Works by Skok, Jane A.

Results: 28

It takes two.

Published in:

Nucleus (1949-1034), 2010, v. 1, n. 1, p. 23, doi. 10.4161/nucl.1.1.10595

By:

Brandt, Vicky L.;
Hewitt, Susannah L.;
Skok, Jane A.

Publication type:

Article

Equal opportunity for all.

Published in:

EMBO Journal, 2012, v. 31, n. 7, p. 1627, doi. 10.1038/emboj.2012.64

By:

Chaumeil, Julie;
Skok, Jane A

Publication type:

Article

The pre-B-cell receptor induces silencing of VpreB and λ5 transcription.

Published in:

EMBO Journal, 2005, v. 24, n. 22, p. 3895, doi. 10.1038/sj.emboj.7600850

By:

Parker, Mathew J.;
Licence, Steve;
Erlandsson, Lena;
Galler, Gunther R.;
Chakalova, Lyubomira;
Osborne, Cameron S.;
Morgan, Geoff;
Fraser, Peter;
Jumaa, Hassan;
Winkler, Thomas H.;
Skok, Jane;
Mårtensson, Inga-Lill

Publication type:

Article

Stage-specific epigenetic regulation of CD4 expression by coordinated enhancer elements during T cell development.

Published in:

Nature Communications, 2018, p. 1, doi. 10.1038/s41467-018-05834-w

By:

Issuree, Priya D.;
Day, Kenneth;
Au, Christy;
Ramya Raviram;
Zappile, Paul;
Skok, Jane A.;
Hai-Hui Xue;
Myers, Richard M.;
Littman, Dan R.

Publication type:

Article

The RAG2 C terminus suppresses genomic instability and lymphomagenesis.

Published in:

Nature, 2011, v. 471, n. 7336, p. 119, doi. 10.1038/nature09755

By:

Deriano, Ludovic;
Chaumeil, Julie;
Coussens, Marc;
Multani, Asha;
YiFan Chou;
Alekseyenko, Alexander V.;
Sandy Chang;
Skok, Jane A.;
Roth, David B.

Publication type:

Article

NSD2 overexpression drives clustered chromatin and transcriptional changes in a subset of insulated domains.

Published in:

Nature Communications, 2019, v. 10, n. 1, p. 1, doi. 10.1038/s41467-019-12811-4

By:

Lhoumaud, Priscillia;
Badri, Sana;
Rodriguez-Hernaez, Javier;
Sakellaropoulos, Theodore;
Sethia, Gunjan;
Kloetgen, Andreas;
Cornwell, MacIntosh;
Bhattacharyya, Sourya;
Ay, Ferhat;
Bonneau, Richard;
Tsirigos, Aristotelis;
Skok, Jane A.

Publication type:

Article

B-1a cells acquire their unique characteristics by bypassing the pre-BCR selection stage.

Published in:

Nature Communications, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41467-019-12824-z

By:

Wong, Jason B.;
Hewitt, Susannah L.;
Heltemes-Harris, Lynn M.;
Mandal, Malay;
Johnson, Kristen;
Rajewsky, Klaus;
Koralov, Sergei B.;
Clark, Marcus R.;
Farrar, Michael A.;
Skok, Jane A.

Publication type:

Article

4C-ker: A Method to Reproducibly Identify Genome-Wide Interactions Captured by 4C-Seq Experiments.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 3, p. 1, doi. 10.1371/journal.pcbi.1004780

By:

Raviram, Ramya;
Rocha, Pedro P.;
Müller, Christian L.;
Miraldi, Emily R.;
Badri, Sana;
Fu, Yi;
Swanzey, Emily;
Proudhon, Charlotte;
Snetkova, Valentina;
Bonneau, Richard;
Skok, Jane A.

Publication type:

Article

A new take on V(D)J recombination: transcription driven nuclear and chromatin reorganization in RAG-mediated cleavage.

Published in:

Frontiers in Immunology, 2013, v. 4, p. 1, doi. 10.3389/fimmu.2013.00423

By:

Chaumeil, Julie;
Skok, Jane A.

Publication type:

Article

Cell-type-specific prediction of 3D chromatin organization enables high-throughput in silico genetic screening.

Published in:

Nature Biotechnology, 2023, v. 41, n. 8, p. 1140, doi. 10.1038/s41587-022-01612-8

By:

Tan, Jimin;
Shenker-Tauris, Nina;
Rodriguez-Hernaez, Javier;
Wang, Eric;
Sakellaropoulos, Theodore;
Boccalatte, Francesco;
Thandapani, Palaniraja;
Skok, Jane;
Aifantis, Iannis;
Fenyö, David;
Xia, Bo;
Tsirigos, Aristotelis

Publication type:

Article

Identification of multi-loci hubs from 4C-seq demonstrates the functional importance of simultaneous interactions.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 18, p. 8714, doi. 10.1093/nar/gkw568

By:

Tingting Jiang;
Raviram, Ramya;
Snetkova, Valentina;
Rocha, Pedro P.;
Proudhon, Charlotte;
Badri, Sana;
Bonneau, Richard;
Skok, Jane A.;
Kluger, Yuval

Publication type:

Article

CRISPR-dCas9 and sgRNA scaffolds enable dual-colour live imaging of satellite sequences and repeat-enriched individual loci.

Published in:

Nature Communications, 2016, v. 7, n. 5, p. 11707, doi. 10.1038/ncomms11707

By:

Fu, Yi;
Rocha, Pedro P.;
Luo, Vincent M.;
Raviram, Ramya;
Deng, Yan;
Mazzoni, Esteban O.;
Skok, Jane A.

Publication type:

Article

The RAG2 C-terminus and ATM protect genome integrity by controlling antigen receptor gene cleavage.

Published in:

Nature Communications, 2013, v. 4, n. 7, p. 2231, doi. 10.1038/ncomms3231

By:

Chaumeil, Julie;
Micsinai, Mariann;
Ntziachristos, Panagiotis;
Roth, David B.;
Aifantis, Iannis;
Kluger, Yuval;
Deriano, Ludovic;
Skok, Jane A.

Publication type:

Article

Author Correction: Defining the relative and combined contribution of CTCF and CTCFL to genomic regulation.

Published in:

2020

By:

Nishana, Mayilaadumveettil;
Ha, Caryn;
Rodriguez-Hernaez, Javier;
Ranjbaran, Ali;
Chio, Erica;
Nora, Elphege P.;
Badri, Sana B.;
Kloetgen, Andreas;
Bruneau, Benoit G.;
Tsirigos, Aristotelis;
Skok, Jane A.

Publication type:

Correction Notice

Defining the relative and combined contribution of CTCF and CTCFL to genomic regulation.

Published in:

Genome Biology, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s13059-020-02024-0

By:

Nishana, Mayilaadumveettil;
Ha, Caryn;
Rodriguez-Hernaez, Javier;
Ranjbaran, Ali;
Chio, Erica;
Nora, Elphege P.;
Badri, Sana B.;
Kloetgen, Andreas;
Bruneau, Benoit G.;
Tsirigos, Aristotelis;
Skok, Jane A.

Publication type:

Article

Silencing and Nuclear Repositioning of the λ5 Gene Locus at the Pre-B Cell Stage Requires Aiolos and OBF-1.

Published in:

PLoS ONE, 2008, v. 3, n. 10, p. 1, doi. 10.1371/journal.pone.0003568

By:

Karnowski, Alexander;
Chun Cao;
Matthias, Gabriele;
Carotta, Sebastian;
Corcoran, Lynn M.;
Martensson, Inga-Lill;
Skok, Jane A.;
Matthias, Patrick

Publication type:

Article

Chromosome dynamics and the regulation of V(D)J recombination.

Published in:

Immunological Reviews, 2010, v. 237, n. 1, p. 43, doi. 10.1111/j.1600-065X.2010.00931.x

By:

Hewitt, Susannah L.;
Chaumeil, Julie;
Skok, Jane A.

Publication type:

Article

RAG-1 and ATM coordinate monoallelic recombination and nuclear positioning of immunoglobulin loci.

Published in:

2010

By:

Hewitt, Susannah L;
Yin, Bu;
Ji, Yanhong;
Chaumeil, Julie;
Marszalek, Katarzyna;
Tenthorey, Jeannette;
Salvagiotto, Giorgia;
Steinel, Natalie;
Ramsey, Laura B;
Ghysdael, Jacques;
Farrar, Michael A;
Sleckman, Barry P;
Schatz, David G;
Busslinger, Meinrad;
Bassing, Craig H;
Skok, Jane A

Publication type:

Correction Notice

RAG-1 and ATM coordinate monoallelic recombination and nuclear positioning of immunoglobulin loci.

Published in:

2010

By:

Hewitt, Susannah L;
Yin, Bu;
Ji, Yanhong;
Chaumeil, Julie;
Marszalek, Katarzyna;
Tenthorey, Jeannette;
Salvagiotto, Giorgia;
Steinel, Natalie;
Ramsey, Laura B;
Ghysdael, Jacques;
Farrar, Michael A;
Sleckman, Barry P;
Schatz, David G;
Busslinger, Meinrad;
Bassing, Craig H;
Skok, Jane A

Publication type:

Correction Notice

Corrigendum: RAG-1 and ATM coordinate monoallelic recombination and nuclear positioning of immunoglobulin loci.

Published in:

2009

By:

Hewitt, Susannah L;
Yin, Bu;
Ji, Yanhong;
Chaumeil, Julie;
Marszalek, Katarzyna;
Tenthorey, Jeannette;
Salvagiotto, Giorgia;
Steinel, Natalie;
Ramsey, Laura B;
Ghysdael, Jacques;
A Farrar, Michael;
Sleckman, Barry P;
Schatz, David G;
Busslinger, Meinrad;
Bassing, Craig H;
Skok, Jane A

Publication type:

Correction Notice

RAG-1 and ATM coordinate monoallelic recombination and nuclear positioning of immunoglobulin loci.

Published in:

Nature Immunology, 2009, v. 10, n. 6, p. 655, doi. 10.1038/ni.1735

By:

Hewitt, Susannah L;
Yin, Bu;
Ji, Yanhong;
Chaumeil, Julie;
Marszalek, Katarzyna;
Tenthorey, Jeannette;
Salvagiotto, Giorgia;
Steinel, Natalie;
Ramsey, Laura B;
Ghysdael, Jacques;
Farrar, Michael A;
Sleckman, Barry P;
Schatz, David G;
Busslinger, Meinrad;
Bassing, Craig H;
Skok, Jane A

Publication type:

Article

Association between the Igk and Igh immunoglobulin loci mediated by the 3′ Igk enhancer induces 'decontraction' of the Igh locus in pre–B cells.

Published in:

Nature Immunology, 2008, v. 9, n. 4, p. 396, doi. 10.1038/ni1567

By:

Hewitt, Susannah L;
Farmer, Deborah;
Marszalek, Katarzyna;
Cadera, Emily;
Liang, Hong-Erh;
Xu, Yang;
Schlissel, Mark S;
Skok, Jane A

Publication type:

Article

Reversible contraction by looping of the Tcra and Tcrb loci in rearranging thymocytes.

Published in:

Nature Immunology, 2007, v. 8, n. 4, p. 378, doi. 10.1038/ni1448

By:

Skok, Jane A;
Gisler, Ramiro;
Novatchkova, Maria;
Farmer, Deborah;
de Laat, Wouter;
Busslinger, Meinrad

Publication type:

Article

Epigenetic ontogeny of the Igk locus during B cell development.

Published in:

Nature Immunology, 2005, v. 6, n. 2, p. 198, doi. 10.1038/ni1154

By:

Goldmit, Maya;
Ji, Yanhong;
Skok, Jane;
Roldan, Esther;
Jung, Steffen;
Cedar, Howard;
Bergman, Yehudit

Publication type:

Article

Locus 'decontraction' and centromeric recruitment contribute to allelic exclusion of the immunoglobulin heavy-chain gene.

Published in:

Nature Immunology, 2005, v. 6, n. 1, p. 31, doi. 10.1038/ni1150

By:

Roldán, Esther;
Fuxa, Martin;
Chong, Winnie;
Martinez, Dolores;
Novatchkova, Maria;
Busslinger, Meinrad;
Skok, Jane A.

Publication type:

Article

Nonequivalent nuclear location of immunoglobulin alleles in B lymphocytes.

Published in:

Nature Immunology, 2001, v. 2, n. 9, p. 848, doi. 10.1038/ni0901-848

By:

Skok, Jane A.;
Brown, Karen E.;
Azuara, Veronique;
Caparros, Marie-Laure;
Baxter, Jonathan;
Takacs, Katalin;
Dillon, Niall;
Gray, David;
Perry, Robert P.;
Merkenschlager, Matthias;
Fisher, Amanda G.

Publication type:

Article

EpiMethylTag: simultaneous detection of ATAC-seq or ChIP-seq signals with DNA methylation.

Published in:

Genome Biology, 2019, v. 20, n. 1, p. N.PAG, doi. 10.1186/s13059-019-1853-6

By:

Lhoumaud, Priscillia;
Sethia, Gunjan;
Izzo, Franco;
Sakellaropoulos, Theodore;
Snetkova, Valentina;
Vidal, Simon;
Badri, Sana;
Cornwell, Macintosh;
Di Giammartino, Dafne Campigli;
Kim, Kyu-Tae;
Apostolou, Effie;
Stadtfeld, Matthias;
Landau, Dan Avi;
Skok, Jane

Publication type:

Article

Analysis of 3D genomic interactions identifies candidate host genes that transposable elements potentially regulate.

Published in:

Genome Biology, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s13059-018-1598-7

By:

Raviram, Ramya;
Rocha, Pedro P.;
Luo, Vincent M.;
Swanzey, Emily;
Miraldi, Emily R.;
Chuong, Edward B.;
Feschotte, Cédric;
Bonneau, Richard;
Skok, Jane A.

Publication type:

Article