Works by Sode, Koji

Results: 119

An Aptamer-Based Bound/Free Separation System for Protein Detection.

Published in:

Electroanalysis, 2009, v. 21, n. 11, p. 1297, doi. 10.1002/elan.200804555

By:

Fukasawa, Mieko;
Yoshida, Wataru;
Yamazaki, Hiroki;
Sode, Koji;
Ikebukuro, Kazunori

Publication type:

Article

DNA Aptamers that Bind to PQQGDH as an Electrochemical Labeling Tool.

Published in:

Electroanalysis, 2009, v. 21, n. 11, p. 1303, doi. 10.1002/elan.200804559

By:

Osawa, Yuko;
Takase, Madoka;
Sode, Koji;
Ikebukuro, Kazunori

Publication type:

Article

Klaus Mosbach tribute.

Published in:

2015

By:

Clark, Douglas S.;
Karube, Isao;
Sode, Koji;
Bülow, Leif;
Brüggemann, Oliver;
Lowe, Christopher R.;
Poulsen, Poul Børge;
Langer, Robert S.

Publication type:

Editorial

Simultaneous improvement of specificity and affinity of aptamers against Streptococcus mutans by in silico maturation for biosensor development.

Published in:

Biotechnology & Bioengineering, 2014, v. 111, n. 3, p. 454, doi. 10.1002/bit.25111

By:

Savory, Nasa;
Takahashi, Yayoi;
Tsukakoshi, Kaori;
Hasegawa, Hijiri;
Takase, Madoka;
Abe, Koichi;
Yoshida, Wataru;
Ferri, Stefano;
Kumazawa, Shizuko;
Sode, Koji;
Ikebukuro, Kazunori

Publication type:

Article

Construction of a novel glucose-sensing molecule based on a substrate-binding protein for intracellular sensing.

Published in:

Biotechnology & Bioengineering, 2011, v. 108, n. 4, p. 725, doi. 10.1002/bit.23006

By:

Sakaguchi-Mikami, Akane;
Taniguchi, Akiyoshi;
Sode, Koji;
Yamazaki, Tomohiko

Publication type:

Article

Motif-based search for a novel fructosyl peptide oxidase from genome databases.

Published in:

Biotechnology & Bioengineering, 2010, v. 106, n. 3, p. 358, doi. 10.1002/bit.22710

By:

Kim, Seungsu;
Ferri, Stefano;
Tsugawa, Wakako;
Mori, Kazushige;
Sode, Koji

Publication type:

Article

Study of the role of anaerobic metabolism in succinate production by Enterobacter aerogenes.

Published in:

Applied Microbiology & Biotechnology, 2014, v. 98, n. 18, p. 7803, doi. 10.1007/s00253-014-5884-3

By:

Tajima, Yoshinori;
Kaida, Kenichi;
Hayakawa, Atsushi;
Fukui, Keita;
Nishio, Yousuke;
Hashiguchi, Kenichi;
Fudou, Ryosuke;
Matsui, Kazuhiko;
Usuda, Yoshihiro;
Sode, Koji

Publication type:

Article

Characterization of Electron Mediator Preference of Aerococcus viridans-Derived Lactate Oxidase for Use in Disposable Enzyme Sensor Strips.

Published in:

Sensors & Materials, 2017, v. 29, n. 12, p. 1703, doi. 10.18494/SAM.2017.1731

By:

Noya Loew;
Maya Fitriana;
Kentaro Hiraka;
Koji Sode;
Wakako Tsugawa

Publication type:

Article

Development of an Electrochemical Adenosine Diphosphate (ADP) Sensing Principle Employing ADP-dependent Kinase.

Published in:

Sensors & Materials, 2015, v. 27, n. 9, p. 839

By:

Wakako Tsugawa;
Hinako Futagami;
Koji Sode

Publication type:

Article

The molecular reaction vessels for a transesterification process created by molecular imprinting technique.

Published in:

Journal of Molecular Recognition, 2005, v. 18, n. 3, p. 262, doi. 10.1002/jmr.732

By:

Meng, Zihui;
Sode, Koji

Publication type:

Article

X‐ray structure of the direct electron transfer‐type FAD glucose dehydrogenase catalytic subunit complexed with a hitchhiker protein.

Published in:

Acta Crystallographica: Section D, Structural Biology, 2019, v. 75, n. 9, p. 841, doi. 10.1107/S2059798319010878

By:

Yoshida, Hiromi;
Kojima, Katsuhiro;
Shiota, Masaki;
Yoshimatsu, Keiichi;
Yamazaki, Tomohiko;
Ferri, Stefano;
Tsugawa, Wakako;
Kamitori, Shigehiro;
Sode, Koji

Publication type:

Article

A Thiol-reactive Phenazine Ethosulfate - A Novel Redox Mediator for Quasi-direct Electron-transfer-type Sensors.

Published in:

Sensors & Materials, 2022, v. 34, n. 6, Part 2, p. 2105, doi. 10.18494/SAM3898

By:

Maya Fitriana;
Kentaro Hiraka;
Kazunori Ikebukuro;
Koji Sode;
Wakako Tsugawa

Publication type:

Article

The simple and rapid detection of specific PCR products from bacterial genomes using Zn finger proteins.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 11, p. e68, doi. 10.1093/nar/gkn274

By:

Osawa, Yuko;
Ikebukuro, Kazunori;
Motoki, Hiroaki;
Matsuo, Takafumi;
Horiuchi, Michio;
Sode, Koji

Publication type:

Article

Improving the induction fold of riboregulators for cyanobacteria.

Published in:

RNA Biology, 2018, v. 15, n. 3, p. 353, doi. 10.1080/15476286.2017.1422470

By:

Sakamoto, Ippei;
Abe, Koichi;
Kawai, Sumiya;
Tsukakoshi, Kaori;
Sakai, Yuta;
Sode, Koji;
Ikebukuro, Kazunori

Publication type:

Article

W-motif Exchange Between β-Propeller Proteins.

Published in:

Protein Journal, 2007, v. 26, n. 3, p. 153, doi. 10.1007/s10930-006-9056-x

By:

Atsushi Tachino;
Satoshi Igarashi;
Koji Sode

Publication type:

Article

Engineering Fructosyl Peptide Oxidase to Improve Activity Toward the Fructosyl Hexapeptide Standard for HbA1c Measurement.

Published in:

Molecular Biotechnology, 2013, v. 54, n. 3, p. 939, doi. 10.1007/s12033-012-9644-2

By:

Ferri, Stefano;
Miyamoto, Yusuke;
Sakaguchi-Mikami, Akane;
Tsugawa, Wakako;
Sode, Koji

Publication type:

Article

Stabilization of quaternary structure of water-soluble quinoprotein glucose dehydrogenase.

Published in:

Molecular Biotechnology, 2003, v. 24, n. 2, p. 97, doi. 10.1385/MB:24:2:97

By:

Igarashi, Satoshi;
Sode, Koji

Publication type:

Article

Purification of a marine bacterial glucose dehydrogenase from Cytophaga marinoflava and its application for measurement of 1,5-anhydro-d-glucitol.

Published in:

Molecular Biotechnology, 1996, v. 56, n. 3, p. 301, doi. 10.1007/BF02786960

By:

Tsugawa, Wakako;
Horiuchi, Shuichi;
Tanaka, Mitsuharu;
Wake, Hitoshi;
Sode, Koji

Publication type:

Article

Clinical application of the serum 1,5-anhydroglucitol assay method using glucose 3-dehydrogenase.

Published in:

2002

By:

Hamafuji, Tetsuro;
Tsugawa, Wakako;
Sode, Koji

Publication type:

journal article

Construction of Engineered Water-soluble PQQ Glucose Dehydrogenase with Improved Substrate Specificity.

Published in:

Biocatalysis & Biotransformation, 2002, v. 20, n. 6, p. 405, doi. 10.1080/1024242021000058694

By:

Sode, Koji;
Igarashi, Satoshi;
Morimoto, Akifumi;
Yoshida, Hiromi

Publication type:

Article

Engineering of a green-light inducible gene expression system in Synechocystis sp. PCC6803.

Published in:

Microbial Biotechnology, 2014, v. 7, n. 2, p. 177, doi. 10.1111/1751-7915.12098

By:

Koichi Abe;
Kotone Miyake;
Mayumi Nakamura;
Katsuhiro Kojima;
Ferri, Stefano;
Kazunori Ikebukuro;
Koji Sode

Publication type:

Article

The inhibitory effect of pyrroloquinoline quinone on the amyloid formation and cytotoxicity of truncated alpha-synuclein.

Published in:

Molecular Neurodegeneration, 2010, v. 5, p. 20, doi. 10.1186/1750-1326-5-20

By:

Kim, Jihoon;
Harada, Ryuichi;
Kobayashi, Masaki;
Kobayashi, Natsuki;
Sode, Koji

Publication type:

Article

Rapid and Convenient Single-Chain Variable Fragment-Employed Electrochemical C-Reactive Protein Detection System.

Published in:

International Journal of Molecular Sciences, 2024, v. 25, n. 5, p. 2859, doi. 10.3390/ijms25052859

By:

Miura, Daimei;
Motohashi, Saki;
Goto, Ayaka;
Kimura, Hayato;
Tsugawa, Wakako;
Sode, Koji;
Ikebukuro, Kazunori;
Asano, Ryutaro

Publication type:

Article

Development of an Anti-Idiotype Aptamer-Based Electrochemical Sensor for a Humanized Therapeutic Antibody Monitoring.

Published in:

International Journal of Molecular Sciences, 2023, v. 24, n. 6, p. 5277, doi. 10.3390/ijms24065277

By:

Nagata, Madoka;
Lee, Jinhee;
Saito, Taro;
Ikebukuro, Kazunori;
Sode, Koji

Publication type:

Article

Development of a Versatile Method to Construct Direct Electron Transfer-Type Enzyme Complexes Employing SpyCatcher/SpyTag System.

Published in:

International Journal of Molecular Sciences, 2023, v. 24, n. 3, p. 1837, doi. 10.3390/ijms24031837

By:

Yanase, Takumi;
Okuda-Shimazaki, Junko;
Asano, Ryutaro;
Ikebukuro, Kazunori;
Sode, Koji;
Tsugawa, Wakako

Publication type:

Article

Alteration of Electron Acceptor Preferences in the Oxidative Half-Reaction of Flavin-Dependent Oxidases and Dehydrogenases.

Published in:

International Journal of Molecular Sciences, 2020, v. 21, n. 11, p. 3797, doi. 10.3390/ijms21113797

By:

Hiraka, Kentaro;
Tsugawa, Wakako;
Sode, Koji

Publication type:

Article

Engineered Glucose Oxidase Capable of Quasi-Direct Electron Transfer after a Quick-and-Easy Modification with a Mediator.

Published in:

International Journal of Molecular Sciences, 2020, v. 21, n. 3, p. 1137, doi. 10.3390/ijms21031137

By:

Suzuki, Nanami;
Lee, Jinhee;
Loew, Noya;
Takahashi-Inose, Yuka;
Okuda-Shimazaki, Junko;
Kojima, Katsuhiro;
Mori, Kazushige;
Tsugawa, Wakako;
Sode, Koji

Publication type:

Article

Mutagenesis Study of the Cytochrome c Subunit Responsible for the Direct Electron Transfer-Type Catalytic Activity of FAD-Dependent Glucose Dehydrogenase.

Published in:

International Journal of Molecular Sciences, 2018, v. 19, n. 4, p. 931, doi. 10.3390/ijms19040931

By:

Yuki Yamashita;
Nanoha Suzuki;
Nana Hirose;
Katsuhiro Kojima;
Wakako Tsugawa;
Koji Sode

Publication type:

Article

Screening of Peptide Ligands for Pyrroloquinoline Quinone Glucose Dehydrogenase Using Antagonistic Template-Based Biopanning.

Published in:

International Journal of Molecular Sciences, 2013, v. 14, n. 12, p. 23244, doi. 10.3390/ijms141223244

By:

Abe, Koichi;
Yoshida, Wataru;
Terada, Kotaro;
Yagi-Ishii, Yukiko;
Ferri, Stefano;
Ikebukuro, Kazunori;
Sode, Koji

Publication type:

Article

Partial Peptide of a-Synuclein Modified with Small-Molecule Inhibitors Specifically Inhibits Amyloid Fibrillation of a-Synuclein.

Published in:

International Journal of Molecular Sciences, 2013, v. 14, n. 2, p. 2590, doi. 10.3390/ijms14022590

By:

Yoshida, Wataru;
Kobayashi, Natsuki;
Sasaki, Yasuhiko;
Ikebukuro, Kazunori;
Sode, Koji

Publication type:

Article

Construction of Mutant Glucose Oxidases with Increased Dye-Mediated Dehydrogenase Activity.

Published in:

International Journal of Molecular Sciences, 2012, v. 13, n. 11, p. 14149, doi. 10.3390/ijms131114149

By:

Horaguchi, Yohei;
Saito, Shoko;
Kojima, Katsuhiro;
Tsugawa, Wakako;
Ferri, Stefano;
Sode, Koji

Publication type:

Article

Integrated Microbiosensors for Medical Use.

Published in:

Annals of the New York Academy of Sciences, 1988, v. 542, n. 1, p. 470, doi. 10.1111/j.1749-6632.1988.tb25874.x

By:

KARUBE, ISAO;
TAMIYA, EIICHI;
SODE, KOJI;
YOKOYAMA, KENJI;
SUZUKI, HIROAKI;
HATTORI, SHINJI

Publication type:

Article

In-vivo continuous monitoring with biosensors based on engineered biological recognition elements: opportunities and challenges.

Published in:

Frontiers in Sensors (2673-5067), 2025, p. 1, doi. 10.3389/fsens.2025.1579359

By:

Nagata, Madoka;
Sode, Koji

Publication type:

Article

Structural Basis of Efficient Electron Transport between Photosynthetic Membrane Proteins and Plastocyanin in Spinach Revealed Using Nuclear Magnetic Resonance.

Published in:

Plant Cell, 2012, v. 24, n. 10, p. 4173, doi. 10.1105/tpc.112.102517

By:

Ueda, Takumi;
Nomoto, Naoko;
Koga, Masamichi;
Ogasa, Hiroki;
Ogawa, Yuuta;
Matsumoto, Masahiko;
Stampoulis, Pavlos;
Sode, Koji;
Terasawa, Hiroaki;
Shimada, Ichio

Publication type:

Article

Increasing the hydrophobic interaction between terminal W-motifs enhances the stability of Salmonella typhimurium sialidase. A general strategy for the stabilization of β-propeller protein fold.

Published in:

Protein Engineering, 2001, v. 14, n. 11, p. 891, doi. 10.1093/protein/14.11.891

By:

Witarto, Arief Budi;
Sode, Koji

Publication type:

Article

Discovery of periplasmic solute binding proteins with specificity for ketone bodies: β‐hydroxybutyrate binding proteins.

Published in:

Protein Science: A Publication of the Protein Society, 2024, v. 33, n. 7, p. 1, doi. 10.1002/pro.5025

By:

Kane, Bryant J.;
Okuda‐Shimazaki, Junko;
Andrews, Madelyn M.;
Kerrigan, Joseph A.;
Murphy, Kyle V.;
Sode, Koji

Publication type:

Article

Structure of lactate oxidase from Enterococcus hirae revealed new aspects of active site loop function: Product‐inhibition mechanism and oxygen gatekeeper.

Published in:

Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 10, p. 1, doi. 10.1002/pro.4434

By:

Hiraka, Kentaro;
Yoshida, Hiromi;
Tsugawa, Wakako;
Asano, Ryutaro;
La Belle, Jeffrey T.;
Ikebukuro, Kazunori;
Sode, Koji

Publication type:

Article

Light-induced production of isobutanol and 3-methyl-1-butanol by metabolically engineered cyanobacteria.

Published in:

Microbial Cell Factories, 2022, v. 21, n. 1, p. 1, doi. 10.1186/s12934-021-01732-x

By:

Kobayashi, Shunichi;
Atsumi, Shota;
Ikebukuro, Kazunori;
Sode, Koji;
Asano, Ryutaro

Publication type:

Article

Artificial complementary chromatic acclimation gene expression system in Escherichia coli.

Published in:

Microbial Cell Factories, 2021, v. 20, n. 1, p. 1, doi. 10.1186/s12934-021-01621-3

By:

Ariyanti, Dwi;
Ikebukuro, Kazunori;
Sode, Koji

Publication type:

Article

Untitled.

Published in:

Analytical & Bioanalytical Chemistry, 2002, v. 373, n. 4/5, p. 211, doi. 10.1007/s00216-002-1319-6

By:

Ogawa, Kinuko;
Stöllner, Daniela;
Scheller, Frieder;
Warsinke, Axel;
Ishimura, Fumimasa;
Tsugawa, Wakako;
Ferri, Stefano;
Sode, Koji

Publication type:

Article

Amperometric determination of free fatty acids by utilizing five sequential enzyme reactions.

Published in:

Electroanalysis, 1989, v. 1, n. 1, p. 69, doi. 10.1002/elan.1140010111

By:

Sode, Koji;
Tamiya, Eiichi;
Karube, Isao;
Kameda, Yuko

Publication type:

Article

Subzero temperature operating biosensor utilizing an organic solvent and quinoprotein glucose dehydrogenase.

Published in:

Biotechnology & Bioengineering, 1993, v. 42, n. 2, p. 251, doi. 10.1002/bit.260420214

By:

Sode, Koji;
Nakasono, Satoshi;
Tanaka, Mitsuharu;
Matsunaga, Tadashi

Publication type:

Article

Rapid determination of plasmid-carrying yeast cells by using an imaging sensor system.

Published in:

Biotechnology & Bioengineering, 1991, v. 38, n. 11, p. 1331, doi. 10.1002/bit.260381111

By:

Endo, Hideaki;
Suzuki, Masayasu;
Sode, Koji;
Tamiya, Eiichi;
Karube, Isao

Publication type:

Article

On-line monitoring of the viscosity in dextran fermentation using piezoelectric quartz crystal.

Published in:

Biotechnology & Bioengineering, 1990, v. 36, n. 6, p. 636, doi. 10.1002/bit.260360612

By:

Endo, Hideaki;
Sode, Koji;
Karube, Isao;
Muramatsu, Hiroshi

Publication type:

Article

Air-bubbling, hollow-fiber reactor with cell bleeding and cross-flow filtration.

Published in:

Biotechnology & Bioengineering, 1990, v. 35, n. 11, p. 1155, doi. 10.1002/bit.260351112

By:

Nishii, Kunio;
Sode, Koji;
Karube, Isao

Publication type:

Article

Microbial conversion of β-ionone by immobilized Aspergillus niger in the presence of an organic solvent.

Published in:

Biotechnology & Bioengineering, 1989, v. 33, n. 9, p. 1191, doi. 10.1002/bit.260330915

By:

Sode, Koji;
Karube, Isao;
Araki, Reiko;
Mikami, Yoichi

Publication type:

Article

Continuous hydrogen evolution by immobilized recombinant E. coli using a bioreactor.

Published in:

Biotechnology & Bioengineering, 1988, v. 32, n. 3, p. 396, doi. 10.1002/bit.260320321

By:

Kanayama, Hisanori;
Sode, Koji;
Karube, Isao

Publication type:

Article

Scaffold-fused riboregulators for enhanced gene activation in Synechocystis sp. PCC 6803.

Published in:

MicrobiologyOpen, 2015, v. 4, n. 4, p. 533, doi. 10.1002/mbo3.257

By:

Sakai, Yuta;
Abe, Koichi;
Nakashima, Saki;
Ellinger, James J.;
Ferri, Stefano;
Sode, Koji;
Ikebukuro, Kazunori

Publication type:

Article

Fluorescence resonance energy transfer from pyrene to perylene labels for nucleic acid hybridization assays under homogeneous solution conditions.

Published in:

Nucleic Acids Research, 2000, v. 28, n. 8, p. e34, doi. 10.1093/nar/28.8.e34

By:

Masuko, Masayuki;
Ohuchi, Shohkichi;
Sode, Koji;
Ohtani, Hiroyuki;
Shimadzu, Akira

Publication type:

Article

Development of a light-regulated cell-recovery system for non-photosynthetic bacteria.

Published in:

Microbial Cell Factories, 2016, v. 15, p. 1, doi. 10.1186/s12934-016-0426-6

By:

Mitsuharu Nakajima;
Koichi Abe;
Ferri, Stefano;
Koji Sode

Publication type:

Article