Works by Singh, Ritambhara

Results: 31

A pitfall for machine learning methods aiming to predict across cell types.

Published in:

Genome Biology, 2020, v. 21, n. 1, p. N.PAG, doi. 10.1186/s13059-020-02177-y

By:

Schreiber, Jacob;
Singh, Ritambhara;
Bilmes, Jeffrey;
Noble, William Stafford

Publication type:

Article

Unveiling the impacts of global uncertainties ITSA Approach for quantifying the impacts of Covid-19 on agricultural trade.

Published in:

Agricultural Economics Research Review, 2024, v. 37, n. 1, p. 35, doi. 10.5958/0974-0279.2024.00005.0

By:

Saxena, Raka;
Sharma, Purushottam;
Pant, Devesh Kumar;
Singh, Ritambhara;
Pant, Satish Chandra;
Joshi, Neha

Publication type:

Article

Estimating Agricultural Sustainability in Gujarat Using Sustainable Livelihood Security Index.

Published in:

Agricultural Economics Research Review, 2017, v. 30, n. 1, p. 125, doi. 10.5958/0974-0279.2017.00011.8

By:

Ghabru, Mahima Gopal;
Devi, Ganga;
Singh, Ritambhara

Publication type:

Article

scNODE: generative model for temporal single cell transcriptomic data prediction.

Published in:

Bioinformatics, 2024, v. 40, p. ii146, doi. 10.1093/bioinformatics/btae393

By:

Zhang, Jiaqi;
Larschan, Erica;
Bigness, Jeremy;
Singh, Ritambhara

Publication type:

Article

scGrapHiC: deep learning-based graph deconvolution for Hi-C using single cell gene expression.

Published in:

Bioinformatics, 2024, v. 40, p. i490, doi. 10.1093/bioinformatics/btae223

By:

Murtaza, Ghulam;
Butaney, Byron;
Wagner, Justin;
Singh, Ritambhara

Publication type:

Article

FastSK: fast sequence analysis with gapped string kernels.

Published in:

Bioinformatics, 2020, v. 36, p. i857, doi. 10.1093/bioinformatics/btaa817

By:

Blakely, Derrick;
Collins, Eamon;
Singh, Ritambhara;
Norton, Andrew;
Lanchantin, Jack;
Qi, Yanjun

Publication type:

Article

Correction: Discovery of CTCF-Sensitive Cis-Spliced Fusion RNAs between Adjacent Genes in Human Prostate Cells.

Published in:

2015

By:

Qin, Fujun;
Song, Zhenguo;
Babiceanu, Mihaela;
Song, Yansu;
Facemire, Loryn;
Singh, Ritambhara;
Adli, Mazhar;
Li, Hui

Publication type:

Correction Notice

Discovery of CTCF-Sensitive Cis-Spliced Fusion RNAs between Adjacent Genes in Human Prostate Cells.

Published in:

PLoS Genetics, 2015, v. 11, n. 2, p. 1, doi. 10.1371/journal.pgen.1005001

By:

Qin, Fujun;
Song, Zhenguo;
Babiceanu, Mihaela;
Song, Yansu;
Facemire, Loryn;
Singh, Ritambhara;
Adli, Mazhar;
Li, Hui

Publication type:

Article

Optimal transport reveals dynamic gene regulatory networks via gene velocity estimation.

Published in:

PLoS Computational Biology, 2025, v. 21, n. 5, p. 1, doi. 10.1371/journal.pcbi.1012476

By:

Zhao, Wenjun;
Larschan, Erica;
Sandstede, Björn;
Singh, Ritambhara

Publication type:

Article

Clinical capability of modern brain tumor segmentation models.

Published in:

Medical Physics, 2023, v. 50, n. 8, p. 4943, doi. 10.1002/mp.16321

By:

Berkley, Adam;
Saueressig, Camillo;
Shukla, Utkarsh;
Chowdhury, Imran;
Munoz‐Gauna, Anthony;
Shehu, Olalekan;
Singh, Ritambhara;
Munbodh, Reshma

Publication type:

Article

Retrieval-Based Diagnostic Decision Support: Mixed Methods Study.

Published in:

JMIR Medical Informatics, 2024, v. 12, p. 1, doi. 10.2196/50209

By:

Abdullahi, Tassallah;
Mercurio, Laura;
Singh, Ritambhara;
Eickhoff, Carsten

Publication type:

Article

Learning to Make Rare and Complex Diagnoses With Generative AI Assistance: Qualitative Study of Popular Large Language Models.

Published in:

JMIR Medical Education, 2024, v. 10, p. 1, doi. 10.2196/51391

By:

Abdullahi, Tassallah;
Singh, Ritambhara;
Eickhoff, Carsten

Publication type:

Article

An agribusiness perspective of demonetization in central region of the state of Gujarat in India.

Published in:

Journal of Economic Structures, 2020, v. 9, n. 1, p. N.PAG, doi. 10.1186/s40008-020-00227-z

By:

Singh, Ritambhara;
Prajapati, Mahesh R.

Publication type:

Article

DeepDiff: DEEP-learning for predicting DIFFerential gene expression from histone modifications.

Published in:

Bioinformatics, 2018, v. 34, n. 17, p. i891, doi. 10.1093/bioinformatics/bty612

By:

Sekhon, Arshdeep;
Singh, Ritambhara;
Qi, Yanjun

Publication type:

Article

DeepChrome: deep-learning for predicting gene expression from histone modifications.

Published in:

Bioinformatics, 2016, v. 32, n. 17, p. i639, doi. 10.1093/bioinformatics/btw427

By:

Singh, Ritambhara;
Lanchantin, Jack;
Robins, Gabriel;
Yanjun Qi

Publication type:

Article

Value Chain Analysis of Chickpea in Kurnool District of Andhra Pradesh .

Published in:

Environment & Ecology, 2022, v. 40, n. 2A, p. 491

By:

Reddy, K. K.;
Singh, K. M.;
Ahmad, Nasim;
Singh, Ritambhara

Publication type:

Article

Multimodal attention-based deep learning for Alzheimer's disease diagnosis.

Published in:

2022

By:

Golovanevsky, Michal;
Eickhoff, Carsten;
Singh, Ritambhara

Publication type:

journal article

Memory-efficient semantic segmentation of large microscopy images using graph-based neural networks.

Published in:

Microscopy, 2024, v. 73, n. 3, p. 275, doi. 10.1093/jmicro/dfad049

By:

Jain, Atishay;
Laidlaw, David H;
Bajcsy, Peter;
Singh, Ritambhara

Publication type:

Article

Single-cell landscape of nuclear configuration and gene expression during stem cell differentiation and X inactivation.

Published in:

Genome Biology, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s13059-021-02432-w

By:

Bonora, Giancarlo;
Ramani, Vijay;
Singh, Ritambhara;
Fang, He;
Jackson, Dana L.;
Srivatsan, Sanjay;
Qiu, Ruolan;
Lee, Choli;
Trapnell, Cole;
Shendure, Jay;
Duan, Zhijun;
Deng, Xinxian;
Noble, William S.;
Disteche, Christine M.

Publication type:

Article

Comparative analysis of animal lifespan.

Published in:

GeroScience, 2024, v. 46, n. 1, p. 171, doi. 10.1007/s11357-023-00984-2

By:

Riddle, Nicole C.;
Biga, Peggy R.;
Bronikowski, Anne M.;
Walters, James R.;
Wilkinson, Gerald S.;
IISAGE Consortium;
Duan, Jingyue Ellie;
Gamble, Anthony;
Larschan, Erica;
Meisel, Richard P.;
Singh, Ritambhara;
Webb, Ashley

Publication type:

Article

Organic food consumption: A bibliometric–content analysis.

Published in:

2024

By:

Pant, Satish Chandra;
Saxena, Raka;
Pant, Devesh Kumar;
Singh, Ritambhara

Publication type:

Literature Review

Live cell imaging of low- and non-repetitive chromosome loci using CRISPR-Cas9.

Published in:

Nature Communications, 2017, v. 8, n. 3, p. 14725, doi. 10.1038/ncomms14725

By:

Qin, Peiwu;
Parlak, Mahmut;
Kuscu, Cem;
Bandaria, Jigar;
Mir, Mustafa;
Szlachta, Karol;
Singh, Ritambhara;
Darzacq, Xavier;
Yildiz, Ahmet;
Adli, Mazhar

Publication type:

Article

A constrained $$\ell $$ 1 minimization approach for estimating multiple sparse Gaussian or nonparanormal graphical models.

Published in:

Machine Learning, 2017, v. 106, n. 9-10, p. 1381, doi. 10.1007/s10994-017-5635-7

By:

Wang, Beilun;
Singh, Ritambhara;
Qi, Yanjun

Publication type:

Article

A constrained $$\ell $$ 1 minimization approach for estimating multiple sparse Gaussian or nonparanormal graphical models.

Published in:

Machine Learning, 2017, v. 106, n. 9-10, p. 1381, doi. 10.1007/s10994-017-5635-7

By:

Wang, Beilun;
Singh, Ritambhara;
Qi, Yanjun

Publication type:

Article

TIMEOR: a web-based tool to uncover temporal regulatory mechanisms from multi-omics data.

Published in:

Nucleic Acids Research, 2021, v. 49, n. W1, p. W641, doi. 10.1093/nar/gkab384

By:

Conard, Ashley Mae;
Goodman, Nathaniel;
Hu, Yanhui;
Perrimon, Norbert;
Singh, Ritambhara;
Lawrence, Charles;
Larschan, Erica

Publication type:

Article

Cas9-chromatin binding information enables more accurate CRISPR off-target prediction.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 18, p. 1, doi. 10.1093/nar/gkv575

By:

Singh, Ritambhara;
Kuscu, Cem;
Quinlan, Aaron;
Yanjun Qi;
Adli, Mazhar

Publication type:

Article

A Comprehensive Evaluation of Generalizability of Deep Learning-Based Hi-C Resolution Improvement Methods.

Published in:

Genes, 2024, v. 15, n. 1, p. 54, doi. 10.3390/genes15010054

By:

Murtaza, Ghulam;
Jain, Atishay;
Hughes, Madeline;
Wagner, Justin;
Singh, Ritambhara

Publication type:

Article

A pan-tissue DNA-methylation epigenetic clock based on deep learning.

Published in:

NPJ Aging, 2022, v. 8, n. 1, p. 1, doi. 10.1038/s41514-022-00085-y

By:

de Lima Camillo, Lucas Paulo;
Lapierre, Louis R.;
Singh, Ritambhara

Publication type:

Article

An automated COVID-19 triage pipeline using artificial intelligence based on chest radiographs and clinical data.

Published in:

NPJ Digital Medicine, 2022, v. 5, n. 1, p. 1, doi. 10.1038/s41746-021-00546-w

By:

Kim, Chris K.;
Choi, Ji Whae;
Jiao, Zhicheng;
Wang, Dongcui;
Wu, Jing;
Yi, Thomas Y.;
Halsey, Kasey C.;
Eweje, Feyisope;
Tran, Thi My Linh;
Liu, Chang;
Wang, Robin;
Sollee, John;
Hsieh, Celina;
Chang, Ken;
Yang, Fang-Xue;
Singh, Ritambhara;
Ou, Jie-Lin;
Huang, Raymond Y.;
Feng, Cai;
Feldman, Michael D.

Publication type:

Article

Benefits of new generation farmers' collectives: case reflection from an eastern state of India.

Published in:

Development in Practice, 2024, v. 34, n. 6, p. 736, doi. 10.1080/09614524.2024.2345733

By:

Das, Soumyadeep;
Singh, Ritambhara

Publication type:

Article

Genome-wide analysis reveals characteristics of off-target sites bound by the Cas9 endonuclease.

Published in:

Nature Biotechnology, 2014, v. 32, n. 7, p. 677, doi. 10.1038/nbt.2916

By:

Kuscu, Cem;
Arslan, Sevki;
Singh, Ritambhara;
Thorpe, Jeremy;
Adli, Mazhar

Publication type:

Article