Works by Song, Jikui

Results: 33

BAHCC1 binds H4K20me1 to facilitate the MCM complex loading and DNA replication.

Published in:

Nature Communications, 2025, v. 16, n. 1, p. 1, doi. 10.1038/s41467-025-61284-1

By:

Li, Dongxu;
Zhang, Zhi-Min;
Mei, Liu;
Yu, Yao;
Guo, Yiran;
Mackintosh, Samuel G.;
Chen, Jianbin;
Allison, David F.;
Kim, Arum;
Storey, Aaron J.;
Edmondson, Ricky D.;
Byrum, Stephanie D.;
Tackett, Alan J.;
Cai, Ling;
Cook, Jeanette G.;
Song, Jikui;
Wang, Gang Greg

Publication type:

Article

Multi-layered heterochromatin interaction as a switch for DIM2-mediated DNA methylation.

Published in:

Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-51246-4

By:

Shao, Zengyu;
Lu, Jiuwei;
Khudaverdyan, Nelli;
Song, Jikui

Publication type:

Article

Suppression of Type I Interferon Signaling by Flavivirus NS5.

Published in:

Viruses (1999-4915), 2018, v. 10, n. 12, p. 712, doi. 10.3390/v10120712

By:

Thurmond, Stephanie;
Wang, Boxiao;
Song, Jikui;
Hai, Rong

Publication type:

Article

The role of substrate deformation in context‐dependent non‐CG DNA methylation.

Published in:

FASEB Journal, 2022, v. 36, p. N.PAG, doi. 10.1096/fasebj.2022.36.S1.0R445

By:

Song, Jikui

Publication type:

Article

Comparison of cell-based and cell-free protocols for producing target proteins from the Arabidopsis thaliana genome for structural studies.

Published in:

Proteins, 2005, v. 59, n. 3, p. 633, doi. 10.1002/prot.20436

By:

Tyler, Robert C.;
Aceti, David J.;
Bingman, Craig A.;
Cornilescu, Claudia C.;
Fox, Brian G.;
Frederick, Ronnie O.;
Jeon, Won Bae;
Lee, Min S.;
Newman, Craig S.;
Peterson, Francis C.;
Phillips, George N.;
Shahan, Mark N.;
Singh, Shanteri;
Song, Jikui;
Sreenath, Hassan K.;
Tyler, Ejan M.;
Ulrich, Eldon L.;
Vinarov, Dmitriy A.;
Vojtik, Frank C.;
Volkman, Brian F.

Publication type:

Article

Structural Basis of DNMT1 and DNMT3A-Mediated DNA Methylation.

Published in:

Genes, 2018, v. 9, n. 12, p. 620, doi. 10.3390/genes9120620

By:

Ren, Wendan;
Gao, Linfeng;
Song, Jikui

Publication type:

Article

Structure of DNMT3B homo-oligomer reveals vulnerability to impairment by ICF mutations.

Published in:

Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-31933-w

By:

Gao, Linfeng;
Guo, Yiran;
Biswal, Mahamaya;
Lu, Jiuwei;
Yin, Jiekai;
Fang, Jian;
Chen, Xinyi;
Shao, Zengyu;
Huang, Mengjiang;
Wang, Yinsheng;
Wang, Gang Greg;
Song, Jikui

Publication type:

Article

Mechanistic basis for maintenance of CHG DNA methylation in plants.

Published in:

Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-31627-3

By:

Fang, Jian;
Jiang, Jianjun;
Leichter, Sarah M.;
Liu, Jie;
Biswal, Mahamaya;
Khudaverdyan, Nelli;
Zhong, Xuehua;
Song, Jikui

Publication type:

Article

Structural basis for the ORC1‐Cyclin A association.

Published in:

Protein Science: A Publication of the Protein Society, 2019, v. 28, n. 9, p. 1727, doi. 10.1002/pro.3689

By:

Wang, Boxiao;
Song, Jikui

Publication type:

Article

Solution structure of human sorting nexin 22.

Published in:

Protein Science: A Publication of the Protein Society, 2007, v. 16, n. 5, p. 807, doi. 10.1110/ps.072752407

By:

Song, Jikui;
Zhao, Kate Qin;
Newman, Carrie L. Loushin;
Vinarov, Dmitriy A.;
Markley, John L.

Publication type:

Article

Solution structure of At3g04780.1-des15, an Arabidopsis thaliana ortholog of the C-terminal domain of human thioredoxin-like protein.

Published in:

Protein Science: A Publication of the Protein Society, 2005, v. 14, n. 4, p. 1059, doi. 10.1110/ps.041246805

By:

Song, Jikui;
Tyler, Robert C.;
Wrobel, Russell L.;
Frederick, Ronnie O.;
Vojtek, Frank C.;
Jeon, Won Bae;
Lee, Min S.;
Markley, John L.

Publication type:

Article

Two serine residues in Pseudomonas syringae effector HopZ1a are required for acetyltransferase activity and association with the host co-factor.

Published in:

New Phytologist, 2015, v. 208, n. 4, p. 1157, doi. 10.1111/nph.13528

By:

Ma, Ka‐Wai;
Jiang, Shushu;
Hawara, Eva;
Lee, DongHyuk;
Pan, Songqin;
Coaker, Gitta;
Song, Jikui;
Ma, Wenbo

Publication type:

Article

Structure-guided functional suppression of AML-associated DNMT3A hotspot mutations.

Published in:

Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-47398-y

By:

Lu, Jiuwei;
Guo, Yiran;
Yin, Jiekai;
Chen, Jianbin;
Wang, Yinsheng;
Wang, Gang Greg;
Song, Jikui

Publication type:

Article

Are there specific readers of oxidized 5-methylcytosine bases?

Published in:

BioEssays, 2016, v. 38, n. 10, p. 1038, doi. 10.1002/bies.201600126

By:

Song, Jikui;
Pfeifer, Gerd P.

Publication type:

Article

Structures of two Arabidopsis thaliana major latex proteins represent novel helix-grip folds.

Published in:

Proteins, 2009, v. 76, n. 1, p. 237, doi. 10.1002/prot.22396

By:

Lytle, Betsy L.;
Song, Jikui;
de la Cruz, Norberto B.;
Peterson, Francis C.;
Johnson, Kenneth A.;
Bingman, Craig A.;
Phillips, George N.;
Volkman, Brian F.

Publication type:

Article

Bacterial Effector Activates Jasmonate Signaling by Directly Targeting JAZ Transcriptional Repressors.

Published in:

PLoS Pathogens, 2013, v. 9, n. 10, p. 1, doi. 10.1371/journal.ppat.1003715

By:

Jiang, Shushu;
Yao, Jian;
Ma, Ka-Wai;
Zhou, Huanbin;
Song, Jikui;
He, Sheng Yang;
Ma, Wenbo

Publication type:

Article

The structure of Zika virus NS5 reveals a conserved domain conformation.

Published in:

Nature Communications, 2017, v. 8, n. 3, p. 14763, doi. 10.1038/ncomms14763

By:

Wang, Boxiao;
Tan, Xiao-Feng;
Thurmond, Stephanie;
Zhang, Zhi-Min;
Lin, Asher;
Hai, Rong;
Song, Jikui

Publication type:

Article

A conformational selection mechanism of flavivirus NS5 for species-specific STAT2 inhibition.

Published in:

Communications Biology, 2024, v. 7, n. 1, p. 1, doi. 10.1038/s42003-024-05768-8

By:

Biswal, Mahamaya;
Yao, Wangyuan;
Lu, Jiuwei;
Chen, Jianbin;
Morrison, Juliet;
Hai, Rong;
Song, Jikui

Publication type:

Article

Structural basis for the allosteric regulation and dynamic assembly of DNMT3B.

Published in:

Nucleic Acids Research, 2023, v. 52, n. 22, p. 12476, doi. 10.1093/nar/gkad972

By:

Lu, Jiuwei;
Fang, Jian;
Zhu, Hongtao;
Liang, Kimberly Lu;
Khudaverdyan, Nelli;
Song, Jikui

Publication type:

Article

Two conserved oligomer interfaces of NSP7 and NSP8 underpin the dynamic assembly of SARS-CoV-2 RdRP.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 10, p. 5956, doi. 10.1093/nar/gkab370

By:

Biswal, Mahamaya;
Diggs, Stephen;
Xu, Duo;
Khudaverdyan, Nelli;
Lu, Jiuwei;
Fang, Jian;
Blaha, Gregor;
Hai, Rong;
Song, Jikui

Publication type:

Article

Complex DNA sequence readout mechanisms of the DNMT3B DNA methyltransferase.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 20, p. 11495, doi. 10.1093/nar/gkaa938

By:

Dukatz, Michael;
Adam, Sabrina;
Biswal, Mahamaya;
Song, Jikui;
Bashtrykov, Pavel;
Jeltsch, Albert

Publication type:

Article

A DNA aptamer for binding and inhibition of DNA methyltransferase 1.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 22, p. 11527, doi. 10.1093/nar/gkz1083

By:

Wang, Linlin;
Lee, Ju Yong;
Gao, Linfeng;
Yin, Jiekai;
Duan, Yaokai;
Jimenez, Luis A;
Adkins, Gary Brent;
Ren, Wendan;
Li, Linhui;
Fang, Jian;
Wang, Yinsheng;
Song, Jikui;
Zhong, Wenwan

Publication type:

Article

DNA sequence-dependent activity and base flipping mechanisms of DNMT1 regulate genome-wide DNA methylation.

Published in:

Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-020-17531-8

By:

Adam, Sabrina;
Anteneh, Hiwot;
Hornisch, Maximilian;
Wagner, Vincent;
Lu, Jiuwei;
Radde, Nicole E.;
Bashtrykov, Pavel;
Song, Jikui;
Jeltsch, Albert

Publication type:

Article

Comprehensive structure-function characterization of DNMT3B and DNMT3A reveals distinctive de novo DNA methylation mechanisms.

Published in:

Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-020-17109-4

By:

Gao, Linfeng;
Emperle, Max;
Guo, Yiran;
Grimm, Sara A.;
Ren, Wendan;
Adam, Sabrina;
Uryu, Hidetaka;
Zhang, Zhi-Min;
Chen, Dongliang;
Yin, Jiekai;
Dukatz, Michael;
Anteneh, Hiwot;
Jurkowska, Renata Z.;
Lu, Jiuwei;
Wang, Yinsheng;
Bashtrykov, Pavel;
Wade, Paul A.;
Wang, Gang Greg;
Jeltsch, Albert;
Song, Jikui

Publication type:

Article

Structural basis for impairment of DNA methylation by the DNMT3A R882H mutation.

Published in:

Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-020-16213-9

By:

Anteneh, Hiwot;
Fang, Jian;
Song, Jikui

Publication type:

Article

The BAH domain of ORC1 links H4K20me2 to DNA replication licensing and Meier-Gorlin syndrome.

Published in:

Nature, 2012, v. 484, n. 7392, p. 115, doi. 10.1038/nature10956

By:

Kuo, Alex J.;
Song, Jikui;
Cheung, Peggie;
Ishibe-Murakami, Satoko;
Yamazoe, Sayumi;
Chen, James K.;
Patel, Dinshaw J.;
Gozani, Or

Publication type:

Article

Haematopoietic malignancies caused by dysregulation of a chromatin-binding PHD finger.

Published in:

Nature, 2009, v. 459, n. 7248, p. 847, doi. 10.1038/nature08036

By:

Wang, Gang G.;
Jikui Song;
Zhanxin Wang;
Dormann, Holger L.;
Casadio, Fabio;
Haitao Li;
Jun-Li Luo;
Patel, Dinshaw J.;
Allis, C. David

Publication type:

Article

1H, 15N and 13C Resonance Assignments of the Putative Bet v 1 Family Protein At1g24000.1 from Arabidopsis Thaliana.

Published in:

Journal of Biomolecular NMR, 2005, v. 32, n. 4, p. 335, doi. 10.1007/s10858-005-8205-4

By:

Jikui Song;
Qin Zhao;
Lee, Min S.;
Markley, John L.

Publication type:

Article

Letter to the Editor: Solution structure of a calmodulin-like calcium-binding domain fromArabidopsis thaliana.

Published in:

Journal of Biomolecular NMR, 2004, v. 30, n. 4, p. 451, doi. 10.1007/s10858-004-5356-7

By:

Song, Jikui;
Zhao, Qin;
Thao, Sandy;
Frederick, Ronnie;
Markley, John L.

Publication type:

Article

Structure and regulation of ZCCHC4 in m6A-methylation of 28S rRNA.

Published in:

Nature Communications, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41467-019-12923-x

By:

Ren, Wendan;
Lu, Jiuwei;
Huang, Mengjiang;
Gao, Linfeng;
Li, Dongxu;
Wang, Gang Greg;
Song, Jikui

Publication type:

Article

Structure and regulation of ZCCHC4 in m6A-methylation of 28S rRNA.

Published in:

Nature Communications, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41467-019-12923-x

By:

Ren, Wendan;
Lu, Jiuwei;
Huang, Mengjiang;
Gao, Linfeng;
Li, Dongxu;
Greg Wang, Gang;
Song, Jikui

Publication type:

Article

Structure and function of Zika virus NS5 protein: perspectives for drug design.

Published in:

Cellular & Molecular Life Sciences, 2018, v. 75, n. 10, p. 1723, doi. 10.1007/s00018-018-2751-x

By:

Wang, Boxiao;
Thurmond, Stephanie;
Hai, Rong;
Song, Jikui

Publication type:

Article

BS69/ZMYND11 C-Terminal Domains Bind and Inhibit EBNA2.

Published in:

PLoS Pathogens, 2016, v. 12, n. 2, p. 1, doi. 10.1371/journal.ppat.1005414

By:

Harter, Matthew R.;
Liu, Cheng-Der;
Shen, Chih-Lung;
Gonzalez-Hurtado, Elsie;
Zhang, Zhi-Min;
Xu, Muyu;
Martinez, Ernest;
Peng, Chih-Wen;
Song, Jikui

Publication type:

Article

Works by Song, Jikui

BAHCC1 binds H4K20me1 to facilitate the MCM complex loading and DNA replication.

Multi-layered heterochromatin interaction as a switch for DIM2-mediated DNA methylation.

Suppression of Type I Interferon Signaling by Flavivirus NS5.

The role of substrate deformation in context‐dependent non‐CG DNA methylation.

Comparison of cell-based and cell-free protocols for producing target proteins from the Arabidopsis thaliana genome for structural studies.

Structural Basis of DNMT1 and DNMT3A-Mediated DNA Methylation.

Structure of DNMT3B homo-oligomer reveals vulnerability to impairment by ICF mutations.

Mechanistic basis for maintenance of CHG DNA methylation in plants.

Structural basis for the ORC1‐Cyclin A association.

Solution structure of human sorting nexin 22.

Solution structure of At3g04780.1-des15, an Arabidopsis thaliana ortholog of the C-terminal domain of human thioredoxin-like protein.

Two serine residues in Pseudomonas syringae effector HopZ1a are required for acetyltransferase activity and association with the host co-factor.

Structure-guided functional suppression of AML-associated DNMT3A hotspot mutations.

Are there specific readers of oxidized 5-methylcytosine bases?

Structures of two Arabidopsis thaliana major latex proteins represent novel helix-grip folds.

Bacterial Effector Activates Jasmonate Signaling by Directly Targeting JAZ Transcriptional Repressors.

The structure of Zika virus NS5 reveals a conserved domain conformation.

A conformational selection mechanism of flavivirus NS5 for species-specific STAT2 inhibition.

Structural basis for the allosteric regulation and dynamic assembly of DNMT3B.

Two conserved oligomer interfaces of NSP7 and NSP8 underpin the dynamic assembly of SARS-CoV-2 RdRP.

Complex DNA sequence readout mechanisms of the DNMT3B DNA methyltransferase.

A DNA aptamer for binding and inhibition of DNA methyltransferase 1.

DNA sequence-dependent activity and base flipping mechanisms of DNMT1 regulate genome-wide DNA methylation.

Comprehensive structure-function characterization of DNMT3B and DNMT3A reveals distinctive de novo DNA methylation mechanisms.

Structural basis for impairment of DNA methylation by the DNMT3A R882H mutation.

The BAH domain of ORC1 links H4K20me2 to DNA replication licensing and Meier-Gorlin syndrome.

Haematopoietic malignancies caused by dysregulation of a chromatin-binding PHD finger.

<sup>1</sup>H, <sup>15</sup>N and <sup>13</sup>C Resonance Assignments of the Putative Bet v 1 Family Protein At1g24000.1 from Arabidopsis Thaliana.

Letter to the Editor: Solution structure of a calmodulin-like calcium-binding domain fromArabidopsis thaliana.

Structure and regulation of ZCCHC4 in m<sup>6</sup>A-methylation of 28S rRNA.

Structure and regulation of ZCCHC4 in m<sup>6</sup>A-methylation of 28S rRNA.

Structure and function of Zika virus NS5 protein: perspectives for drug design.

BS69/ZMYND11 C-Terminal Domains Bind and Inhibit EBNA2.