Works by Sklenář, Vladimír

Results: 34

Structure of Bombyx mori chemosensory protein 1 in solution.

Published in:

Archives of Insect Biochemistry & Physiology, 2007, v. 66, n. 3, p. 135, doi. 10.1002/arch.20205

By:

Jansen, Séverine;
Chmelík, Josef;
Žídek, Lukáš;
Padrta, Petr;
Novák, Petr;
Zdráhal, Zbyněk;
Picimbon, Jean-François;
Löfstedt, Christer;
Sklenář, Vladimír

Publication type:

Article

Triple resonance $$^{15}\hbox {N}$$ NMR relaxation experiments for studies of intrinsically disordered proteins.

Published in:

Journal of Biomolecular NMR, 2017, v. 69, n. 3, p. 133, doi. 10.1007/s10858-017-0138-1

By:

Srb, Pavel;
Nováček, Jiří;
Kadeřávek, Pavel;
Rabatinová, Alžbeta;
Krásný, Libor;
Žídková, Jitka;
Bobálová, Janette;
Sklenář, Vladimír;
Žídek, Lukáš

Publication type:

Article

Erratum to: Impact of nucleic acid self-alignment in a strong magnetic field on the interpretation of indirect spin-spin interactions.

Published in:

2016

By:

Vavrinská, Andrea;
Zelinka, Jiří;
Šebera, Jakub;
Sychrovský, Vladimír;
Fiala, Radovan;
Boelens, Rolf;
Sklenář, Vladimír;
Trantírek, Lukáš

Publication type:

Erratum

Impact of nucleic acid self-alignment in a strong magnetic field on the interpretation of indirect spin-spin interactions.

Published in:

Journal of Biomolecular NMR, 2016, v. 64, n. 1, p. 53, doi. 10.1007/s10858-015-0005-x

By:

Vavřinská, Andrea;
Zelinka, Jiří;
Šebera, Jakub;
Sychrovský, Vladimír;
Fiala, Radovan;
Boelens, Rolf;
Sklenář, Vladimír;
Trantírek, Lukáš

Publication type:

Article

Spectral density mapping protocols for analysis of molecular motions in disordered proteins.

Published in:

Journal of Biomolecular NMR, 2014, v. 58, n. 3, p. 193, doi. 10.1007/s10858-014-9816-4

By:

Kadeřávek, Pavel;
Zapletal, Vojtěch;
Rabatinová, Alžbeta;
Krásný, Libor;
Sklenář, Vladimír;
Žídek, Lukáš

Publication type:

Article

Efficient protocol for backbone and side-chain assignments of large, intrinsically disordered proteins: transient secondary structure analysis of 49.2 kDa microtubule associated protein 2c.

Published in:

Journal of Biomolecular NMR, 2013, v. 56, n. 4, p. 291, doi. 10.1007/s10858-013-9761-7

By:

Nováček, Jiří;
Janda, Lubomír;
Dopitová, Radka;
Žídek, Lukáš;
Sklenář, Vladimír

Publication type:

Article

Influence of the O-phosphorylation of serine, threonine and tyrosine in proteins on the amidic N chemical shielding anisotropy tensors.

Published in:

Journal of Biomolecular NMR, 2013, v. 55, n. 1, p. 59, doi. 10.1007/s10858-012-9686-6

By:

Emmer, Jiří;
Vavrinská, Andrea;
Sychrovský, Vladimír;
Benda, Ladislav;
Kříž, Zdeněk;
Koča, Jaroslav;
Boelens, Rolf;
Sklenář, Vladimír;
Trantírek, Lukáš

Publication type:

Article

4D Non-uniformly sampled HCBCACON and J(NC)-selective HCBCANCO experiments for the sequential assignment and chemical shift analysis of intrinsically disordered proteins.

Published in:

Journal of Biomolecular NMR, 2012, v. 53, n. 2, p. 139, doi. 10.1007/s10858-012-9631-8

By:

Nováček, Jiří;
Haba, Noam;
Chill, Jordan;
Žídek, Lukáš;
Sklenář, Vladimír

Publication type:

Article

5D 13C-detected experiments for backbone assignment of unstructured proteins with a very low signal dispersion.

Published in:

Journal of Biomolecular NMR, 2011, v. 50, n. 1, p. 1, doi. 10.1007/s10858-011-9496-2

By:

Nováček, Jiří;
Zawadzka-Kazimierczuk, Anna;
Papoušková, Veronika;
Žídek, Lukáš;
Šanderová, Hana;
Krásný, Libor;
Koźmiński, Wiktor;
Sklenář, Vladimír

Publication type:

Article

Strategy for complete NMR assignment of disordered proteins with highly repetitive sequences based on resolution-enhanced 5D experiments.

Published in:

Journal of Biomolecular NMR, 2010, v. 48, n. 3, p. 169, doi. 10.1007/s10858-010-9447-3

By:

Motáčková, Veronika;
Nováček, Jiří;
Zawadzka-Kazimierczuk, Anna;
Kazimierczuk, Krzysztof;
Žídek, Lukáš;
Šanderová, Hana;
Krásný, Libor;
Koźmiński, Wiktor;
Sklenář, Vladimír

Publication type:

Article

S3EPY: a Sparky extension for determination of small scalar couplings from spin-state-selective excitation NMR experiments.

Published in:

Journal of Biomolecular NMR, 2010, v. 46, n. 2, p. 191, doi. 10.1007/s10858-009-9392-1

By:

Novák, Petr;
Žídek, Lukáš;
Motáčková, Veronika;
Padrta, Petr;
Švenková, Alžběta;
Nuzillard, Jean-Marc;
Krásný, Libor;
Sklenář, Vladimír

Publication type:

Article

Structure and binding specificity of the receiver domain of sensor histidine kinase CKI1 from Arabidopsis thaliana.

Published in:

Plant Journal, 2011, v. 67, n. 5, p. 827, doi. 10.1111/j.1365-313X.2011.04637.x

By:

Pekárová, Blanka;
Klumpler, Tomáš;
Třísková, Olga;
Horák, Jakub;
Jansen, Séverine;
Dopitová, Radka;
Borkovcová, Petra;
Papoušková, Veronika;
Nejedlá, Eliška;
Sklenář, Vladimír;
Marek, Jaromír;
Žídek, Lukáš;
Hejátko, Jan;
Janda, Lubomír

Publication type:

Article

Soluble recombinant CD69 receptors optimized to have an exceptional physical and chemical stability display prolonged circulation and remain intact in the blood of mice.

Published in:

FEBS Journal, 2008, v. 275, n. 22, p. 5589, doi. 10.1111/j.1742-4658.2008.06683.x

By:

Vaněk, Ondřej;
Nálezkov, Monika;
Kavan, Daniel;
Borovičkov, Ivana;
Pompach, Petr;
Novák, Petr;
Kumar, Vinay;
Vannucci, Luca;
Hudeček, Ji;
Hofbauerová, Kateřina;
Kopecký Jr, Vladimír;
Brynda, Jiří;
Kolenko, Petr;
Dohnálek, Jan;
Kadeřávek, Pavel;
Chmelík, Josef;
Gorčík, Lukáş;
Žídek, Lukáş;
Sklenář, Vladimír;
Bezouška, Karel

Publication type:

Article

Formal concept analysis with hierarchically ordered attributes.

Published in:

International Journal of General Systems, 2004, v. 33, n. 4, p. 383, doi. 10.1080/03081070410001679715

By:

Bělohlávek, Radim;
Sklenář, Vladimír;
Zacpal, Jiří

Publication type:

Article

Molecular dynamics study of major urinary protein–pheromone interactions: A structural model for ligand-induced flexibility increase

Published in:

FEBS Letters, 2006, v. 580, n. 2, p. 682, doi. 10.1016/j.febslet.2005.12.088

By:

Macek, Pavel;
Novák, Petr;
Křížová, Hana;
Žídek, Lukáš;
Sklenář, Vladimír

Publication type:

Article

LEVEL OF EMPLOYEES KNOWLEDGE OF COMPANY AND INFORMATION STRATEGY.

Published in:

Economics & Management, 2011, v. 16, p. 773

By:

Koch, Miloš;
Radvanský, Martin;
Sklenář, Vladimír

Publication type:

Article

Solution structure of the N-terminal domain of Bacillus subtilis δ subunit of RNA polymerase and its classification based on structural homologs.

Published in:

Proteins, 2010, v. 78, n. 7, p. 1807, doi. 10.1002/prot.22708

By:

Motáčková, Veronika;
Šanderová, Hana;
Žídek, Lukáš;
Nováček, Jiří;
Padrta, Petr;
Švenková, Alžběta;
Korelusová, Jana;
Jonák, Jiří;
Krásný, Libor;
Sklenář, Vladimír

Publication type:

Article

Corrigendum: Structural Study of the Partially Disordered Full-Length δ Subunit of RNA Polymerase from Bacillus subtilis.

Published in:

ChemBioChem, 2013, v. 14, n. 14, p. 1684, doi. 10.1002/cbic.201300497

By:

Papoušková, Veronika;
Kadeřávek, Pavel;
Otrusinová, Olga;
Rabatinová, Alžbeta;
Šanderová, Hana;
Nováček, Jiří;
Krásný, Libor;
Sklenář, Vladimír;
Žídek, Lukáš

Publication type:

Article

Structural Study of the Partially Disordered Full-Length δ Subunit of RNA Polymerase from Bacillus subtilis.

Published in:

ChemBioChem, 2013, v. 14, n. 14, p. 1772, doi. 10.1002/cbic.201300226

By:

Papoušková, Veronika;
Kadeřávek, Pavel;
Otrusinová, Olga;
Rabatinová, Alžbeta;
Šanderová, Hana;
Nováček, Jiří;
Krásný, Libor;
Sklenář, Vladimír;
Žídek, Lukáš

Publication type:

Article

Nuclear magnetic 13C19F double resonance: Fluorine broad band decoupling.

Published in:

Magnetic Resonance in Chemistry, 1984, v. 22, n. 10, p. 662, doi. 10.1002/mrc.1270221013

By:

Sklenář, Vladimír;
Starčuk, Zenon

Publication type:

Article

Carbon-13 chemical shifts of aza-and triaza-adamantane derivatives.

Published in:

Magnetic Resonance in Chemistry, 1984, v. 22, n. 5, p. 352, doi. 10.1002/mrc.1270220516

By:

Trška, Petr;
HáJek, Milan;
Kafka, ZdeněK;
Sklenář, Vladimír

Publication type:

Article

Conformational Dynamics and Antigenicity in the Disordered Malaria Antigen Merozoite Surface Protein 2.

Published in:

PLoS ONE, 2015, v. 10, n. 3, p. 1, doi. 10.1371/journal.pone.0119899

By:

MacRaild, Christopher A.;
Zachrdla, Milan;
Andrew, Dean;
Krishnarjuna, Bankala;
Nováček, Jiří;
Žídek, Lukáš;
Sklenář, Vladimír;
Richards, Jack S.;
Beeson, James G.;
Anders, Robin F.;
Norton, Raymond S.

Publication type:

Article

Dispersion Interactions Govern the Strong Thermal Stability of a Protein.

Published in:

Chemistry - A European Journal, 2007, v. 13, n. 32, p. 9022, doi. 10.1002/chem.200700428

By:

Vondrášek, Jiří;
Kubař, Tomáš;
Jenney, Francis E.;
Adams, Michael W. W.;
Kožíšek, Milan;
Černý, Jiří;
Sklenář, Vladimír;
Hobza, Pavel

Publication type:

Article

Retro operation on the Trp-cage miniprotein sequence produces an unstructured molecule capable of folding similar to the original only upon 2,2,2-trifluoroethanol addition.

Published in:

PEDS: Protein Engineering, Design & Selection, 2014, v. 27, n. 12, p. 463

By:

Vymětal, Jiří;
Bathula, Sreenivas Reddy;
Černý, Jiří;
Chaloupková, Radka;
Žídek, Lukáš;
Sklenář, Vladimír;
Vondrášek, Jiří

Publication type:

Article

13C-detected NMR experiments for measuring chemical shifts and coupling constants in nucleic acid bases.

Published in:

Journal of Biomolecular NMR, 2007, v. 39, n. 2, p. 153, doi. 10.1007/s10858-007-9184-4

By:

Fiala, Radovan;
Sklenář, Vladimír

Publication type:

Article

1H, 13C, and 15N Resonance Assignment of Bombyx mori Chemosensory Protein 1 (BmorCSP1).

Published in:

Journal of Biomolecular NMR, 2006, v. 36, p. 47, doi. 10.1007/s10858-006-9019-8

By:

Jansen, Séverine;
Žídek, Lukáš;
Löfstedt, Christer;
Picimbon, Jean-François;
Sklenář, Vladimír

Publication type:

Article

Temperature-dependent spectral density analysis applied to monitoring backbone dynamics of major urinary protein-I complexed with the pheromone 2-sec-butyl-4,5-dihydrothiazole *.

Published in:

Journal of Biomolecular NMR, 2004, v. 28, n. 4, p. 369

By:

Křížová, Hana;
Žídek, Lukáš;
Stone, Martin J.;
Novotny, Milos V.;
Sklenář, Vladimír

Publication type:

Article

Refinement of d(GCGAAGC) hairpin structure using one- and two-bond residual dipolar couplings.

Published in:

Journal of Biomolecular NMR, 2002, v. 24, n. 1, p. 1, doi. 10.1023/A:1020632900961

By:

Padrta, Petr;
Štefl, Richard;
Králík, Lukáš;
Žídek, Luk&aauml;&sacron;;
Sklenář, Vladimír

Publication type:

Article

Transverse relaxation optimized triple-resonance NMR experiments for nucleic acids.

Published in:

Journal of Biomolecular NMR, 2000, v. 16, n. 4, p. 291, doi. 10.1023/A:1008388400601

By:

Fiala, Radovan;
Czernek, Ji&rcirc;í;
Sklenář, Vladimír

Publication type:

Article

Phosphorus nmr spectra of natural DNA fragments in the course of the B-to-A conformational transition.

Published in:

Biopolymers, 1986, v. 25, n. 9, p. 1803, doi. 10.1002/bip.360250917

By:

Kypr, Jaroslav;
Sklenář, Vladimír;
Vorlíč-ková, Michaela

Publication type:

Article

The Eighth Central European Conference “Chemistry towards Biology”: Snapshot.

Published in:

Molecules, 2016, v. 21, n. 10, p. 1381, doi. 10.3390/molecules21101381

By:

Perczel, András;
Atanasov, Atanas G.;
Sklenář, Vladimír;
Nováček, Jiří;
Papoušková, Veronika;
Kadeřávek, Pavel;
Žídek, Lukáš;
Kozłowski, Henryk;
Wątły, Joanna;
Hecel, Aleksandra;
Kołkowska, Paulina;
Koča, Jaroslav;
Svobodová-Vařeková, Radka;
Pravda, Lukáš;
Sehnal, David;
Horský, Vladimír;
Geidl, Stanislav;
Enriz, Ricardo D.;
Matějka, Pavel;
Jeništová, Adéla

Publication type:

Article

Structure and NMR properties of 6-substituted-5,6-dihydrobenzo[ c]phenanthridine alkaloids.

Published in:

Journal of Physical Organic Chemistry, 2013, v. 26, n. 10, p. 814, doi. 10.1002/poc.3175

By:

Kadam, Shivaji S.;
Maier, Lukáš;
Šolomek, Tomáš;
Nečas, Marek;
Šmejkal, Karel;
Dostál, Jiří;
Sklenář, Vladimír;
Marek, Radek

Publication type:

Article

Backbone 1H, 13C, and 15N NMR assignment for the inactive form of the retroviral protease of the murine intracisternal A-type particle, inMIA-14 PR.

Published in:

Biomolecular NMR Assignments, 2009, v. 3, n. 2, p. 261, doi. 10.1007/s12104-009-9189-x

By:

Motáčková, Veronika;
Kubíčková, Monika;
Kožíšek, Milan;
Šašková, Klára;
Švec, Martin;
Žídek, Lukáš;
Sklenář, Vladimír

Publication type:

Article

1H, 13C, and 15N resonance assignment of the N-terminal domain of Mason-Pfizer monkey virus capsid protein, CA 1-140.

Published in:

Biomolecular NMR Assignments, 2008, v. 2, n. 1, p. 43, doi. 10.1007/s12104-008-9080-1

By:

Macek, Pavel;
Žídek, Lukáš;
Rumlová, Michaela;
Pichová, Iva;
Sklenář, Vladimír

Publication type:

Article

Works by Sklenář, Vladimír

Structure of Bombyx mori chemosensory protein 1 in solution.

Triple resonance $$^{15}\hbox {N}$$ NMR relaxation experiments for studies of intrinsically disordered proteins.

Erratum to: Impact of nucleic acid self-alignment in a strong magnetic field on the interpretation of indirect spin-spin interactions.

Impact of nucleic acid self-alignment in a strong magnetic field on the interpretation of indirect spin-spin interactions.

Spectral density mapping protocols for analysis of molecular motions in disordered proteins.

Efficient protocol for backbone and side-chain assignments of large, intrinsically disordered proteins: transient secondary structure analysis of 49.2 kDa microtubule associated protein 2c.

Influence of the O-phosphorylation of serine, threonine and tyrosine in proteins on the amidic N chemical shielding anisotropy tensors.

4D Non-uniformly sampled HCBCACON and J(NC)-selective HCBCANCO experiments for the sequential assignment and chemical shift analysis of intrinsically disordered proteins.

5D <sup>13</sup>C-detected experiments for backbone assignment of unstructured proteins with a very low signal dispersion.

Strategy for complete NMR assignment of disordered proteins with highly repetitive sequences based on resolution-enhanced 5D experiments.

S3EPY: a Sparky extension for determination of small scalar couplings from spin-state-selective excitation NMR experiments.

Structure and binding specificity of the receiver domain of sensor histidine kinase CKI1 from Arabidopsis thaliana.

Soluble recombinant CD69 receptors optimized to have an exceptional physical and chemical stability display prolonged circulation and remain intact in the blood of mice.

Formal concept analysis with hierarchically ordered attributes.

Molecular dynamics study of major urinary protein–pheromone interactions: A structural model for ligand-induced flexibility increase

LEVEL OF EMPLOYEES KNOWLEDGE OF COMPANY AND INFORMATION STRATEGY.

Solution structure of the N-terminal domain of Bacillus subtilis δ subunit of RNA polymerase and its classification based on structural homologs.

Corrigendum: Structural Study of the Partially Disordered Full-Length δ Subunit of RNA Polymerase from Bacillus subtilis.

Structural Study of the Partially Disordered Full-Length δ Subunit of RNA Polymerase from Bacillus subtilis.

Nuclear magnetic <sup>13</sup>C<sup>19</sup>F double resonance: Fluorine broad band decoupling.

Carbon-13 chemical shifts of aza-and triaza-adamantane derivatives.

Conformational Dynamics and Antigenicity in the Disordered Malaria Antigen Merozoite Surface Protein 2.

Dispersion Interactions Govern the Strong Thermal Stability of a Protein.

Retro operation on the Trp-cage miniprotein sequence produces an unstructured molecule capable of folding similar to the original only upon 2,2,2-trifluoroethanol addition.

<sup>13</sup>C-detected NMR experiments for measuring chemical shifts and coupling constants in nucleic acid bases.

<sup>1</sup>H, <sup>13</sup>C, and <sup>15</sup>N Resonance Assignment of Bombyx mori Chemosensory Protein 1 (BmorCSP1).

Temperature-dependent spectral density analysis applied to monitoring backbone dynamics of major urinary protein-I complexed with the pheromone 2-sec-butyl-4,5-dihydrothiazole<sup> *</sup>.

Refinement of d(GCGAAGC) hairpin structure using one- and two-bond residual dipolar couplings.

Transverse relaxation optimized triple-resonance NMR experiments for nucleic acids.

Phosphorus nmr spectra of natural DNA fragments in the course of the B-to-A conformational transition.

The Eighth Central European Conference “Chemistry towards Biology”: Snapshot.

Structure and NMR properties of 6-substituted-5,6-dihydrobenzo[ c]phenanthridine alkaloids.

Backbone <sup>1</sup>H, <sup>13</sup>C, and <sup>15</sup>N NMR assignment for the inactive form of the retroviral protease of the murine intracisternal A-type particle, inMIA-14 PR.

<sup>1</sup>H, <sup>13</sup>C, and <sup>15</sup>N resonance assignment of the N-terminal domain of Mason-Pfizer monkey virus capsid protein, CA 1-140.