Works by Sillanpää, Mikko J.

Results: 79

Robustness of Bayesian Multilocus Association Models to Cryptic Relatedness.

Published in:

Annals of Human Genetics, 2012, v. 76, n. 6, p. 510, doi. 10.1111/j.1469-1809.2012.00729.x

By:

Kärkkäinen, Hanni P.;
Sillanpää, Mikko J.

Publication type:

Article

Replication in genetic studies of complex traits.

Published in:

Annals of Human Genetics, 2004, v. 68, n. 6, p. 646, doi. 10.1046/j.1529-8817.2004.00122.x

By:

Sillanpää, Mikko J.;
Auranen, Kari

Publication type:

Article

NeuralLasso: Neural Networks Meet Lasso in Genomic Prediction.

Published in:

Frontiers in Plant Science, 2022, v. 13, p. 1, doi. 10.3389/fpls.2022.800161

By:

Mathew, Boby;
Hauptmann, Andreas;
Léon, Jens;
Sillanpää, Mikko J.

Publication type:

Article

Estimating multilevel regional variation in excess mortality of cancer patients using integrated nested Laplace approximation.

Published in:

2019

By:

Seppä, Karri;
Rue, Håvard;
Hakulinen, Timo;
Läärä, Esa;
Sillanpää, Mikko J.;
Pitkäniemi, Janne

Publication type:

journal article

Robust multi-outcome regression with correlated covariate blocks using fused LAD-lasso.

Published in:

Journal of Applied Statistics, 2025, v. 52, n. 5, p. 1081, doi. 10.1080/02664763.2024.2414346

By:

Möttönen, Jyrki;
Lähderanta, Tero;
Salonen, Janne;
Sillanpää, Mikko J.

Publication type:

Article

Dissecting the genetic architecture of quantitative traits using genome‐wide identity‐by‐descent sharing.

Published in:

Molecular Ecology, 2024, v. 33, n. 6, p. 1, doi. 10.1111/mec.17299

By:

Fraimout, Antoine;
Guillaume, Frédéric;
Li, Zitong;
Sillanpää, Mikko J.;
Rastas, Pasi;
Merilä, Juha

Publication type:

Article

Use of Wishart Prior and Simple Extensions for Sparse Precision Matrix Estimation.

Published in:

PLoS ONE, 2016, v. 11, n. 2, p. 1, doi. 10.1371/journal.pone.0148171

By:

Kuismin, Markku;
Sillanpää, Mikko J.

Publication type:

Article

Prediction of complex human diseases from pathway-focused candidate markers by joint estimation of marker effects: case of chronic fatigue syndrome.

Published in:

Human Genomics, 2015, v. 9, n. 1, p. 1, doi. 10.1186/s40246-015-0030-6

By:

Bhattacharjee, Madhuchhanda;
Rajeevan, Mangalathu S.;
Sillanpää, Mikko J.

Publication type:

Article

Estimating Modifying Effect of Age on Genetic and Environmental Variance Components in Twin Models.

Published in:

Genetics, 2016, v. 202, n. 4, p. 1313, doi. 10.1534/genetics.115.183905

By:

Liang He;
Sillanpää, Mikko J.;
Silventoinen, Karri;
Kaprio, Jaakko;
Pitkäniemi, Janne

Publication type:

Article

An Efficient Genome-Wide Multilocus Epistasis Search.

Published in:

Genetics, 2015, v. 201, n. 3, p. 865, doi. 10.1534/genetics.115.182444

By:

Kärkkäinen, Hanni P.;
Zitong Li;
Sillanpää, Mikko J.

Publication type:

Article

A Bayesian Nonparametric Approach for Mapping Dynamic Quantitative Traits.

Published in:

Genetics, 2013, v. 194, n. 4, p. 997, doi. 10.1534/genetics.113.152736

By:

Zitong Li;
Sillanpää, Mikko J.

Publication type:

Article

A Decision Rule for Quantitative Trait Locus Detection Under the Extended Bayesian LASSO Model.

Published in:

Genetics, 2012, v. 192, n. 4, p. 1483, doi. 10.1534/genetics.111.130278

By:

Mutshinda, Crispin M.;
Sillanpää, Mikko J.

Publication type:

Article

Back to Basics for Bayesian Model Building in Genomic Selection.

Published in:

Genetics, 2012, v. 191, n. 3, p. 969, doi. 10.1534/genetics.112.139014

By:

Kärkkäinen, Hanni P.;
Sillanpää, Mikko J.

Publication type:

Article

Estimation of Quantitative Trait Locus Effects with Epistasis by Variational Bayes Algorithms.

Published in:

Genetics, 2012, v. 190, n. 1, p. 231, doi. 10.1534/genetics.111.134866

By:

Zitong Li;
Sillanpää, Mikko J.

Publication type:

Article

Bayesian Inference of Genetic Parameters Based on Conditional Decompositions of Multivariate Normal Distributions.

Published in:

Genetics, 2010, v. 185, n. 2, p. 645, doi. 10.1534/genetics.110.114249

By:

Hallander, Jon;
Waldmann, Patrik;
Chunkao Wang;
Sillanpää, Mikko J.

Publication type:

Article

Bayesian Quantitative Trait Locus Mapping Based on Reconstruction of Recent Genetic Histories.

Published in:

Genetics, 2009, v. 183, n. 2, p. 709, doi. 10.1534/genetics.109.104190

By:

Gasbarra, Dario;
Pirinen, Matti;
Sillanpää, Mikko J.;
Arjas, Elja

Publication type:

Article

Efficient Markov Chain Monte Carlo Implementation of Bayesian Analysis of Additive and Dominance Genetic Variances in Noninbred Pedigrees.

Published in:

Genetics, 2008, v. 179, n. 2, p. 1101, doi. 10.1534/genetics.107.084160

By:

Waldmann, Patrik;
Hallander, Jon;
Hoti, Fabian;
Sillanpää, Mikko J.

Publication type:

Article

Mapping Quantitative Trait Loci From a Single-Tail Sample of the Phenotype Distribution Including Survival Data.

Published in:

Genetics, 2007, v. 177, n. 4, p. 2361, doi. 10.1534/genetics.107.081299

By:

Sillanpää, Mikko J.;
Hoti, Fabian

Publication type:

Article

Association Mapping of Complex Trait Loci With Context-Dependent Effects and Unknown Context Variable.

Published in:

Genetics, 2006, v. 174, n. 3, p. 1597, doi. 10.1534/genetics.106.061275

By:

Sillanpää, Mikko J.;
Bhattacharjee, Madhuchhanda

Publication type:

Article

Bayesian Association-Based Fine Mapping in Small Chromosomal Segments.

Published in:

Genetics, 2005, v. 169, n. 1, p. 427, doi. 10.1534/genetics.104.032680

By:

Sillanpää, Mikko J.;
Bhattacharjee, Madhuchhanda

Publication type:

Article

Comment on "On the Metropolis-Hastings Acceptance Probability to Add or Drop a Quantitative Trait Locus in Markov Chain Monte Carlo-Based Bayesian Analyses.

Published in:

2004

By:

Sillanpää, Mikko J.;
Gasbarra, Dario;
Arjas, Elja

Publication type:

Letter

Bayesian Analysis of Genetic Differentiation Between Populations.

Published in:

Genetics, 2003, v. 163, n. 1, p. 367, doi. 10.1093/genetics/163.1.367

By:

Corander, Jukka;
Waldmann, Patrik;
Sillanpää, Mikko J.

Publication type:

Article

Dispersal in a house sparrow metapopulation: An integrative case study of genetic assignment calibrated with ecological data and pedigree information.

Published in:

Molecular Ecology, 2021, v. 30, n. 19, p. 4740, doi. 10.1111/mec.16083

By:

Saatoglu, Dilan;
Niskanen, Alina K.;
Kuismin, Markku;
Ranke, Peter S.;
Hagen, Ingerid J.;
Araya‐Ajoy, Yimen G.;
Kvalnes, Thomas;
Pärn, Henrik;
Rønning, Bernt;
Ringsby, Thor Harald;
Sæther, Bernt‐Erik;
Husby, Arild;
Sillanpää, Mikko J.;
Jensen, Henrik

Publication type:

Article

Estimation of covariance and precision matrix, network structure, and a view toward systems biology.

Published in:

WIREs: Computational Statistics, 2017, v. 9, n. 6, p. n/a, doi. 10.1002/wics.1415

By:

Kuismin, Markku O.;
Sillanpää, Mikko J.

Publication type:

Article

Mobile road weather sensor calibration by sensor fusion and linear mixed models.

Published in:

PLoS ONE, 2019, v. 14, n. 2, p. 1, doi. 10.1371/journal.pone.0211702

By:

Lovén, Lauri;
Karsisto, Virve;
Järvinen, Heikki;
Sillanpää, Mikko J.;
Leppänen, Teemu;
Peltonen, Ella;
Pirttikangas, Susanna;
Riekki, Jukka

Publication type:

Article

Impact of residual covariance structures on genomic prediction ability in multi-environment trials.

Published in:

PLoS ONE, 2018, v. 13, n. 7, p. 1, doi. 10.1371/journal.pone.0201181

By:

Mathew, Boby;
Léon, Jens;
Sillanpää, Mikko J.

Publication type:

Article

Association mapping of local adaptation traits of Scots pine in a European wide population sample.

Published in:

2011

By:

Knürr, Timo;
Kujala, Sonja;
Sillanpää, Mikko J;
Avia, Komlan;
Vaattovaara, Aleksia;
Kärkkäinen, Katri;
Savolainen, Outi

Publication type:

Abstract

Integrated nested Laplace approximation inference and cross-validation to tune variance components in estimation of breeding value.

Published in:

Molecular Breeding, 2015, v. 35, n. 3, p. 1, doi. 10.1007/s11032-015-0248-y

By:

Mathew, Boby;
Léon, Jens;
Sillanpää, Mikko J.

Publication type:

Article

Flanking SNP markers for vicine–convicine concentration in faba bean (Vicia faba L.)

Published in:

Molecular Breeding, 2015, v. 35, n. 1, p. 1, doi. 10.1007/s11032-015-0214-8

By:

Khazaei, Hamid;
O’Sullivan, Donal M.;
Jones, Huw;
Pitts, Nicholas;
Sillanpää, Mikko J.;
Pärssinen, Pertti;
Manninen, Outi;
Stoddard, Frederick L.

Publication type:

Article

Impact of prior specifications in a shrinkage-inducing Bayesian model for quantitative trait mapping and genomic prediction.

Published in:

Genetics Selection Evolution, 2013, v. 45, p. 1, doi. 10.1186/1297-9686-45-24

By:

Timo Knürr;
Läärä, Esa;
Sillanpää, Mikko J.

Publication type:

Article

BAPS 2: enhanced possibilities for the analysis of genetic population structure.

Published in:

Bioinformatics, 2004, v. 20, n. 15, p. 2363, doi. 10.1093/bioinformatics/bth250

By:

Jukka Corander;
Patrik Waldmann;
Pekka Marttinen;
Mikko J. Sillanpää

Publication type:

Article

Principal component analysis revisited: fast multitrait genetic evaluations with smooth convergence.

Published in:

G3: Genes | Genomes | Genetics, 2024, v. 14, n. 12, p. 1, doi. 10.1093/g3journal/jkae228

By:

Ahlinder, Jon;
Hall, David;
Suontama, Mari;
Sillanpää, Mikko J

Publication type:

Article

Sub-sampling graph neural networks for genomic prediction of quantitative phenotypes.

Published in:

G3: Genes | Genomes | Genetics, 2024, v. 14, n. 11, p. 1, doi. 10.1093/g3journal/jkae216

By:

Kihlman, Ragini;
Launonen, Ilkka;
Sillanpää, Mikko J;
Waldmann, Patrik

Publication type:

Article

Gap-com: general model selection criterion for sparse undirected gene networks with nontrivial community structure.

Published in:

G3: Genes | Genomes | Genetics, 2022, v. 12, n. 2, p. 1, doi. 10.1093/g3journal/jkab437

By:

Kuismin, Markku;
Dodangeh, Fatemeh;
Sillanpää, Mikko J.

Publication type:

Article

Importance of correcting genomic relationships in single-locus QTL mapping model with an advanced backcross population.

Published in:

G3: Genes | Genomes | Genetics, 2021, v. 11, n. 6, p. 1, doi. 10.1093/g3journal/jkab105

By:

Mathew, Boby;
Léon, Jens;
Dadshani, Said;
Pillen, Klaus;
Sillanpää, Mikko J.;
Naz, Ali Ahmad

Publication type:

Article

CONE: Community Oriented Network Estimation Is a Versatile Framework for Inferring Population Structure in Large-Scale Sequencing Data.

Published in:

G3: Genes | Genomes | Genetics, 2017, v. 7, n. 10, p. 3359, doi. 10.1534/g3.117.300131

By:

Kuismin, Markku O.;
Ahlinder, Jon;
Sillanpää, Mikko J.

Publication type:

Article

Estimating genealogies from linked marker data: a Bayesian approach.

Published in:

BMC Bioinformatics, 2007, v. 8, p. 411, doi. 10.1186/1471-2105-8-411

By:

Gasbarra, Dario;
Pirinen, Matti;
Sillanpää, Mikko J.;
Arjas, Elja

Publication type:

Article

Model guided trait-specific co-expression network estimation as a new perspective for identifying molecular interactions and pathways.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 5, p. 1, doi. 10.1371/journal.pcbi.1008960

By:

Kontio, Juho A. J.;
Pyhäjärvi, Tanja;
Sillanpää, Mikko J.

Publication type:

Article

BELMM: Bayesian model selection and random walk smoothing in time-series clustering.

Published in:

Bioinformatics, 2023, v. 39, n. 11, p. 1, doi. 10.1093/bioinformatics/btad686

By:

Sarala, Olli;
Pyhäjärvi, Tanja;
Sillanpää, Mikko J

Publication type:

Article

Genetic fine-mapping from summary data using a nonlocal prior improves the detection of multiple causal variants.

Published in:

Bioinformatics, 2023, v. 39, n. 7, p. 1, doi. 10.1093/bioinformatics/btad396

By:

Karhunen, Ville;
Launonen, Ilkka;
Järvelin, Marjo-Riitta;
Sebert, Sylvain;
Sillanpää, Mikko J

Publication type:

Article

MCPeSe: Monte Carlo penalty selection for graphical lasso.

Published in:

Bioinformatics, 2021, v. 37, n. 5, p. 726, doi. 10.1093/bioinformatics/btaa734

By:

Kuismin, Markku;
Sillanpää, Mikko J

Publication type:

Article

Estimation of dynamic SNP-heritability with Bayesian Gaussian process models.

Published in:

Bioinformatics, 2020, v. 36, n. 12, p. 3795, doi. 10.1093/bioinformatics/btaa199

By:

Arjas, Arttu;
Hauptmann, Andreas;
Sillanpää, Mikko J

Publication type:

Article

A Gaussian process model and Bayesian variable selection for mapping function-valued quantitative traits with incomplete phenotypic data.

Published in:

Bioinformatics, 2019, v. 35, n. 19, p. 3684, doi. 10.1093/bioinformatics/btz164

By:

Vanhatalo, Jarno;
Li, Zitong;
Sillanpää, Mikko J

Publication type:

Article

Genetic assignment of individuals to source populations using network estimation tools.

Published in:

Methods in Ecology & Evolution, 2020, v. 11, n. 2, p. 333, doi. 10.1111/2041-210X.13323

By:

Kuismin, Markku;
Saatoglu, Dilan;
Niskanen, Alina K.;
Jensen, Henrik;
Sillanpää, Mikko J.;
Gaggiotti, Oscar

Publication type:

Article

Rapid Bayesian inference of heritability in animal models without convergence problems.

Published in:

Methods in Ecology & Evolution, 2013, v. 4, n. 11, p. 1037, doi. 10.1111/2041-210X.12113

By:

Ahlinder, Jon;
Sillanpää, Mikko J.;
Hadfield, Jarod

Publication type:

Article

Modelling old‐age retirement: An adaptive multi‐outcome LAD‐lasso regression approach.

Published in:

International Social Security Review, 2022, v. 75, n. 1, p. 3, doi. 10.1111/issr.12287

By:

Lähderanta, Tero;
Salonen, Janne;
Möttönen, Jyrki;
Sillanpää, Mikko J.

Publication type:

Article

Editorial.

Published in:

2024

By:

Kulathinal, Sangita;
Peltonen, Jaakko;
Sillanpää, Mikko J.

Publication type:

Editorial

Editorial.

Published in:

2024

By:

Kulathinal, Sangita;
Peltonen, Jaakko;
Sillanpää, Mikko J.

Publication type:

Editorial

Professor Elja Arjas: A prominent figure in establishing statistics in Finland.

Published in:

Scandinavian Journal of Statistics, 2023, v. 50, n. 1, p. 1, doi. 10.1111/sjos.12631

By:

Kulathinal, Sangita;
Peltonen, Jaakko;
Sillanpää, Mikko J.

Publication type:

Article

Editorial.

Published in:

Scandinavian Journal of Statistics, 2022, v. 49, n. 1, p. 1, doi. 10.1111/sjos.12579

By:

Kulathinal, Sangita;
Peltonen, Jaakko;
Sillanpää, Mikko J.

Publication type:

Article