Works by Smedley, Damian
Results: 60
Phenotype‐driven approaches to enhance variant prioritization and diagnosis of rare disease.
- Published in:
- Human Mutation, 2022, v. 43, n. 8, p. 1071, doi. 10.1002/humu.24380
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- Article
matchbox: An open‐source tool for patient matching via the Matchmaker Exchange.
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- Human Mutation, 2018, v. 39, n. 12, p. 1827, doi. 10.1002/humu.23655
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- Article
Use of Model Organism and Disease Databases to Support Matchmaking for Human Disease Gene Discovery.
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- Human Mutation, 2015, v. 36, n. 10, p. 979, doi. 10.1002/humu.22857
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- Article
Jannovar: A Java Library for Exome Annotation.
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- Human Mutation, 2014, v. 35, n. 5, p. 548, doi. 10.1002/humu.22531
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- Article
Getting Ready for the Human Phenome Project: The 2012 Forum of the Human Variome Project.
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- Human Mutation, 2013, v. 34, n. 4, p. 661, doi. 10.1002/humu.22293
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- Article
Linking gene expression to phenotypes via pathway information.
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- Journal of Biomedical Semantics, 2015, v. 6, n. 1, p. 1, doi. 10.1186/s13326-015-0013-5
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- Article
Towards the integration of mouse databases - definition and implementation of solutions to two use-cases in mouse functional genomics.
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- BMC Research Notes, 2010, v. 3, p. 1, doi. 10.1186/1756-0500-3-16
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- Article
Efficient reinterpretation of rare disease cases using Exomiser.
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- NPJ Genomic Medicine, 2024, v. 9, n. 1, p. 1, doi. 10.1038/s41525-024-00456-2
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- Article
PheneBank: a literature-based database of phenotypes.
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- Bioinformatics, 2022, v. 38, n. 4, p. 1179, doi. 10.1093/bioinformatics/btab740
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- Article
Fusion of splicing factor genes PSF and NonO (p54<sup>nrb</sup>) to the TFE3 gene in papillary renal cell carcinoma.
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- Oncogene, 1997, v. 15, n. 18, p. 2233, doi. 10.1038/sj.onc.1201394
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- Article
An Improved Phenotype-Driven Tool for Rare Mendelian Variant Prioritization: Benchmarking Exomiser on Real Patient Whole-Exome Data.
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- Genes, 2020, v. 11, n. 4, p. 1, doi. 10.3390/genes11040460
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- Article
Phenotype-driven strategies for exome prioritization of human Mendelian disease genes.
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- Genome Medicine, 2015, v. 7, n. 1, p. 1, doi. 10.1186/s13073-015-0199-2
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- Article
Association and haplotype analysis of the insulin-degrading enzyme (IDE) gene, a strong positional and biological candidate for type 2 diabetes susceptibility.
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- 2003
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- journal article
TRACER: a resource to study the regulatory architecture of the mouse genome.
- Published in:
- BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-215
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- Article
Incremental data integration for tracking genotype-disease associations.
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- PLoS Computational Biology, 2020, v. 16, n. 1, p. 1, doi. 10.1371/journal.pcbi.1007586
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- Article
Applying the ARRIVE Guidelines to an In Vivo Database.
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- PLoS Biology, 2015, v. 13, n. 5, p. 1, doi. 10.1371/journal.pbio.1002151
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- Article
Novel skin phenotypes revealed by a genome-wide mouse reverse genetic screen.
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- Nature Communications, 2014, v. 5, n. 4, p. 3540, doi. 10.1038/ncomms4540
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- Article
Generation of Silver Standard Concept Annotations from Biomedical Texts with Special Relevance to Phenotypes.
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- PLoS ONE, 2015, v. 10, n. 1, p. 1, doi. 10.1371/journal.pone.0116040
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- Article
Characterization of chromosome 1 abnormalities in malignant melanomas.
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- Genes, Chromosomes & Cancer, 2000, v. 28, n. 1, p. 121, doi. 10.1002/(SICI)1098-2264(200005)28:1<121::AID-GCC14>3.0.CO;2-O
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- Article
Characterization of a t(8;13)(p11;q11-12) in an atypical myeloproliferative disorder.
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- Genes, Chromosomes & Cancer, 1998, v. 21, n. 1, p. 70, doi. 10.1002/(SICI)1098-2264(199801)21:1<70::AID-GCC9>3.0.CO;2-5
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- Article
Evaluation of phenotype-driven gene prioritization methods for Mendelian diseases.
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- Briefings in Bioinformatics, 2022, v. 23, n. 5, p. 1, doi. 10.1093/bib/bbac188
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- Article
Solutions for data integration in functional genomics: a critical assessment and case study.
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- Briefings in Bioinformatics, 2008, v. 9, n. 6, p. 532, doi. 10.1093/bib/bbn040
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- Article
OpenStats: A robust and scalable software package for reproducible analysis of high-throughput phenotypic data.
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- PLoS ONE, 2020, v. 15, n. 12, p. 1, doi. 10.1371/journal.pone.0242933
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- Article
De novo and inherited monoallelic variants in TUBA4A cause ataxia and spasticity.
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- Brain: A Journal of Neurology, 2024, v. 147, n. 11, p. 3681, doi. 10.1093/brain/awae193
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- Article
Functional genomics provide key insights to improve the diagnostic yield of hereditary ataxia.
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- Brain: A Journal of Neurology, 2023, v. 146, n. 7, p. 2869, doi. 10.1093/brain/awad009
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- Article
Variation at the IRF2 Gene and Susceptibility to Psoriasis in Chromosome 4q-Linked Families.
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- Journal of Investigative Dermatology, 2004, v. 122, n. 3, p. 640, doi. 10.1046/j.0022-202X.2004.22135.x
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- Article
Ensembl variation resources.
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- BMC Genomics, 2010, v. 11, p. 293, doi. 10.1186/1471-2164-11-293
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- Article
BioMart -- biological queries made easy.
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- BMC Genomics, 2009, v. 10, p. 1, doi. 10.1186/1471-2164-10-22
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- Article
The t(8;13)(p11;q11-12) rearrangement associated with an atypical myeloproliferative disorder fuses the fibroblast growth factor receptor 1 gene to a novel gene RAMP.
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- Human Molecular Genetics, 1998, v. 7, n. 4, p. 637, doi. 10.1093/hmg/7.4.637
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- Publication type:
- Article
Improving prenatal diagnosis through standards and aggregation.
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- Prenatal Diagnosis, 2024, v. 44, n. 4, p. 454, doi. 10.1002/pd.6522
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- Article
BioMart Central Portal—unified access to biological data.
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- Nucleic Acids Research, 2009, v. 37, n. suppl_2, p. W23, doi. 10.1093/nar/gkp265
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- Article
PhenoMiner: from text to a database of phenotypes associated with OMIM diseases.
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- Database: The Journal of Biological Databases & Curation, 2015, v. 2015, p. 1, doi. 10.1093/database/bav104
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- Article
Automatic concept recognition using the Human Phenotype Ontology reference and test suite corpora.
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- Database: The Journal of Biological Databases & Curation, 2015, v. 2015, p. 1, doi. 10.1093/database/bav005
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- Article
Linking tissues to phenotypes using gene expression profiles.
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- Database: The Journal of Biological Databases & Curation, 2014, v. 2014, p. 1, doi. 10.1093/database/bau017
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- Article
PhenoDigm: analyzing curated annotations to associate animal models with human diseases.
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- Database: The Journal of Biological Databases & Curation, 2013, v. 2013, p. 1, doi. 10.1093/database/bat025
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- Article
CreZOO—the European virtual repository of Cre and other targeted conditional driver strains.
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- Database: The Journal of Biological Databases & Curation, 2012, v. 2012, p. 1, doi. 10.1093/database/bas029
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- Article
BioMart as an integration solution for the International Knockout Mouse Consortium.
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- Database: The Journal of Biological Databases & Curation, 2011, v. 2011, p. 1, doi. 10.1093/database/bar028
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- Article
Mouse Resource Browser—a database of mouse databases.
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- Database: The Journal of Biological Databases & Curation, 2010, v. 2010, p. 1, doi. 10.1093/database/baq010
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- Article
Finding and sharing: new approaches to registries of databases and services for the biomedical sciences.
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- Database: The Journal of Biological Databases & Curation, 2010, v. 2010, p. 1, doi. 10.1093/database/baq014
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- Article
Models for financial sustainability of biological databases and resources.
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- Database: The Journal of Biological Databases & Curation, 2009, v. 2009, p. 1, doi. 10.1093/database/bap017
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- Article
Use of animal models for exome prioritization of rare disease genes
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- Orphanet Journal of Rare Diseases, 2014, v. 9, n. 1, p. 1, doi. 10.1186/1750-1172-9-S1-O19
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- Article
Walking the interactome for candidate prioritization in exome sequencing studies of Mendelian diseases.
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- Bioinformatics, 2014, v. 30, n. 22, p. 3215, doi. 10.1093/bioinformatics/btu508
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- Article
Using association rule mining to determine promising secondary phenotyping hypotheses.
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- Bioinformatics, 2014, v. 30, n. 12, p. i52
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- Article
CYP2C19 loss‐of‐function alleles are not associated with higher prevalence of gastrointestinal bleeds in those who have been prescribed antidepressants: Analysis in a British‐South Asian cohort.
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- British Journal of Clinical Pharmacology, 2023, v. 89, n. 11, p. 3432, doi. 10.1111/bcp.15762
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- Article
A non-coding insertional mutation of Grhl2 causes gene over-expression and multiple structural anomalies including cleft palate, spina bifida and encephalocele.
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- Human Molecular Genetics, 2023, v. 32, n. 17, p. 2681, doi. 10.1093/hmg/ddad094
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- Article
International Mouse Phenotyping Consortium: comprehensive knockout phenotyping underpinning the study of human disease.
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- Nucleic Acids Research, 2023, v. 51, n. D1, p. D1038, doi. 10.1093/nar/gkac972
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- Article
Deletions of chromosomal regulatory boundaries are associated with congenital disease.
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- Genome Biology, 2014, v. 15, n. 7, p. 423, doi. 10.1186/s13059-014-0423-1
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- Publication type:
- Article
Next-generation diagnostics and disease-gene discovery with the Exomiser.
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- Nature Protocols, 2015, v. 10, n. 12, p. 1, doi. 10.1038/nprot.2015.124
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- Article
Diffusion enables integration of heterogeneous data and user-driven learning in a desktop knowledge-base.
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- PLoS Computational Biology, 2021, p. 1, doi. 10.1371/journal.pcbi.1009283
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- Article
Essential genes: a cross-species perspective.
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- Mammalian Genome, 2023, v. 34, n. 3, p. 357, doi. 10.1007/s00335-023-09984-1
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- Article