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Identification and Removal of Contaminant Sequences From Ribosomal Gene Databases: Lessons From the Census of Deep Life.
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- Frontiers in Microbiology, 2018, p. 1, doi. 10.3389/fmicb.2018.00840
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- Article
Seasonal Succession and Spatial Patterns of Synechococcus Microdiversity in a Salt Marsh Estuary Revealed through 16S rRNA Gene Oligotyping.
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- Frontiers in Microbiology, 2017, p. 1, doi. 10.3389/fmicb.2017.01496
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Editorial: New Insights into Microbial Ecology through Subtle Nucleotide Variation.
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- Frontiers in Microbiology, 2016, p. 1, doi. 10.3389/fmicb.2016.01318
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- Article
Analysis of Lung Microbiota in Bronchoalveolar Lavage, Protected Brush and Sputum Samples from Subjects with Mild-To-Moderate Cystic Fibrosis Lung Disease.
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- PLoS ONE, 2016, v. 11, n. 3, p. 1, doi. 10.1371/journal.pone.0149998
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- Article
Association of Cesarean Delivery and Formula Supplementation With the Intestinal Microbiome of 6-Week-Old Infants.
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- JAMA Pediatrics, 2016, v. 170, n. 3, p. 212, doi. 10.1001/jamapediatrics.2015.3732
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- Article
Minimum entropy decomposition: Unsupervised oligotyping for sensitive partitioning of high-throughput marker gene sequences.
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- ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2015, v. 9, n. 4, p. 968, doi. 10.1038/ismej.2014.195
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- Article
A single genus in the gut microbiome reflects host preference and specificity.
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- ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2015, v. 9, n. 1, p. 90, doi. 10.1038/ismej.2014.97
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- Article
Evolutionary Strategies of Viruses, Bacteria and Archaea in Hydrothermal Vent Ecosystems Revealed through Metagenomics.
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- PLoS ONE, 2014, v. 9, n. 10, p. 1, doi. 10.1371/journal.pone.0109696
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- Article
DRISEE overestimates errors in metagenomic sequencing data.
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- Briefings in Bioinformatics, 2014, v. 15, n. 5, p. 783, doi. 10.1093/bib/bbt010
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Host-specificity among abundant and rare taxa in the sponge microbiome.
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- ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2014, v. 8, n. 6, p. 1198, doi. 10.1038/ismej.2013.227
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- Article
Comparison of Bacterial Communities in Sands and Water at Beaches with Bacterial Water Quality Violations.
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- PLoS ONE, 2014, v. 9, n. 3, p. 1, doi. 10.1371/journal.pone.0090815
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- Article
VAMPS: a website for visualization and analysis of microbial population structures.
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- BMC Bioinformatics, 2014, v. 15, n. 1, p. 2, doi. 10.1186/1471-2105-15-41
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- Article
Oligotyping: differentiating between closely related microbial taxa using 16S rRNA gene data.
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- Methods in Ecology & Evolution, 2013, v. 4, n. 12, p. 1111, doi. 10.1111/2041-210X.12114
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- Article
Shifts in the Microbial Community Composition of Gulf Coast Beaches Following Beach Oiling.
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- PLoS ONE, 2013, v. 8, n. 9, p. 1, doi. 10.1371/journal.pone.0074265
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- Article
Sewage reflects the distribution of human faecal Lachnospiraceae.
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- Environmental Microbiology, 2013, v. 15, n. 8, p. 2213, doi. 10.1111/1462-2920.12092
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- Article
A Filtering Method to Generate High Quality Short Reads Using Illumina Paired-End Technology.
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- PLoS ONE, 2013, v. 8, n. 6, p. 1, doi. 10.1371/journal.pone.0066643
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- Article
Macroecological patterns of marine bacteria on a global scale.
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- Journal of Biogeography, 2013, v. 40, n. 4, p. 800, doi. 10.1111/jbi.12034
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- Article
Salt marsh sediment diversity: a test of the variability of the rare biosphere among environmental replicates.
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- ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2012, v. 6, n. 11, p. 2014, doi. 10.1038/ismej.2012.47
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- Article
Global distribution and diversity of marine Verrucomicrobia.
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- ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2012, v. 6, n. 8, p. 1499, doi. 10.1038/ismej.2012.3
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- Article
Diversity and dynamics of rare and of resident bacterial populations in coastal sands.
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- ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2012, v. 6, n. 3, p. 542, doi. 10.1038/ismej.2011.132
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- Article
Microbial community composition in sediments resists perturbation by nutrient enrichment.
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- ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2011, v. 5, n. 9, p. 1540, doi. 10.1038/ismej.2011.22
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- Article
Water mass-specificity of bacterial communities in the North Atlantic revealed by massively parallel sequencing.
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- Molecular Ecology, 2011, v. 20, n. 2, p. 258, doi. 10.1111/j.1365-294X.2010.04932.x
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- Article
Broadly Sampled Multigene Analyses Yield a Well-Resolved Eukaryotic Tree of Life.
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- Systematic Biology, 2010, v. 59, n. 5, p. 518, doi. 10.1093/sysbio/syq037
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Ironing out the wrinkles in the rare biosphere through improved OTU clustering.
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- Environmental Microbiology, 2010, v. 12, n. 7, p. 1889, doi. 10.1111/j.1462-2920.2010.02193.x
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Multiple scales of diversification within natural populations of archaea in hydrothermal chimney biofilms.
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- Environmental Microbiology Reports, 2010, v. 2, n. 2, p. 236, doi. 10.1111/j.1758-2229.2009.00097.x
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Comparative community genomics in the Dead Sea: an increasingly extreme environment.
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- ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2010, v. 4, n. 3, p. 399, doi. 10.1038/ismej.2009.141
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- Article
Genetic Exchange Within and Between Assemblages of Giardia duodenalis.
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- Journal of Eukaryotic Microbiology, 2009, v. 56, n. 6, p. 504, doi. 10.1111/j.1550-7408.2009.00443.x
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Effect of PCR amplicon size on assessments of clone library microbial diversity and community structure.
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- Environmental Microbiology, 2009, v. 11, n. 5, p. 1292, doi. 10.1111/j.1462-2920.2008.01857.x
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- Article
A core gut microbiome in obese and lean twins.
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- 2009
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- Letter
The Pervasive Effects of an Antibiotic on the Human Gut Microbiota, as Revealed by Deep 16S rRNA Sequencing.
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- PLoS Biology, 2008, v. 6, n. 11, p. e280, doi. 10.1371/journal.pbio.0060280
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- Article
Exploring Microbial Diversity and Taxonomy Using SSU rRNA Hypervariable Tag Sequencing.
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- PLoS Genetics, 2008, v. 4, n. 11, p. 1, doi. 10.1371/journal.pgen.1000255
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- Article
Abundance and diversity of microbial life in ocean crust.
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- 2008
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- Letter
Molecular characterization of sulfate-reducing bacteria in a New England salt marsh.
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- Environmental Microbiology, 2005, v. 7, n. 8, p. 1175, doi. 10.1111/j.1462-2920.2005.00796.x
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- Article
Serial analysis of V6 ribosomal sequence tags (SARST-V6): a method for efficient, high-throughput analysis of microbial community composition.
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- Environmental Microbiology, 2005, v. 7, n. 3, p. 356, doi. 10.1111/j.1462-2920.2004.00712.x
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- Article
Phylogeny of Opisthokonta and the evolution of multicellularity and complexity in Fungi and Metazoa.
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- International Journal of Astrobiology, 2003, v. 2, n. 3, p. 203, doi. 10.1017/s1473550403001551
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- Article
Two New Small-Subunit Ribosomal RNA Gene Lineages within the Subclass Gymnamoebia.
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- Journal of Eukaryotic Microbiology, 2003, v. 50, n. 3, p. 224, doi. 10.1111/j.1550-7408.2003.tb00122.x
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- Article
Eukaryotic diversity in Spain's river of Fire.
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- Nature, 2002, v. 417, n. 6885, p. 137, doi. 10.1038/417137a
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- Article
Evolutionary History of “Early-Diverging” Eukaryotes: The Excavate Taxon Carpediemonas is a Close Relative of Giardia1.
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- Molecular Biology & Evolution, 2002, v. 19, n. 10, p. 1782, doi. 10.1093/oxfordjournals.molbev.a004000
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- Article
Pelobionts are Degenerate Protists: Insights from Molecules and Morphology1.
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- Molecular Biology & Evolution, 2002, v. 19, n. 6, p. 978, doi. 10.1093/oxfordjournals.molbev.a004157
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- Article
Phylogenetic Position of the Trichomonad Parasite of Turkeys, Histomonas meleagridis (Smith) Tyzzer, Inferred from Small Subunit rRNA Sequence.
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- Journal of Eukaryotic Microbiology, 2001, v. 48, n. 4, p. 498, doi. 10.1111/j.1550-7408.2001.tb00185.x
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- Article
The Nucleariid Amoebae: More Protists at the Animal-Fungal Boundary.
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- Journal of Eukaryotic Microbiology, 2001, v. 48, n. 3, p. 293, doi. 10.1111/j.1550-7408.2001.tb00317.x
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- Article
Phylogenetic characterization of epibiotic bacteria in the accessory nidamental gland and egg....
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- Environmental Microbiology, 2001, v. 3, n. 3, p. 151, doi. 10.1046/j.1462-2920.2001.00172.x
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- Article
The Evolutionary Origins of Eukaryotic Protein Disulfide Isomerase Domains: New Evidence from the Amitochondriate Protist Giardia lamblia.
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- Molecular Biology & Evolution, 2001, v. 18, n. 8, p. 1455, doi. 10.1093/oxfordjournals.molbev.a003931
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- Article
Phylogenetic Relationships of Class II Fumarase Genes from Trichomonad Species.
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- Molecular Biology & Evolution, 2001, v. 18, n. 8, p. 1574, doi. 10.1093/oxfordjournals.molbev.a003944
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- Article
Evolutionary Relationships Among “Jakobid” Flagellates as Indicated by Alpha- and Beta-Tubulin Phylogenies.
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- Molecular Biology & Evolution, 2001, v. 18, n. 4, p. 514, doi. 10.1093/oxfordjournals.molbev.a003830
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- Article
Giardia lamblia Expresses a Proteobacterial-like DnaK Homolog.
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- Molecular Biology & Evolution, 2001, v. 18, n. 4, p. 530, doi. 10.1093/oxfordjournals.molbev.a003832
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Phylogenomic Analysis of the α Proteasome Gene Family from Early-Diverging Eukaryotes.
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- Journal of Molecular Evolution, 2000, v. 51, n. 6, p. 532, doi. 10.1007/s002390010117
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- Article
Core Histones of the Amitochondriate Protist, Giardia lamblia.
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- Molecular Biology & Evolution, 2000, v. 17, n. 8, p. 1156, doi. 10.1093/oxfordjournals.molbev.a026398
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- Article
Molecular Phytogeny of Parabasalids Based on Small Subunit rRNA Sequences, with Emphasis on the Trichomonadinae Subfamily.
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- Journal of Eukaryotic Microbiology, 2000, v. 47, n. 1, p. 70, doi. 10.1111/j.1550-7408.2000.tb00013.x
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Insights into the Evolution of Nuclear Dualism in the Ciliates Revealed by Phylogenetic Analysis of rRNA Sequences.
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- Journal of Eukaryotic Microbiology, 1996, v. 43, n. 3, p. 225, doi. 10.1111/j.1550-7408.1996.tb01396.x
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- Article