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Multivariate generalized linear model for genetic pleiotropy.
Published in:
2019
By:
- Schaid, Daniel J;
- Tong, Xingwei;
- Batzler, Anthony;
- Sinnwell, Jason P;
- Qing, Jiang;
- Biernacka, Joanna M
Publication type:
journal article
O3‐06‐02: POLYGENIC SCORE ANALYSIS OF EXONIC VARIANTS IN AN IMMUNE CO‐REGULATORY NETWORK IDENTIFIES NOVEL PROTEIN‐ALTERING VARIANTS THAT ASSOCIATE WITH ALZHEIMER'S DISEASE.
Published in:
Alzheimer's & Dementia: The Journal of the Alzheimer's Association, 2018, v. 14, p. P1025, doi. 10.1016/j.jalz.2018.06.2801
By:
- Reddy, Joseph S.;
- Allen, Mariet;
- Wang, Xue;
- Biernacka, Joanna M.;
- Gregory, Jenkins D.;
- Toral, Shastri M.;
- McDonnell, Shannon K.;
- Sarangi, Vivekananda;
- Sinnwell, Jason P.;
- Asmann, Yan W.;
- Carrasquillo, Minerva M.;
- Pottier, Cyril P.;
- Ren, Yingxue;
- Younkin, Curtis S.;
- Rademakers, Rosa;
- Ross, Owen A.;
- Ertekin-Taner, Nilufer;
- Younkin, Steven G.
Publication type:
Article
Multiplex matrix network analysis of protein complexes in the human TCR signalosome.
Published in:
Science Signaling, 2016, v. 9, n. 439, p. 1, doi. 10.1126/scisignal.aad7279
By:
- Smith, Stephen E. P.;
- Neier, Steven C.;
- Reed, Brendan K.;
- Davis, Tessa R.;
- Sinnwell, Jason P.;
- Eckel-Passow, Jeanette E.;
- Sciallis, Gabriel F.;
- Wieland, Carilyn N.;
- Torgerson, Rochelle R.;
- Gil, Diana;
- Neuhauser, Claudia;
- Schrum, Adam G.
Publication type:
Article
Correction to: Establishing and characterizing patient-derived xenografts using pre-chemotherapy percutaneous biopsy and post-chemotherapy surgical samples from a prospective neoadjuvant breast cancer study.
Published in:
2021
By:
- Yu, Jia;
- Qin, Bo;
- Moyer, Ann M.;
- Sinnwell, Jason P.;
- Thompson, Kevin J.;
- Copland III, John A.;
- Marlow, Laura A.;
- Miller, James L.;
- Yin, Ping;
- Gao, Bowen;
- Minter-Dykhouse, Katherine;
- Tang, Xiaojia;
- McLaughlin, Sarah A.;
- Moreno-Aspitia, Alvaro;
- Schweitzer, Anthony;
- Lu, Yan;
- Hubbard, Jason;
- Northfelt, Donald W.;
- Gray, Richard J.;
- Hunt, Katie
Publication type:
corrected article
Two-stage case–control designs for rare genetic variants.
Published in:
Human Genetics, 2010, v. 127, n. 6, p. 659, doi. 10.1007/s00439-010-0811-x
By:
- Schaid, Daniel J.;
- Sinnwell, Jason P.
Publication type:
Article
Estrogen receptor beta repurposes EZH2 to suppress oncogenic NFκB/p65 signaling in triple negative breast cancer.
Published in:
NPJ Breast Cancer, 2022, v. 8, n. 1, p. 1, doi. 10.1038/s41523-022-00387-0
By:
- Aspros, Kirsten G. M.;
- Carter, Jodi M.;
- Hoskin, Tanya L.;
- Suman, Vera J.;
- Subramaniam, Malayannan;
- Emch, Michael J.;
- Ye, Zhenqing;
- Sun, Zhifu;
- Sinnwell, Jason P.;
- Thompson, Kevin J.;
- Tang, Xiaojia;
- Rodman, Esther P. B.;
- Wang, Xiyin;
- Nelson, Adam W.;
- Chernukhin, Igor;
- Hamdan, Feda H.;
- Bruinsma, Elizabeth S.;
- Carroll, Jason S.;
- Fernandez-Zapico, Martin E.;
- Johnsen, Steven A.
Publication type:
Article
Establishing and characterizing patient-derived xenografts using pre-chemotherapy percutaneous biopsy and post-chemotherapy surgical samples from a prospective neoadjuvant breast cancer study.
Published in:
2017
By:
- Jia Yu;
- Bo Qin;
- Moyer, Ann M.;
- Sinnwell, Jason P.;
- Thompson, Kevin J.;
- Copland III, John A.;
- Marlow, Laura A.;
- Miller, James L.;
- Ping Yin;
- Bowen Gao;
- Minter-Dykhouse, Katherine;
- Xiaojia Tang;
- McLaughlin, Sarah A.;
- Moreno-Aspitia, Alvaro;
- Schweitzer, Anthony;
- Yan Lu;
- Hubbard, Jason;
- Northfelt, Donald W.;
- Gray, Richard J.;
- Hunt, Katie
Publication type:
journal article
Impact of variant-level batch effects on identification of genetic risk factors in large sequencing studies.
Published in:
PLoS ONE, 2021, v. 16, n. 4, p. 1, doi. 10.1371/journal.pone.0249305
By:
- Wickland, Daniel P.;
- Ren, Yingxue;
- Sinnwell, Jason P.;
- Reddy, Joseph S.;
- Pottier, Cyril;
- Sarangi, Vivekananda;
- Carrasquillo, Minerva M.;
- Ross, Owen A.;
- Younkin, Steven G.;
- Ertekin-Taner, Nilüfer;
- Rademakers, Rosa;
- Hudson, Matthew E.;
- Mainzer, Liudmila Sergeevna;
- Biernacka, Joanna M.;
- Asmann, Yan W.
Publication type:
Article
Biomarkers for Predicting Abiraterone Treatment Outcome and Selecting Alternative Therapies in Castration‐Resistant Prostate Cancer.
Published in:
Clinical Pharmacology & Therapeutics, 2022, v. 111, n. 6, p. 1296, doi. 10.1002/cpt.2582
By:
- Qin, Sisi;
- Gao, Huanyao;
- Kim, Wootae;
- Zhang, Huan;
- Gu, Yayun;
- Kalari, Krishna R.;
- Sinnwell, Jason P.;
- Scholz, Jodi A.;
- Xie, Fang;
- Yin, Ping;
- Yu, Jia;
- Qin, Bo;
- Zhuang, Yongxian;
- Wei, Lixuan;
- Tan, Winston;
- Bryce, Alan H.;
- Weinshilboum, Richard M.;
- Wang, Liewei
Publication type:
Article
Luminal androgen receptor breast cancer subtype and investigation of the microenvironment and neoadjuvant chemotherapy response.
Published in:
NAR Cancer, 2022, v. 4, n. 2, p. 1, doi. 10.1093/narcan/zcac018
By:
- Thompson, Kevin J.;
- Leon-Ferre, Roberto A.;
- Sinnwell, Jason P.;
- Zahrieh, David M.;
- Suman, Vera J.;
- Metzger, Filho Otto;
- Asad, Sarah;
- Stover, Daniel G.;
- Carey, Lisa;
- Sikov, William M.;
- Ingle, James N.;
- Liu, Minetta C.;
- Carter, Jodi M.;
- Klee, Eric W.;
- Weinshilboum, Richard M.;
- Boughey, Judy C.;
- Liewei Wang;
- Couch, Fergus J.;
- Goetz, Matthew P.;
- Kalari, Krishna R.
Publication type:
Article
Selection of important variables by statistical learning in genome-wide association analysis.
Published in:
BMC Proceedings, 2009, v. 3, p. 1, doi. 10.1186/1753-6561-3-S7-S7
By:
- Fridley, Brooke L.;
- McDonnell, Shannon K.;
- Rabe, Kari G.;
- Rui Tang;
- Biernacka, Joanna M.;
- Sinnwell, Jason P.;
- Rider, David N.;
- Goode, Ellen L.
Publication type:
Article
Single versus multiple imputation for genotypic data.
Published in:
BMC Proceedings, 2009, v. 3, p. 1, doi. 10.1186/1753-6561-3-S7-S7
By:
- Fridley, Brooke L.;
- McDonnell, Shannon K.;
- Rabe, Kari G.;
- Rui Tang;
- Biernacka, Joanna M.;
- Sinnwell, Jason P.;
- Rider, David N.;
- Goode, Ellen L.
Publication type:
Article
Identification of genes and haplotypes that predict rheumatoid arthritis using random forests.
Published in:
BMC Proceedings, 2009, v. 3, p. 1, doi. 10.1186/1753-6561-3-S7-S68
By:
- Rui Tang;
- Sinnwell, Jason P.;
- Jia Li;
- Rider, David N.;
- de Andrade, Mariza;
- Biernacka, Joanna M.
Publication type:
Article
Assessment of genotype imputation methods.
Published in:
BMC Proceedings, 2009, v. 3, p. 1, doi. 10.1186/1753-6561-3-S7-S5
By:
- Biernacka, Joanna M.;
- Rui Tang;
- Jia Li;
- McDonnell, Shannon K.;
- Rabe, Kari G.;
- Sinnwell, Jason P.;
- Rider, David N.;
- De Andrade, Mariza;
- Goode, Ellen L.;
- Fridley, Brooke L.
Publication type:
Article
Identification of missing variants by combining multiple analytic pipelines.
Published in:
BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2151-0
By:
- Ren, Yingxue;
- Reddy, Joseph S.;
- Pottier, Cyril;
- Sarangi, Vivekananda;
- Tian, Shulan;
- Sinnwell, Jason P.;
- McDonnell, Shannon K.;
- Biernacka, Joanna M.;
- Carrasquillo, Minerva M.;
- Ross, Owen A.;
- Ertekin-Taner, Nilüfer;
- Rademakers, Rosa;
- Hudson, Matthew;
- Mainzer, Liudmila Sergeevna;
- Asmann, Yan W.
Publication type:
Article
Automated mitotic spindle hotspot counts are highly associated with clinical outcomes in systemically untreated early-stage triple-negative breast cancer.
Published in:
NPJ Breast Cancer, 2024, v. 10, n. 1, p. 1, doi. 10.1038/s41523-024-00629-3
By:
- Leon-Ferre, Roberto A.;
- Carter, Jodi M.;
- Zahrieh, David;
- Sinnwell, Jason P.;
- Salgado, Roberto;
- Suman, Vera J.;
- Hillman, David W.;
- Boughey, Judy C.;
- Kalari, Krishna R.;
- Couch, Fergus J.;
- Ingle, James N.;
- Balkenhol, Maschenka;
- Ciompi, Francesco;
- van der Laak, Jeroen;
- Goetz, Matthew P.
Publication type:
Article
Application of Thrombolytic Drugs on Clotted Blood and Bone Marrow Specimens to Generate Usable Cells for Cytogenetic Analyses.
Published in:
Archives of Pathology & Laboratory Medicine, 2011, v. 135, n. 7, p. 915, doi. 10.5858/2010-0085-oar1.1
By:
- St Antoine, Angelique;
- Ketterling, Morgan N.;
- Sukov, William R.;
- Lowman, Josh;
- Knudson, Ryan A.;
- Sinnwell, Jason P.;
- Wiktor, Anne E.;
- Ketterling, Rhett P.
Publication type:
Article
Penalized mediation models for multivariate data.
Published in:
Genetic Epidemiology, 2022, v. 46, n. 1, p. 32, doi. 10.1002/gepi.22433
By:
- Schaid, Daniel J.;
- Dikilitas, Ozan;
- Sinnwell, Jason P.;
- Kullo, Iftikhar J.
Publication type:
Article
Penalized variance components for association of multiple genes with traits.
Published in:
Genetic Epidemiology, 2020, v. 44, n. 7, p. 665, doi. 10.1002/gepi.22340
By:
- Schaid, Daniel J.;
- Sinnwell, Jason P.;
- Larson, Nicholas B.;
- Chen, Jun
Publication type:
Article
Penalized models for analysis of multiple mediators.
Published in:
Genetic Epidemiology, 2020, v. 44, n. 5, p. 408, doi. 10.1002/gepi.22296
By:
- Schaid, Daniel J.;
- Sinnwell, Jason P.
Publication type:
Article
Multiple Genetic Variant Association Testing by Collapsing and Kernel Methods With Pedigree or Population Structured Data.
Published in:
Genetic Epidemiology, 2013, v. 37, n. 5, p. 409, doi. 10.1002/gepi.21727
By:
- Schaid, Daniel J.;
- McDonnell, Shannon K.;
- Sinnwell, Jason P.;
- Thibodeau, Stephen N.
Publication type:
Article
Using the gene ontology to scan multilevel gene sets for associations in genome wide association studies.
Published in:
Genetic Epidemiology, 2012, v. 36, n. 1, p. 3, doi. 10.1002/gepi.20632
By:
- Schaid, Daniel J.;
- Sinnwell, Jason P.;
- Jenkins, Gregory D.;
- McDonnell, Shannon K.;
- Ingle, James N.;
- Kubo, Michiaki;
- Goss, Paul E.;
- Costantino, Joseph P.;
- Wickerham, D. Lawrence;
- Weinshilboum, Richard M.
Publication type:
Article
The kinship2 R Package for Pedigree Data.
Published in:
Human Heredity, 2014, v. 78, n. 2, p. 91, doi. 10.1159/000363105
By:
- Sinnwell, Jason P.;
- Therneau, Terry M.;
- Schaid, Daniel J.
Publication type:
Article
Regression Modeling of Allele Frequencies and Testing Hardy Weinberg Equilibrium.
Published in:
Human Heredity, 2013, v. 74, n. 2, p. 71, doi. 10.1159/000345846
By:
- Schaid, Daniel J.;
- Sinnwell, Jason P.;
- Jenkins, Gregory D.
Publication type:
Article
Regression Modeling of Allele Frequencies and Testing Hardy Weinberg Equilibrium.
Published in:
Human Heredity, 2012, v. 74, n. 2, p. 71, doi. 10.1159/000345846
By:
- Schaid, Daniel J.;
- Sinnwell, Jason P.;
- Jenkins, Gregory D.
Publication type:
Article
Testing Genetic Linkage with Relative Pairs and Covariates by Quasi-Likelihood Score Statistics.
Published in:
Human Heredity, 2007, v. 64, n. 4, p. 220, doi. 10.1159/000103751
By:
- Schaid, Daniel J.;
- Sinnwell, Jason P.;
- Thibodeau, Stephen N.
Publication type:
Article
Tumor Sequencing and Patient-Derived Xenografts in the Neoadjuvant Treatment of Breast Cancer.
Published in:
2017
By:
- Goetz, Matthew P.;
- Kalari, Krishna R.;
- Suman, Vera J.;
- Moyer, Ann M.;
- Jia Yu;
- Visscher, Daniel W.;
- Dockter, Travis J.;
- Vedell, Peter T.;
- Sinnwell, Jason P.;
- Xiaojia Tang;
- Thompson, Kevin J.;
- McLaughlin, Sarah A.;
- Moreno-Aspitia, Alvaro;
- Copland, John A.;
- Northfelt, Donald W.;
- Gray, Richard J.;
- Hunt, Katie;
- Conners, Amy;
- Weinshilboum, Richard;
- Liewei Wang
Publication type:
journal article
Integration of multiomics data shows down regulation of mismatch repair and tubulin pathways in triple-negative chemotherapy-resistant breast tumors.
Published in:
Breast Cancer Research, 2023, v. 25, n. 1, p. 1, doi. 10.1186/s13058-023-01656-x
By:
- Tang, Xiaojia;
- Thompson, Kevin J.;
- Kalari, Krishna R.;
- Sinnwell, Jason P.;
- Suman, Vera J.;
- Vedell, Peter T.;
- McLaughlin, Sarah A.;
- Northfelt, Donald W.;
- Aspitia, Alvaro Moreno;
- Gray, Richard J.;
- Carter, Jodi M.;
- Weinshilboum, Richard;
- Wang, Liewei;
- Boughey, Judy C.;
- Goetz, Matthew P.
Publication type:
Article

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