Works by Sillanpää, Mikko J.

Results: 79

Hierarchical Bayesian Model for Rare Variant Association Analysis Integrating Genotype Uncertainty in Human Sequence Data.

Published in:

Genetic Epidemiology, 2015, v. 39, n. 2, p. 89, doi. 10.1002/gepi.21871

By:

He, Liang;
Pitkäniemi, Janne;
Sarin, Antti‐Pekka;
Salomaa, Veikko;
Sillanpää, Mikko J.;
Ripatti, Samuli

Publication type:

Article

Bayesian Latent Variable Collapsing Model for Detecting Rare Variant Interaction Effect in Twin Study.

Published in:

Genetic Epidemiology, 2014, v. 38, n. 4, p. 310, doi. 10.1002/gepi.21804

By:

He, Liang;
Sillanpää, Mikko J.;
Ripatti, Samuli;
Pitkäniemi, Janne

Publication type:

Article

Bayesian analysis of multilocus association in quantitative and qualitative traits.

Published in:

Genetic Epidemiology, 2003, v. 25, n. 2, p. 122, doi. 10.1002/gepi.10257

By:

Riika Kilpikari;
Mikko J. Sillanpää

Publication type:

Article

A note on estimating the posterior density of a quantitative trait locus from a Markov chain Monte Carlo sample.

Published in:

Genetic Epidemiology, 2002, v. 22, n. 4, p. 369, doi. 10.1002/gepi.01125

By:

Hoti, Fabian J.;
Sillanpää, Mikko J.;
Holmström, Lasse

Publication type:

Article

Bayesian oligogenic analysis of quantitative and qualitative traits in general pedigrees.

Published in:

Genetic Epidemiology, 2001, v. 21, n. 3, p. 224, doi. 10.1002/gepi.1031

By:

Uimari, Pekka;
Sillanpää, Mikko J.

Publication type:

Article

Bayesian Association Mapping for Quantitative Traits in a Mixture of Two Populations.

Published in:

Genetic Epidemiology, 2001, v. 21, p. S692, doi. 10.1002/gepi.2001.21.s1.s692

By:

Sillanpää, Mikko J.;
Kilpikari, Riika;
Ripatti, Samuli;
Onkamo, Päivi;
Uimari, Pekka

Publication type:

Article

Joint Modeling of Genetic Association and Population Stratification Using Latent Class Models.

Published in:

Genetic Epidemiology, 2001, v. 21, p. S409, doi. 10.1002/gepi.2001.21.s1.s409

By:

Ripatti, Samuli;
Pitkäniemi, Janne;
Sillanpää, Mikko J.

Publication type:

Article

Impact of prior specifications in a shrinkage-inducing Bayesian model for quantitative trait mapping and genomic prediction.

Published in:

Genetics Selection Evolution, 2013, v. 45, p. 1, doi. 10.1186/1297-9686-45-24

By:

Timo Knürr;
Läärä, Esa;
Sillanpää, Mikko J.

Publication type:

Article

Genome‐wide association study identified novel candidate loci affecting wood formation in Norway spruce.

Published in:

Plant Journal, 2019, v. 100, n. 1, p. 83, doi. 10.1111/tpj.14429

By:

Baison, John;
Vidalis, Amaryllis;
Zhou, Linghua;
Chen, Zhi‐Qiang;
Li, Zitong;
Sillanpää, Mikko J.;
Bernhardsson, Carolina;
Scofield, Douglas;
Forsberg, Nils;
Grahn, Thomas;
Olsson, Lars;
Karlsson, Bo;
Wu, Harry;
Ingvarsson, Pär K.;
Lundqvist, Sven‐Olof;
Niittylä, Totte;
García‐Gil, M Rosario

Publication type:

Article

BELMM: Bayesian model selection and random walk smoothing in time-series clustering.

Published in:

Bioinformatics, 2023, v. 39, n. 11, p. 1, doi. 10.1093/bioinformatics/btad686

By:

Sarala, Olli;
Pyhäjärvi, Tanja;
Sillanpää, Mikko J

Publication type:

Article

Genetic fine-mapping from summary data using a nonlocal prior improves the detection of multiple causal variants.

Published in:

Bioinformatics, 2023, v. 39, n. 7, p. 1, doi. 10.1093/bioinformatics/btad396

By:

Karhunen, Ville;
Launonen, Ilkka;
Järvelin, Marjo-Riitta;
Sebert, Sylvain;
Sillanpää, Mikko J

Publication type:

Article

MCPeSe: Monte Carlo penalty selection for graphical lasso.

Published in:

Bioinformatics, 2021, v. 37, n. 5, p. 726, doi. 10.1093/bioinformatics/btaa734

By:

Kuismin, Markku;
Sillanpää, Mikko J

Publication type:

Article

Reducing bias and mitigating the influence of excess of zeros in regression covariates with multi-outcome adaptive LAD-lasso.

Published in:

Communications in Statistics: Theory & Methods, 2024, v. 53, n. 13, p. 4730, doi. 10.1080/03610926.2023.2189059

By:

Möttönen, Jyrki;
Lähderanta, Tero;
Salonen, Janne;
Sillanpää, Mikko J.

Publication type:

Article

Genetic analysis of complex traits via Bayesian variable selection: the utility of a mixture of uniform priors.

Published in:

Genetics Research, 2011, v. 93, n. 4, p. 303, doi. 10.1017/S0016672311000164

By:

KNÜRR, TIMO;
LÄÄRÄ, ESA;
SILLANPÄÄ, MIKKO J.

Publication type:

Article

An application of Bayesian QTL mapping to early development in double haploid lines of rainbow trout including environmental effects.

Published in:

Genetics Research, 2005, v. 86, n. 3, p. 209, doi. 10.1017/s0016672305007871

By:

VICTOR MARTINEZ;
GARY THORGAARD;
BARRIE ROBISON;
MIKKO J. SILLANPÄÄ

Publication type:

Article

Estimation of covariance and precision matrix, network structure, and a view toward systems biology.

Published in:

WIREs: Computational Statistics, 2017, v. 9, n. 6, p. n/a, doi. 10.1002/wics.1415

By:

Kuismin, Markku O.;
Sillanpää, Mikko J.

Publication type:

Article

Association mapping of local adaptation traits of Scots pine in a European wide population sample.

Published in:

2011

By:

Knürr, Timo;
Kujala, Sonja;
Sillanpää, Mikko J;
Avia, Komlan;
Vaattovaara, Aleksia;
Kärkkäinen, Katri;
Savolainen, Outi

Publication type:

Abstract

Robustness of Bayesian Multilocus Association Models to Cryptic Relatedness.

Published in:

Annals of Human Genetics, 2012, v. 76, n. 6, p. 510, doi. 10.1111/j.1469-1809.2012.00729.x

By:

Kärkkäinen, Hanni P.;
Sillanpää, Mikko J.

Publication type:

Article

Replication in genetic studies of complex traits.

Published in:

Annals of Human Genetics, 2004, v. 68, n. 6, p. 646, doi. 10.1046/j.1529-8817.2004.00122.x

By:

Sillanpää, Mikko J.;
Auranen, Kari

Publication type:

Article

Editorial.

Published in:

2024

By:

Kulathinal, Sangita;
Peltonen, Jaakko;
Sillanpää, Mikko J.

Publication type:

Editorial

Editorial.

Published in:

2024

By:

Kulathinal, Sangita;
Peltonen, Jaakko;
Sillanpää, Mikko J.

Publication type:

Editorial

Professor Elja Arjas: A prominent figure in establishing statistics in Finland.

Published in:

Scandinavian Journal of Statistics, 2023, v. 50, n. 1, p. 1, doi. 10.1111/sjos.12631

By:

Kulathinal, Sangita;
Peltonen, Jaakko;
Sillanpää, Mikko J.

Publication type:

Article

Editorial.

Published in:

Scandinavian Journal of Statistics, 2022, v. 49, n. 1, p. 1, doi. 10.1111/sjos.12579

By:

Kulathinal, Sangita;
Peltonen, Jaakko;
Sillanpää, Mikko J.

Publication type:

Article

BAPS 2: enhanced possibilities for the analysis of genetic population structure.

Published in:

Bioinformatics, 2004, v. 20, n. 15, p. 2363, doi. 10.1093/bioinformatics/bth250

By:

Jukka Corander;
Patrik Waldmann;
Pekka Marttinen;
Mikko J. Sillanpää

Publication type:

Article

Diagnostic performance of attenuated total reflection Fourier-transform infrared spectroscopy for detecting COVID-19 from routine nasopharyngeal swab samples.

Published in:

Scientific Reports, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41598-022-24751-z

By:

Heino, Helinä;
Rieppo, Lassi;
Männistö, Tuija;
Sillanpää, Mikko J.;
Mäntynen, Vesa;
Saarakkala, Simo

Publication type:

Article

Dissecting the genetic architecture of quantitative traits using genome‐wide identity‐by‐descent sharing.

Published in:

Molecular Ecology, 2024, v. 33, n. 6, p. 1, doi. 10.1111/mec.17299

By:

Fraimout, Antoine;
Guillaume, Frédéric;
Li, Zitong;
Sillanpää, Mikko J.;
Rastas, Pasi;
Merilä, Juha

Publication type:

Article

Dispersal in a house sparrow metapopulation: An integrative case study of genetic assignment calibrated with ecological data and pedigree information.

Published in:

Molecular Ecology, 2021, v. 30, n. 19, p. 4740, doi. 10.1111/mec.16083

By:

Saatoglu, Dilan;
Niskanen, Alina K.;
Kuismin, Markku;
Ranke, Peter S.;
Hagen, Ingerid J.;
Araya‐Ajoy, Yimen G.;
Kvalnes, Thomas;
Pärn, Henrik;
Rønning, Bernt;
Ringsby, Thor Harald;
Sæther, Bernt‐Erik;
Husby, Arild;
Sillanpää, Mikko J.;
Jensen, Henrik

Publication type:

Article

Principal component analysis revisited: fast multitrait genetic evaluations with smooth convergence.

Published in:

G3: Genes | Genomes | Genetics, 2024, v. 14, n. 12, p. 1, doi. 10.1093/g3journal/jkae228

By:

Ahlinder, Jon;
Hall, David;
Suontama, Mari;
Sillanpää, Mikko J

Publication type:

Article

Sub-sampling graph neural networks for genomic prediction of quantitative phenotypes.

Published in:

G3: Genes | Genomes | Genetics, 2024, v. 14, n. 11, p. 1, doi. 10.1093/g3journal/jkae216

By:

Kihlman, Ragini;
Launonen, Ilkka;
Sillanpää, Mikko J;
Waldmann, Patrik

Publication type:

Article

Gap-com: general model selection criterion for sparse undirected gene networks with nontrivial community structure.

Published in:

G3: Genes | Genomes | Genetics, 2022, v. 12, n. 2, p. 1, doi. 10.1093/g3journal/jkab437

By:

Kuismin, Markku;
Dodangeh, Fatemeh;
Sillanpää, Mikko J.

Publication type:

Article

Importance of correcting genomic relationships in single-locus QTL mapping model with an advanced backcross population.

Published in:

G3: Genes | Genomes | Genetics, 2021, v. 11, n. 6, p. 1, doi. 10.1093/g3journal/jkab105

By:

Mathew, Boby;
Léon, Jens;
Dadshani, Said;
Pillen, Klaus;
Sillanpää, Mikko J.;
Naz, Ali Ahmad

Publication type:

Article

CONE: Community Oriented Network Estimation Is a Versatile Framework for Inferring Population Structure in Large-Scale Sequencing Data.

Published in:

G3: Genes | Genomes | Genetics, 2017, v. 7, n. 10, p. 3359, doi. 10.1534/g3.117.300131

By:

Kuismin, Markku O.;
Ahlinder, Jon;
Sillanpää, Mikko J.

Publication type:

Article

Use of Wishart Prior and Simple Extensions for Sparse Precision Matrix Estimation.

Published in:

PLoS ONE, 2016, v. 11, n. 2, p. 1, doi. 10.1371/journal.pone.0148171

By:

Kuismin, Markku;
Sillanpää, Mikko J.

Publication type:

Article

NeuralLasso: Neural Networks Meet Lasso in Genomic Prediction.

Published in:

Frontiers in Plant Science, 2022, v. 13, p. 1, doi. 10.3389/fpls.2022.800161

By:

Mathew, Boby;
Hauptmann, Andreas;
Léon, Jens;
Sillanpää, Mikko J.

Publication type:

Article

Gradient Boosted Regression Trees for Modelling Onset of Austenite Decomposition During Cooling of Steels.

Published in:

Metallurgical & Materials Transactions. Part B, 2023, v. 54, n. 4, p. 1705, doi. 10.1007/s11663-023-02782-9

By:

Luukkonen, Juho;
Pohjonen, Aarne;
Louhenkilpi, Seppo;
Miettinen, Jyrki;
Sillanpää, Mikko J.;
Laitinen, Erkki

Publication type:

Article

Estimation of dynamic SNP-heritability with Bayesian Gaussian process models.

Published in:

Bioinformatics, 2020, v. 36, n. 12, p. 3795, doi. 10.1093/bioinformatics/btaa199

By:

Arjas, Arttu;
Hauptmann, Andreas;
Sillanpää, Mikko J

Publication type:

Article

A Gaussian process model and Bayesian variable selection for mapping function-valued quantitative traits with incomplete phenotypic data.

Published in:

Bioinformatics, 2019, v. 35, n. 19, p. 3684, doi. 10.1093/bioinformatics/btz164

By:

Vanhatalo, Jarno;
Li, Zitong;
Sillanpää, Mikko J

Publication type:

Article

Robust multi-outcome regression with correlated covariate blocks using fused LAD-lasso.

Published in:

Journal of Applied Statistics, 2025, v. 52, n. 5, p. 1081, doi. 10.1080/02664763.2024.2414346

By:

Möttönen, Jyrki;
Lähderanta, Tero;
Salonen, Janne;
Sillanpää, Mikko J.

Publication type:

Article

Genetic assignment of individuals to source populations using network estimation tools.

Published in:

Methods in Ecology & Evolution, 2020, v. 11, n. 2, p. 333, doi. 10.1111/2041-210X.13323

By:

Kuismin, Markku;
Saatoglu, Dilan;
Niskanen, Alina K.;
Jensen, Henrik;
Sillanpää, Mikko J.;
Gaggiotti, Oscar

Publication type:

Article

Rapid Bayesian inference of heritability in animal models without convergence problems.

Published in:

Methods in Ecology & Evolution, 2013, v. 4, n. 11, p. 1037, doi. 10.1111/2041-210X.12113

By:

Ahlinder, Jon;
Sillanpää, Mikko J.;
Hadfield, Jarod

Publication type:

Article

Hierarchical deconvolution for incoherent scatter radar data.

Published in:

Atmospheric Measurement Techniques, 2022, v. 15, n. 12, p. 3843, doi. 10.5194/amt-15-3843-2022

By:

Ross, Snizhana;
Arjas, Arttu;
Virtanen, Ilkka I.;
Sillanpää, Mikko J.;
Roininen, Lassi;
Hauptmann, Andreas

Publication type:

Article

Model guided trait-specific co-expression network estimation as a new perspective for identifying molecular interactions and pathways.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 5, p. 1, doi. 10.1371/journal.pcbi.1008960

By:

Kontio, Juho A. J.;
Pyhäjärvi, Tanja;
Sillanpää, Mikko J.

Publication type:

Article

Mobile road weather sensor calibration by sensor fusion and linear mixed models.

Published in:

PLoS ONE, 2019, v. 14, n. 2, p. 1, doi. 10.1371/journal.pone.0211702

By:

Lovén, Lauri;
Karsisto, Virve;
Järvinen, Heikki;
Sillanpää, Mikko J.;
Leppänen, Teemu;
Peltonen, Ella;
Pirttikangas, Susanna;
Riekki, Jukka

Publication type:

Article

Impact of residual covariance structures on genomic prediction ability in multi-environment trials.

Published in:

PLoS ONE, 2018, v. 13, n. 7, p. 1, doi. 10.1371/journal.pone.0201181

By:

Mathew, Boby;
Léon, Jens;
Sillanpää, Mikko J.

Publication type:

Article

Estimating genealogies from linked marker data: a Bayesian approach.

Published in:

BMC Bioinformatics, 2007, v. 8, p. 411, doi. 10.1186/1471-2105-8-411

By:

Gasbarra, Dario;
Pirinen, Matti;
Sillanpää, Mikko J.;
Arjas, Elja

Publication type:

Article

On statistical methods for estimating heritability in wild populations.

Published in:

Molecular Ecology, 2011, v. 20, n. 7, p. 1324, doi. 10.1111/j.1365-294X.2011.05021.x

By:

SillanpÄÄ, Mikko J.

Publication type:

Article

Effect of centralization on geographic accessibility of maternity hospitals in Finland.

Published in:

2020

By:

Huotari, Tiina;
Rusanen, Jarmo;
Keistinen, Timo;
Lähderanta, Tero;
Ruha, Leena;
Sillanpää, Mikko J.;
Antikainen, Harri

Publication type:

journal article

Stochastic search variable selection based on two mixture components and continuous‐scale weighting.

Published in:

Biometrical Journal, 2019, v. 61, n. 3, p. 729, doi. 10.1002/bimj.201800118

By:

Rinta‐aho, Marko J.;
Sillanpää, Mikko J.

Publication type:

Article

Prioritizing covariates in the planning of future studies in the meta-analytic framework.

Published in:

Biometrical Journal, 2017, v. 59, n. 1, p. 110, doi. 10.1002/bimj.201600067

By:

Karvanen, Juha;
Sillanpää, Mikko J.

Publication type:

Article

Bayesian Analysis of Genetic Differentiation Between Populations.

Published in:

Genetics, 2003, v. 163, n. 1, p. 367, doi. 10.1093/genetics/163.1.367

By:

Corander, Jukka;
Waldmann, Patrik;
Sillanpää, Mikko J.

Publication type:

Article