Works by Snoeyink, Jack

Results: 18

MolProbity: all-atom contacts and structure validation for proteins and nucleic acids.

Published in:

Nucleic Acids Research, 2007, v. 35, n. suppl_2, p. W375, doi. 10.1093/nar/gkm216

By:

Davis, Ian W.;
Leaver-Fay, Andrew;
Chen, Vincent B.;
Block, Jeremy N.;
Kapral, Gary J.;
Wang, Xueyi;
Murray, Laura W.;
Arendall, W. Bryan;
Snoeyink, Jack;
Richardson, Jane S.;
Richardson, David C.

Publication type:

Article

Lossless Compression of Floating-Point Geometry.

Published in:

Computer-Aided Design & Applications, 2004, v. 1, n. 1-4, p. 495, doi. 10.1080/16864360.2004.10738292

By:

Isenburg, Martin;
Lindstrom, Peter;
Snoeyink, Jack

Publication type:

Article

RNABC: forward kinematics to reduce all-atom steric clashes in RNA backbone.

Published in:

Journal of Mathematical Biology, 2008, v. 56, n. 1/2, p. 253

By:

Xueyi Wang;
Gary Kapral;
Laura Murray;
David Richardson;
Jane Richardson;
Jack Snoeyink

Publication type:

Article

Identification of family-specific residue packing motifs and their use for structure-based protein function prediction: I. Method development.

Published in:

Journal of Computer-Aided Molecular Design, 2009, v. 23, n. 11, p. 773, doi. 10.1007/s10822-009-9273-4

By:

Bandyopadhyay, Deepak;
Jun Huan;
Prins, Jan;
Snoeyink, Jack;
Wei Wang;
Tropsha, Alexander

Publication type:

Article

Identification of family-specific residue packing motifs and their use for structure-based protein function prediction: II. Case studies and applications.

Published in:

Journal of Computer-Aided Molecular Design, 2009, v. 23, n. 11, p. 785, doi. 10.1007/s10822-009-9277-0

By:

Bandyopadhyay, Deepak;
Jun Huan;
Prins, Jan;
Snoeyink, Jack;
Wei Wang;
Tropsha, Alexander

Publication type:

Article

Maximum independent set for intervals by divide and conquer with pruning.

Published in:

Networks, 2007, v. 49, n. 2, p. 158, doi. 10.1002/net.20150

By:

Snoeyink, Jack

Publication type:

Article

MolProbity: More and better reference data for improved all-atom structure validation.

Published in:

Protein Science: A Publication of the Protein Society, 2018, v. 27, n. 1, p. 293, doi. 10.1002/pro.3330

By:

Williams, Christopher J.;
Headd, Jeffrey J.;
Moriarty, Nigel W.;
Prisant, Michael G.;
Videau, Lizbeth L.;
Deis, Lindsay N.;
Verma, Vishal;
Keedy, Daniel A.;
Hintze, Bradley J.;
Chen, Vincent B.;
Jain, Swati;
Lewis, Steven M.;
Arendall, III, W. Bryan;
Snoeyink, Jack;
Adams, Paul D.;
Lovell, Simon C.;
Richardson, Jane S.;
Richardson, David C.

Publication type:

Article

Structure-based function inference using protein family-specific fingerprints.

Published in:

Protein Science: A Publication of the Protein Society, 2006, v. 15, n. 6, p. 1537, doi. 10.1110/ps.062189906

By:

Bandyopadhyay, Deepak;
Huan, Jun;
Liu, Jinze;
Prins, Jan;
Snoeyink, Jack;
Wang, Wei;
Tropsha, Alexander

Publication type:

Article

Maintaining solvent accessible surface area under rotamer substitution for protein design.

Published in:

Journal of Computational Chemistry, 2007, v. 28, n. 8, p. 1336, doi. 10.1002/jcc.20626

By:

Leaver-Fay, Andrew;
Butterfoss, Glenn L.;
Snoeyink, Jack;
Kuhlman, Brian

Publication type:

Article

Efficient Algorithms for Maximum Regression Depth.

Published in:

Discrete & Computational Geometry, 2008, v. 39, n. 4, p. 656, doi. 10.1007/s00454-007-9046-6

By:

Marc van Kreveld;
Joseph Mitchell;
Peter Rousseeuw;
Micha Sharir;
Jack Snoeyink;
Bettina Speckmann

Publication type:

Article

FARAWAY POINT:: A SENTINEL POINT FOR DELAUNAY COMPUTATION.

Published in:

International Journal of Computational Geometry & Applications, 2008, v. 18, n. 4, p. 343, doi. 10.1142/S0218195908002660

By:

Yuanxin Liu;
Snoeyink, Jack

Publication type:

Article

THE REFLEX-FREE HULL.

Published in:

International Journal of Computational Geometry & Applications, 2004, v. 14, n. 6, p. 453, doi. 10.1142/S0218195904001548

By:

Ahn, Hee-Kap;
Cheng, Siu-Wing;
Cheong, Otfried;
Snoeyink, Jack

Publication type:

Article

On the Time Bound for Convex Decomposition of Simple Polygons.

Published in:

International Journal of Computational Geometry & Applications, 2002, v. 12, n. 3, p. 181, doi. 10.1142/S0218195902000803

By:

Keil, Mark;
Snoeyink, Jack;
Chazelle, B.

Publication type:

Article

Kinetic Collision Detection for Simple Polygons.

Published in:

International Journal of Computational Geometry & Applications, 2002, v. 12, n. 1/2, p. 3, doi. 10.1142/S0218195902000724

By:

Kirkpatrick, David;
Snoeyink, Jack;
Speckmann, Bettina;
de Berg, Mark

Publication type:

Article

Computing Constrained Shortest Segments: Butterfly Wingspans in Logarithmic Time.

Published in:

International Journal of Computational Geometry & Applications, 1999, v. 9, n. 1, p. 53, doi. 10.1142/S0218195999000054

By:

Kirkpatrick, David;
Snoeyink, Jack;
Lee, D. T.

Publication type:

Article

MINIMUM-LINK C-ORIENTED PATHS: SINGLE-SOURCE QUERIES.

Published in:

International Journal of Computational Geometry & Applications, 1994, v. 4, n. 1, p. 39, doi. 10.1142/S0218195994000045

By:

ADEGEEST, JOHN;
OVERMARS, MARK;
SNOEYINK, JACK

Publication type:

Article

APPROXIMATING POLYGONS AND SUBDIVISIONS WITH MINIMUM-LINK PATHS.

Published in:

International Journal of Computational Geometry & Applications, 1993, v. 3, n. 4, p. 383, doi. 10.1142/S0218195993000257

By:

GUIBAS, LEONIDAS J.;
HERSHBERGER, JOHN E.;
MITCHELL, JOSEPH S.B.;
SNOEYINK, JACK SCOTT

Publication type:

Article

COMPACT INTERVAL TREES: A DATA STRUCTURE FOR CONVEX HULLS.

Published in:

International Journal of Computational Geometry & Applications, 1991, v. 1, n. 1, p. 1, doi. 10.1142/S0218195991000025

By:

GUIBAS, LEONIDAS;
HERSHBERGER, JOHN;
SNOEYINK, JACK

Publication type:

Article