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Mating Assay: Plating Below a Cell Density Threshold is Required for Unbiased Estimation of Plasmid Conjugation Frequency of RP4 Transfer Between E. coli Strains.
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- Microbial Ecology, 2024, v. 87, n. 1, p. 1, doi. 10.1007/s00248-024-02427-7
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- Article
SAMPLING METHODS TO DETERMINE THE SPATIAL GRADIENTS AND FLUX OF ARSENIC AT A GROUNDWATER SEEPAGE ZONE.
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- Environmental Toxicology & Chemistry, 2006, v. 25, n. 6, p. 1487, doi. 10.1897/05-402R.1
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- Article
BENCH-SCALE EVALUATION OF IN SITU BIOREMEDIATION STRATEGIES FOR SOIL AT A FORMER MANUFACTURED GAS PLANT SITE.
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- Environmental Toxicology & Chemistry, 2005, v. 24, n. 3, p. 14, doi. 10.1897/04-247R.1
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- Article
Microbial biotechnologies for potable water production.
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- Microbial Biotechnology, 2017, v. 10, n. 5, p. 1094, doi. 10.1111/1751-7915.12837
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Underestimation of ammonia-oxidizing bacteria abundance by amplification bias in amoA-targeted qPCR.
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- Microbial Biotechnology, 2016, v. 9, n. 4, p. 519, doi. 10.1111/1751-7915.12366
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- Article
Sequentially aerated membrane biofilm reactors for autotrophic nitrogen removal: microbial community composition and dynamics.
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- Microbial Biotechnology, 2014, v. 7, n. 1, p. 32, doi. 10.1111/1751-7915.12079
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- Article
Crystal ball - 2013.
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- Microbial Biotechnology, 2013, v. 6, n. 1, p. 3, doi. 10.1111/1751-7915.12014
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- Article
Seasonal and spatial variations in microbial activity at various phylogenetic resolutions at a groundwater - surface water interface.
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- Canadian Journal of Microbiology, 2014, v. 60, n. 5, p. 277, doi. 10.1139/cjm-2014-0048
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- Article
Is it selfish to be filamentous in biofilms? Individual-based modeling links microbial growth strategies with morphology using the new and modular iDynoMiCS 2.0.
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- PLoS Computational Biology, 2024, v. 20, n. 2, p. 1, doi. 10.1371/journal.pcbi.1011303
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- Article
Proterozoic Acquisition of Archaeal Genes for Extracellular Electron Transfer: A Metabolic Adaptation of Aerobic Ammonia-Oxidizing Bacteria to Oxygen Limitation.
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- Molecular Biology & Evolution, 2023, v. 40, n. 8, p. 1, doi. 10.1093/molbev/msad161
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- Article
Heterotrophs are key contributors to nitrous oxide production in activated sludge under low C-to-N ratios during nitrification-Batch experiments and modeling.
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- Biotechnology & Bioengineering, 2017, v. 114, n. 1, p. 132, doi. 10.1002/bit.26062
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A new extant respirometric assay to estimate intrinsic growth parameters applied to study plasmid metabolic burden.
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- Biotechnology & Bioengineering, 2010, v. 105, n. 1, p. 141, doi. 10.1002/bit.22518
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The effect of hydroxylamine on the activity and aggregate structure of autotrophic nitrifying bioreactor cultures.
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- Biotechnology & Bioengineering, 2009, v. 102, n. 3, p. 714, doi. 10.1002/bit.22121
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A critical comparison of extant batch respirometric and substrate depletion assays for estimation of nitrification biokinetics.
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- Biotechnology & Bioengineering, 2008, v. 101, n. 1, p. 62, doi. 10.1002/bit.21871
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- Article
Redox-stratification controlled biofilm (ReSCoBi) for completely autotrophic nitrogen removal: The effect of co- versus counter-diffusion on reactor performance.
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- Biotechnology & Bioengineering, 2007, v. 97, n. 1, p. 40, doi. 10.1002/bit.21213
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- Article
Oxidation of aminonitrotoluenes by 2,4-DNT dioxygenase of Burkholderia sp. strain DNT.
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- Biotechnology & Bioengineering, 2006, v. 93, n. 2, p. 231, doi. 10.1002/bit.20682
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Saturation mutagenesis of 2,4-DNT dioxygenase of Burkholderia sp. strain DNT for enhanced dinitrotoluene degradation.
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- Biotechnology & Bioengineering, 2005, v. 92, n. 4, p. 416, doi. 10.1002/bit.20602
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- Article
Metabolism of 2,4-dinitrotoluene (2,4-DNT) by Alcaligenes sp. JS867 under oxygen limited conditions
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- Biodegradation, 2001, v. 12, n. 4, p. 209, doi. 10.1023/A:1013143101120
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- Article
Novel assay to measure the plasmid mobilizing potential of mixed microbial communities.
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- Frontiers in Microbiology, 2014, v. 5, p. 1, doi. 10.3389/fmicb.2014.00730
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Fine scale spatial variability of microbial pesticide degradation in soil: scales, controlling factors, and implications.
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- Frontiers in Microbiology, 2014, v. 5, p. 1, doi. 10.3389/fmicb.2014.00667
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Calibration and validation of a model describing complete autotrophic nitrogen removal in a granular SBR system.
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- Journal of Chemical Technology & Biotechnology, 2013, v. 88, n. 11, p. 2007, doi. 10.1002/jctb.4060
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Horizontal gene transfer: perspectives at a crossroads of scientific disciplines.
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- Nature Reviews Microbiology, 2005, v. 3, n. 9, p. 675, doi. 10.1038/nrmicro1253
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Efficient management of the nitritation-anammox microbiome through intermittent aeration: absence of the NOB guild and expansion and diversity of the NOx reducing guild suggests a highly reticulated nitrogen cycle.
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- Environmental Microbiome, 2022, v. 17, n. 1, p. 1, doi. 10.1186/s40793-022-00432-2
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Broad host range plasmids can invade an unexpectedly diverse fraction of a soil bacterial community.
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- ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2015, v. 9, n. 4, p. 934, doi. 10.1038/ismej.2014.191
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- Article
Biokinetic Characterization of the Acceleration Phase in Autotrophic Ammonia Oxidation.
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- Water Environment Research (10614303), 2008, v. 80, n. 8, p. 732, doi. 10.2175/106143008X296442
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Relative Efficacy of Intrinsic and Extant Parameters for Modeling Biodegradation of Synthetic Organic Compounds in Activated Sludge: Dynamic Systems.
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- Water Environment Research (10614303), 2004, v. 76, n. 3, p. 256, doi. 10.2175/106143004X141816
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- Article
Relative Efficacy of Intrinsic and Extant Parameters for Modeling Biodegradation of Synthetic Organic Compounds in Activated Sludge: Steady-State Systems.
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- Water Environment Research (10614303), 2003, v. 75, n. 2, p. 126, doi. 10.2175/106143003X140917
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Methanotrophic contribution to biodegradation of phenoxy acids in cultures enriched from a groundwater-fed rapid sand filter.
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- Applied Microbiology & Biotechnology, 2019, v. 103, n. 2, p. 1007, doi. 10.1007/s00253-018-9501-8
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Nitrous oxide emissions from biofilm processes for wastewater treatment.
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- Applied Microbiology & Biotechnology, 2018, v. 102, n. 22, p. 9815, doi. 10.1007/s00253-018-9332-7
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Autotrophic Nitrogen Removal in a Membrane-Aerated Biofilm Reactor Under Continuous Aeration: A Demonstration.
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- Environmental Engineering Science, 2013, v. 30, n. 1, p. 38, doi. 10.1089/ees.2012.0222
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Effective Biological Nitrogen Removal Treatment Processes for Domestic Wastewaters with Low C/N Ratios: A Review.
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- Environmental Engineering Science, 2010, v. 27, n. 2, p. 111, doi. 10.1089/ees.2009.0100
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- Article
Nitrification Inhibition by Ethylenediamine-Based Chelating Agents.
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- Environmental Engineering Science, 2003, v. 20, n. 3, p. 219, doi. 10.1089/109287503321671429
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- Article
Plasmid permissiveness of wastewater microbiomes can be predicted from 16S rRNA sequences by machine learning.
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- Bioinformatics, 2023, v. 39, n. 7, p. 1, doi. 10.1093/bioinformatics/btad400
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Colony morphology and transcriptome profiling of Pseudomonas putida KT2440 and its mutants deficient in alginate or all EPS synthesis under controlled matric potentials.
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- MicrobiologyOpen, 2014, v. 3, n. 4, p. 457, doi. 10.1002/mbo3.180
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Coupling pathway prediction and fluorescence spectroscopy to assess the impact of auxiliary substrates on micropollutant biodegradation.
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- Environmental Microbiology, 2024, v. 26, n. 2, p. 1, doi. 10.1111/1462-2920.16560
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The pH dependency of N‐converting enzymatic processes, pathways and microbes: effect on net N<sub>2</sub>O production.
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- Environmental Microbiology, 2018, v. 20, n. 5, p. 1623, doi. 10.1111/1462-2920.14063
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- Article
Comammox <italic>Nitrospira</italic> are abundant ammonia oxidizers in diverse groundwater‐fed rapid sand filter communities.
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- Environmental Microbiology, 2018, v. 20, n. 3, p. 1002, doi. 10.1111/1462-2920.14033
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Nitrotoga is selected over Nitrospira in newly assembled biofilm communities from a tap water source community at increased nitrite loading.
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- Environmental Microbiology, 2017, v. 19, n. 7, p. 2785, doi. 10.1111/1462-2920.13792
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An improved method to set significance thresholds for β diversity testing in microbial community comparisons.
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- Environmental Microbiology, 2015, v. 17, n. 9, p. 3154, doi. 10.1111/1462-2920.12748
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- Article
IncHI1A plasmids potentially facilitate horizontal flow of antibiotic resistance genes to pathogens in microbial communities of urban residential sewage.
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- Molecular Ecology, 2022, v. 31, n. 5, p. 1595, doi. 10.1111/mec.16346
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- Article
Long-term manure exposure increases soil bacterial community potential for plasmid uptake.
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- Environmental Microbiology Reports, 2014, v. 6, n. 2, p. 125, doi. 10.1111/1758-2229.12138
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iDynoMiCS: next-generation individual-based modelling of biofilms.
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- Environmental Microbiology, 2011, v. 13, n. 9, p. 2416, doi. 10.1111/j.1462-2920.2011.02414.x
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Growth dependence of conjugation explains limited plasmid invasion in biofilms: an individual-based modelling study.
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- Environmental Microbiology, 2011, v. 13, n. 9, p. 2435, doi. 10.1111/j.1462-2920.2011.02535.x
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- Article
Inoculum effects on community composition and nitritation performance of autotrophic nitrifying biofilm reactors with counter-diffusion geometry.
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- Environmental Microbiology, 2010, v. 12, n. 10, p. 2858, doi. 10.1111/j.1462-2920.2010.02267.x
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- Article
Applicability of two-step models in estimating nitrification kinetics from batch respirograms under different relative dynamics of ammonia and nitrite oxidation.
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- Biotechnology & Bioengineering, 2000, v. 70, n. 1, p. 54, doi. 10.1002/1097-0290(20001005)70:1<54::AID-BIT7>3.0.CO;2-H
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Single-step nitrification models erroneously describe batch ammonia oxidation profiles when nitrite oxidation becomes rate limiting.
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- Biotechnology & Bioengineering, 2000, v. 68, n. 4, p. 396, doi. 10.1002/(SICI)1097-0290(20000520)68:4<396::AID-BIT5>3.0.CO;2-S
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- Article
Kinetic analysis of simultaneous 2,4-dinitrotoluene (DNT) and 2,6-DNT biodegradation in an aerobic fluidized-bed biofilm reactor.
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- Biotechnology & Bioengineering, 1999, v. 63, n. 6, p. 642, doi. 10.1002/(SICI)1097-0290(19990620)63:6<642::AID-BIT2>3.0.CO;2-B
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Respirometric assay for biofilm kinetics estimation: Parameter identifiability and retrievability.
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- Biotechnology & Bioengineering, 1998, v. 57, n. 1, p. 35, doi. 10.1002/(SICI)1097-0290(19980105)57:1<35::AID-BIT5>3.0.CO;2-W
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TNT biotransformation: when chemistry confronts mineralization.
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- Applied Microbiology & Biotechnology, 2007, v. 76, n. 2, p. 267, doi. 10.1007/s00253-007-1008-7
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Reductive transformation of TNT by Escherichia coli resting cells: kinetic analysis.
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- Applied Microbiology & Biotechnology, 2005, v. 69, n. 3, p. 326, doi. 10.1007/s00253-005-1988-0
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- Article