;
    • Hudgens, Courtney W.;
    • Carapeto, Fernando;
    • Singh, Shailbala;
    • Reuben, Alexandre;
    • Wang, Feng;
    • Mao, Xizeng;
    • Song, Xingzhi;
    • Wani, Khalida;
    • Tippen, Samantha;
    • Ng, Kwok-Shing;
    • Schalck, Aislyn;
    • Sakellariou-Thompson, Donald A.;
    • Chen, Eveline;
    • Reddy, Sangeetha M.;
    • Spencer, Christine N.;
    • Wiesnoski, Diana
    Publication type:
    Article