Works matching AU Sill, Martin

Results: 96

Robust molecular subgrouping and reference-free aneuploidy detection in medulloblastoma using low-depth whole genome bisulfite sequencing.

Published in:

Acta Neuropathologica Communications, 2025, v. 13, n. 1, p. 1, doi. 10.1186/s40478-025-02049-1

By:

Thompson, Dean;
Castle, Jemma;
Sill, Martin;
Pfister, Stefan M.;
Bailey, Simon;
Hicks, Debbie;
Clifford, Steven C.;
Schwalbe, Edward C.

Publication type:

Article

Applying stability selection to consistently estimate sparse principal components in high-dimensional molecular data.

Published in:

Bioinformatics, 2015, v. 31, n. 16, p. 2683, doi. 10.1093/bioinformatics/btv197

By:

Sill, Martin;
Saadati, Maral;
Benner, Axel

Publication type:

Article

Robust biclustering by sparse singular value decomposition incorporating stability selection.

Published in:

Bioinformatics, 2011, v. 27, n. 15, p. 2089, doi. 10.1093/bioinformatics/btr322

By:

Sill, Martin;
Kaiser, Sebastian;
Benner, Axel;
Kopp-Schneider, Annette

Publication type:

Article

Protein Profiling Gastric Cancer and Neighboring Control Tissues Using High-Content Antibody Microarrays.

Published in:

Microarrays (2076-3905), 2016, v. 5, n. 3, p. 19, doi. 10.3390/microarrays5030019

By:

Sill, Martin;
Schröder, Christoph;
Ying Shen;
Marzoq, Aseel;
Komel, Radovan;
Hoheisel, Jörg D.;
Nienhüser, Henrik;
Schmidt, Thomas;
Kastelic, Damjana

Publication type:

Article

Modulation of B Cells and Homing Marker on NK Cells Through Extracorporeal Photopheresis in Patients With Steroid-Refractory/Resistant Graft-Vs.-Host Disease Without Hampering Anti-viral/Anti-leukemic Effects.

Published in:

Frontiers in Immunology, 2018, p. N.PAG, doi. 10.3389/fimmu.2018.02207

By:

Wang, Lei;
Ni, Ming;
Hückelhoven-Krauss, Angela;
Sellner, Leopold;
Hoffmann, Jean-Marc;
Neuber, Brigitte;
Luft, Thomas;
Hegenbart, Ute;
Schönland, Stefan;
Kleist, Christian;
Sill, Martin;
Chen, Bao-an;
Wuchter, Patrick;
Eckstein, Volker;
Krüger, William;
Hilgendorf, Inken;
Yerushalmi, Ronit;
Nagler, Arnon;
Müller-Tidow, Carsten;
Ho, Anthony D.

Publication type:

Article

High impact of miRNA-4521 on FOXM1 expression in medulloblastoma.

Published in:

Cell Death & Disease, 2019, v. 10, n. 10, p. N.PAG, doi. 10.1038/s41419-019-1926-1

By:

Senfter, Daniel;
Samadaei, Mahzeiar;
Mader, Robert M.;
Gojo, Johannes;
Peyrl, Andreas;
Krupitza, Georg;
Kool, Marcel;
Sill, Martin;
Haberler, Christine;
Ricken, Gerda;
Czech, Thomas;
Slavc, Irene;
Madlener, Sibylle

Publication type:

Article

SEURAT: Visual analytics for the integrated analysis of microarray data.

Published in:

2010

By:

Gribov, Alexander;
Sill, Martin;
Lück, Sonja;
Rücker, Frank;
Döhner, Konstanze;
Bullinger, Lars;
Benner, Axel;
Unwin, Antony

Publication type:

Product Review

Clinical implementation of integrated molecular‐morphologic risk prediction for meningioma.

Published in:

Brain Pathology, 2023, v. 33, n. 3, p. 1, doi. 10.1111/bpa.13132

By:

Hielscher, Thomas;
Sill, Martin;
Sievers, Philipp;
Stichel, Damian;
Brandner, Sebastian;
Jones, David T. W.;
von Deimling, Andreas;
Sahm, Felix;
Maas, Sybren L. N.

Publication type:

Article

Papillary Tumor of the Pineal Region: A Distinct Molecular Entity.

Published in:

Brain Pathology, 2016, v. 26, n. 2, p. 199, doi. 10.1111/bpa.12282

By:

Heim, Stephanie;
Sill, Martin;
Jones, David T.W.;
Vasiljevic, Alexandre;
Jouvet, Anne;
Fèvre‐Montange, Michelle;
Wesseling, Pieter;
Beschorner, Rudi;
Mittelbronn, Michel;
Kohlhof, Patricia;
Hovestadt, Volker;
Johann, Pascal;
Kool, Marcel;
Pajtler, Kristian W.;
Korshunov, Andrey;
Ruland, Vincent;
Sperveslage, Jan;
Thomas, Christian;
Witt, Hendrik;
Deimling, Andreas

Publication type:

Article

Prognostic value of tumor progression-related gene expression in colorectal cancer patients.

Published in:

Journal of Cancer Research & Clinical Oncology, 2012, v. 138, n. 10, p. 1631, doi. 10.1007/s00432-012-1238-7

By:

Uhlmann, Miriam;
Georgieva, Milka;
Sill, Martin;
Linnemann, Ulrich;
Berger, Martin

Publication type:

Article

Integrated DNA methylation and copy-number profiling identify three clinically and biologically relevant groups of anaplastic glioma.

Published in:

Acta Neuropathologica, 2014, v. 128, n. 4, p. 561, doi. 10.1007/s00401-014-1315-x

By:

Wiestler, Benedikt;
Capper, David;
Sill, Martin;
Jones, David;
Hovestadt, Volker;
Sturm, Dominik;
Koelsche, Christian;
Bertoni, Anna;
Schweizer, Leonille;
Korshunov, Andrey;
Weiß, Elisa;
Schliesser, Maximilian;
Radbruch, Alexander;
Herold-Mende, Christel;
Roth, Patrick;
Unterberg, Andreas;
Hartmann, Christian;
Pietsch, Torsten;
Reifenberger, Guido;
Lichter, Peter

Publication type:

Article

Clinical outcome following surgical resection and radiotherapy in adult patients with pleomorphic xanthoastrocytoma as defined by DNA methylation profiling.

Published in:

Neuro-Oncology Practice, 2023, v. 10, n. 3, p. 307, doi. 10.1093/nop/npad004

By:

Deng, Maximilian;
Hinz, Felix;
Harrabi, Semi;
Sturm, Dominik;
Sill, Martin;
Korshunov, Andrey;
Eichkorn, Tanja;
Hörner-Rieber, Juliane;
Herfarth, Klaus;
Jungk, Christine;
Unterberg, Andreas;
Pfister, Stefan;
Wick, Wolfgang;
von Deimling, Andreas;
Jones, David;
Debus, Jürgen;
Sahm, Felix;
König, Laila

Publication type:

Article

Integrated genomic analysis reveals actionable targets in pediatric spinal cord low-grade gliomas.

Published in:

Acta Neuropathologica Communications, 2022, v. 10, n. 1, p. 1, doi. 10.1186/s40478-022-01446-0

By:

Adela, Misove;
Ales, Vicha;
Petr, Broz;
Katerina, Vanova;
David, Sumerauer;
Lucie, Stolova;
Lucie, Sramkova;
Miroslav, Koblizek;
Josef, Zamecnik;
Martin, Kyncl;
Zuzana, Holubova;
Petr, Liby;
Jakub, Taborsky;
Vladimir III, Benes;
Ivana, Pernikova;
David, Jones T. W.;
Martin, Sill;
Terezia, Stancokova;
Lenka, Krskova;
Michal, Zapotocky

Publication type:

Article

Genetic and epigenetic landscape of IDH-wildtype glioblastomas with FGFR3-TACC3 fusions.

Published in:

Acta Neuropathologica Communications, 2020, v. 8, n. 1, p. N.PAG, doi. 10.1186/s40478-020-01058-6

By:

Mata, Douglas A.;
Benhamida, Jamal K.;
Lin, Andrew L.;
Vanderbilt, Chad M.;
Yang, Soo-Ryum;
Villafania, Liliana B.;
Ferguson, Donna C.;
Jonsson, Philip;
Miller, Alexandra M.;
Tabar, Viviane;
Brennan, Cameron W.;
Moss, Nelson S.;
Sill, Martin;
Benayed, Ryma;
Mellinghoff, Ingo K.;
Rosenblum, Marc K.;
Arcila, Maria E.;
Ladanyi, Marc;
Bale, Tejus A.

Publication type:

Article

Anaplastic ganglioglioma—A diagnosis comprising several distinct tumour types.

Published in:

Neuropathology & Applied Neurobiology, 2022, v. 48, n. 7, p. 1, doi. 10.1111/nan.12847

By:

Reinhardt, Annekathrin;
Pfister, Kristin;
Schrimpf, Daniel;
Stichel, Damian;
Sahm, Felix;
Reuss, David E.;
Capper, David;
Wefers, Annika K.;
Ebrahimi, Azadeh;
Sill, Martin;
Felsberg, Joerg;
Reifenberger, Guido;
Becker, Albert;
Prinz, Marco;
Staszewski, Ori;
Hartmann, Christian;
Schittenhelm, Jens;
Gramatzki, Dorothee;
Weller, Michael;
Olar, Adriana

Publication type:

Article

Accurate calling of KIAA1549‐BRAF fusions from DNA of human brain tumours using methylation array‐based copy number and gene panel sequencing data.

Published in:

Neuropathology & Applied Neurobiology, 2021, v. 47, n. 3, p. 406, doi. 10.1111/nan.12683

By:

Stichel, Damian;
Schrimpf, Daniel;
Sievers, Philipp;
Reinhardt, Annekathrin;
Suwala, Abigail K.;
Sill, Martin;
Reuss, David E.;
Korshunov, Andrey;
Casalini, Belén M.;
Sommerkamp, Alexander C.;
Ecker, Jonas;
Selt, Florian;
Sturm, Dominik;
Gnekow, Astrid;
Koch, Arend;
Simon, Michèle;
Hernáiz Driever, Pablo;
Schüller, Ulrich;
Capper, David;
Tilburg, Cornelis M.

Publication type:

Article

Radiation-induced gliomas represent H3-/IDH-wild type pediatric gliomas with recurrent PDGFRA amplification and loss of CDKN2A/B.

Published in:

Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-25708-y

By:

Deng, Maximilian Y.;
Sturm, Dominik;
Pfaff, Elke;
Sill, Martin;
Stichel, Damian;
Balasubramanian, Gnana Prakash;
Tippelt, Stephan;
Kramm, Christof;
Donson, Andrew M.;
Green, Adam L.;
Jones, Chris;
Schittenhelm, Jens;
Ebinger, Martin;
Schuhmann, Martin U.;
Jones, Barbara C.;
van Tilburg, Cornelis M.;
Wittmann, Andrea;
Golanov, Andrey;
Ryzhova, Marina;
Ecker, Jonas

Publication type:

Article

Clinical and molecular study of radiation-induced gliomas.

Published in:

Scientific Reports, 2024, v. 14, n. 1, p. 1, doi. 10.1038/s41598-024-53434-0

By:

Trkova, Katerina;
Sumerauer, David;
Bubenikova, Adela;
Krskova, Lenka;
Vicha, Ales;
Koblizek, Miroslav;
Zamecnik, Josef;
Jurasek, Bruno;
Kyncl, Martin;
Malinova, Bela;
Ondrova, Barbora;
Jones, David T. W.;
Sill, Martin;
Strnadova, Martina;
Stolova, Lucie;
Misove, Adela;
Benes III, Vladimir;
Zapotocky, Michal

Publication type:

Article

Molecular tumor classification using DNA methylome analysis.

Published in:

Human Molecular Genetics, 2020, v. 29, n. R2, p. R205, doi. 10.1093/hmg/ddaa147

By:

Sill, Martin;
Plass, Christoph;
Pfister, Stefan M;
Lipka, Daniel B

Publication type:

Article

Adamantinomatous and papillary craniopharyngiomas are characterized by distinct epigenomic as well as mutational and transcriptomic profiles.

Published in:

Acta Neuropathologica Communications, 2016, v. 4, p. 1, doi. 10.1186/s40478-016-0287-6

By:

Hölsken, Annett;
Sill, Martin;
Merkle, Jessica;
Schweizer, Leonille;
Buchfelder, Michael;
Flitsch, Jörg;
Fahlbusch, Rudolf;
Metzler, Markus;
Kool, Marcel;
Pfister, Stefan M.;
von Deimling, Andreas;
Capper, David;
Jones, David T. W.;
Buslei, Rolf

Publication type:

Article

Global DNA methylation reflects spatial heterogeneity and molecular evolution of lung adenocarcinomas.

Published in:

International Journal of Cancer, 2019, v. 144, n. 5, p. 1061, doi. 10.1002/ijc.31939

By:

Dietz, Steffen;
Lifshitz, Aviezer;
Kazdal, Daniel;
Harms, Alexander;
Endris, Volker;
Winter, Hauke;
Stenzinger, Albrecht;
Warth, Arne;
Sill, Martin;
Tanay, Amos;
Sültmann, Holger

Publication type:

Article

Poly-k-Trend Tests for Survival Adjusted Analysis of Tumor Rates Formulated as Approximate Multiple Contrast Test.

Published in:

Journal of Biopharmaceutical Statistics, 2008, v. 18, n. 5, p. 934, doi. 10.1080/10543400802294285

By:

Schaarschmidt, Frank;
Sill, Martin;
Hothorn, LudwigA.

Publication type:

Article

Sarcoma classification by DNA methylation profiling.

Published in:

Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-020-20603-4

By:

Koelsche, Christian;
Schrimpf, Daniel;
Stichel, Damian;
Sill, Martin;
Sahm, Felix;
Reuss, David E.;
Blattner, Mirjam;
Worst, Barbara;
Heilig, Christoph E.;
Beck, Katja;
Horak, Peter;
Kreutzfeldt, Simon;
Paff, Elke;
Stark, Sebastian;
Johann, Pascal;
Selt, Florian;
Ecker, Jonas;
Sturm, Dominik;
Pajtler, Kristian W.;
Reinhardt, Annekathrin

Publication type:

Article

Plasma protein analysis of patients with different B-cell lymphomas using high-content antibody microarrays.

Published in:

Proteomics - Clinical Applications, 2013, v. 7, n. 11/12, p. 802, doi. 10.1002/prca.201300048

By:

Schröder, Christoph;
Srinivasan, Harish;
Sill, Martin;
Linseisen, Jakob;
Fellenberg, Kurt;
Becker, Nikolaus;
Nieters, Alexandra;
Hoheisel, Jörg D.

Publication type:

Article

The Site of Origin of Medulloblastoma: Surgical Observations Correlated to Molecular Groups.

Published in:

Cancers, 2023, v. 15, n. 19, p. 4877, doi. 10.3390/cancers15194877

By:

Ciobanu-Caraus, Olga;
Czech, Thomas;
Peyrl, Andreas;
Haberler, Christine;
Kasprian, Gregor;
Furtner, Julia;
Kool, Marcel;
Sill, Martin;
Frischer, Josa M.;
Cho, Anna;
Slavc, Irene;
Rössler, Karl;
Gojo, Johannes;
Dorfer, Christian

Publication type:

Article

Molecular characterization of AML with ins(21;8)(q22;q22q22) reveals similarity to t(8;21) AML.

Published in:

Genes, Chromosomes & Cancer, 2011, v. 50, n. 1, p. 51, doi. 10.1002/gcc.20830

By:

Rücker, Frank G.;
Bullinger, Lars;
Gribov, Alexander;
Sill, Martin;
Schlenk, Richard F.;
Lichter, Peter;
Döhner, Hartmut;
Döhner, Konstanze

Publication type:

Article

A synergistic interaction between HDAC‐ and PARP inhibitors in childhood tumors with chromothripsis.

Published in:

International Journal of Cancer, 2022, v. 151, n. 4, p. 590, doi. 10.1002/ijc.34027

By:

Khalid, Umar;
Simovic, Milena;
Hammann, Linda A.;
Iskar, Murat;
Wong, John K. L.;
Kumar, Rithu;
Jugold, Manfred;
Sill, Martin;
Bolkestein, Michiel;
Kolb, Thorsten;
Hergt, Michaela;
Devens, Frauke;
Ecker, Jonas;
Kool, Marcel;
Milde, Till;
Westermann, Frank;
Benner, Axel;
Lewis, Joe;
Dietrich, Sascha;
Pfister, Stefan M.

Publication type:

Article

Author Correction: Multi-omic and single-cell profiling of chromothriptic medulloblastoma reveals genomic and transcriptomic consequences of genome instability.

Published in:

2025

By:

Smirnov, Petr;
Przybilla, Moritz J.;
Simovic-Lorenz, Milena;
Parra, R. Gonzalo;
Susak, Hana;
Ratnaparkhe, Manasi;
Wong, John KL.;
Körber, Verena;
Mallm, Jan-Philipp;
Philippos, George;
Sill, Martin;
Kolb, Thorsten;
Kumar, Rithu;
Casiraghi, Nicola;
Okonechnikov, Konstantin;
Ghasemi, David R.;
Maaß, Kendra Korinna;
Pajtler, Kristian W.;
Jauch, Anna;
Korshunov, Andrey

Publication type:

Correction Notice

Genomic and phenotypic stability of fusion-driven pediatric sarcoma cell lines.

Published in:

Nature Communications, 2025, v. 16, n. 1, p. 1, doi. 10.1038/s41467-024-55340-5

By:

Kasan, Merve;
Geyer, Florian H.;
Siebenlist, Jana;
Sill, Martin;
Öllinger, Rupert;
Faehling, Tobias;
de Álava, Enrique;
Surdez, Didier;
Dirksen, Uta;
Oehme, Ina;
Scotlandi, Katia;
Delattre, Olivier;
Müller-Nurasyid, Martina;
Rad, Roland;
Strauch, Konstantin;
Grünewald, Thomas G. P.;
Cidre-Aranaz, Florencia

Publication type:

Article

Multi-omic and single-cell profiling of chromothriptic medulloblastoma reveals genomic and transcriptomic consequences of genome instability.

Published in:

Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-54547-w

By:

Smirnov, Petr;
Przybilla, Moritz J.;
Simovic-Lorenz, Milena;
Parra, R. Gonzalo;
Susak, Hana;
Ratnaparkhe, Manasi;
Wong, John KL.;
Körber, Verena;
Mallm, Jan-Philipp;
Philippos, George;
Sill, Martin;
Kolb, Thorsten;
Kumar, Rithu;
Casiraghi, Nicola;
Okonechnikov, Konstantin;
Ghasemi, David R.;
Maaß, Kendra Korinna;
Pajtler, Kristian W.;
Jauch, Anna;
Korshunov, Andrey

Publication type:

Article

Targeted resequencing for analysis of clonal composition of recurrent gene mutations in chronic lymphocytic leukaemia.

Published in:

British Journal of Haematology, 2013, v. 163, n. 4, p. 496, doi. 10.1111/bjh.12539

By:

Jethwa, Alexander;
Hüllein, Jennifer;
Stolz, Tatjana;
Blume, Carolin;
Sellner, Leopold;
Jauch, Anna;
Sill, Martin;
Kater, Arnon P.;
te Raa, G. Doreen;
Geisler, Christian;
Oers, Marinus;
Dietrich, Sascha;
Dreger, Peter;
Ho, Anthony D.;
Paruzynski, Anna;
Schmidt, Manfred;
Kalle, Christof;
Glimm, Hanno;
Zenz, Thorsten

Publication type:

Article

Prediction of recurrence of non muscle-invasive bladder cancer by means of a protein signature identified by antibody microarray analyses.

Published in:

Proteomics, 2014, v. 14, n. 11, p. 1333, doi. 10.1002/pmic.201300320

By:

Srinivasan, Harish;
Allory, Yves;
Sill, Martin;
Vordos, Dimitri;
Alhamdani, Mohamed Saiel Saeed;
Radvanyi, Francois;
Hoheisel, Jörg D.;
Schröder, Christoph

Publication type:

Article

Pediatric-type high-grade neuroepithelial tumors with CIC gene fusion share a common DNA methylation signature.

Published in:

NPJ Precision Oncology, 2023, v. 7, n. 1, p. 1, doi. 10.1038/s41698-023-00372-1

By:

Sievers, Philipp;
Sill, Martin;
Schrimpf, Daniel;
Abdullaev, Zied;
Donson, Andrew M.;
Lake, Jessica A.;
Friedel, Dennis;
Scheie, David;
Tynninen, Olli;
Rauramaa, Tuomas;
Vepsäläinen, Kaisa L.;
Samuel, David;
Chapman, Rebecca;
Grundy, Richard G.;
Pajtler, Kristian W.;
Tauziède-Espariat, Arnault;
Métais, Alice;
Varlet, Pascale;
Snuderl, Matija;
Jacques, Thomas S.

Publication type:

Article

Drug sensitivity profiling of 3D tumor tissue cultures in the pediatric precision oncology program INFORM.

Published in:

NPJ Precision Oncology, 2022, v. 6, n. 1, p. 1, doi. 10.1038/s41698-022-00335-y

By:

Peterziel, Heike;
Jamaladdin, Nora;
ElHarouni, Dina;
Gerloff, Xenia F.;
Herter, Sonja;
Fiesel, Petra;
Berker, Yannick;
Blattner-Johnson, Mirjam;
Schramm, Kathrin;
Jones, Barbara C.;
Reuss, David;
Turunen, Laura;
Friedenauer, Aileen;
Holland-Letz, Tim;
Sill, Martin;
Weiser, Lena;
Previti, Christopher;
Balasubramanian, Gnanaprakash;
Gerber, Nicolas U.;
Gojo, Johannes

Publication type:

Article

Transcriptional immunogenomic analysis reveals distinct immunological clusters in paediatric nervous system tumours.

Published in:

Genome Medicine, 2023, v. 15, n. 1, p. 1, doi. 10.1186/s13073-023-01219-x

By:

Nabbi, Arash;
Beck, Pengbo;
Delaidelli, Alberto;
Oldridge, Derek A.;
Sudhaman, Sumedha;
Zhu, Kelsey;
Yang, S. Y. Cindy;
Mulder, David T.;
Bruce, Jeffrey P.;
Paulson, Joseph N.;
Raman, Pichai;
Zhu, Yuankun;
Resnick, Adam C.;
Sorensen, Poul H.;
Sill, Martin;
Brabetz, Sebastian;
Lambo, Sander;
Malkin, David;
Johann, Pascal D.;
Kool, Marcel

Publication type:

Article

Drivers underpinning the malignant transformation of giant cell tumour of bone.

Published in:

Journal of Pathology, 2020, v. 252, n. 4, p. 433, doi. 10.1002/path.5537

By:

Fittall, Matthew W;
Lyskjær, Iben;
Ellery, Peter;
Lombard, Patrick;
Ijaz, Jannat;
Strobl, Anna‐Christina;
Oukrif, Dahmane;
Tarabichi, Maxime;
Sill, Martin;
Koelsche, Christian;
Mechtersheimer, Gunhild;
Demeulemeester, Jonas;
Tirabosco, Roberto;
Amary, Fernanda;
Campbell, Peter J;
Pfister, Stefan M;
Jones, David TW;
Pillay, Nischalan;
Van Loo, Peter;
Behjati, Sam

Publication type:

Article

DNA methylation‐based profiling of bone and soft tissue tumours: a validation study of the 'DKFZ Sarcoma Classifier'.

Published in:

Journal of Pathology: Clinical Research, 2021, v. 7, n. 4, p. 350, doi. 10.1002/cjp2.215

By:

Lyskjær, Iben;
De Noon, Solange;
Tirabosco, Roberto;
Rocha, Ana Maia;
Lindsay, Daniel;
Amary, Fernanda;
Ye, Hongtao;
Schrimpf, Daniel;
Stichel, Damian;
Sill, Martin;
Koelsche, Christian;
Pillay, Nischalan;
Von Deimling, Andreas;
Beck, Stephan;
Flanagan, Adrienne M

Publication type:

Article

Assessment and optimisation of normalisation methods for dual-colour antibody microarrays.

Published in:

BMC Bioinformatics, 2010, v. 11, p. 556, doi. 10.1186/1471-2105-11-556

By:

Sill, Martin;
Schröder, Christoph;
Hoheisel, Jörg D.;
Benner, Axel;
Zucknick, Manuela

Publication type:

Article

Reproducible Research with R and RStudio.

Published in:

Biometrical Journal, 2014, v. 56, n. 4, p. 721, doi. 10.1002/bimj.201400066

By:

Sill, Martin

Publication type:

Article

Approximate Simultaneous Confidence Intervals for Multiple Contrasts of Binomial Proportions.

Published in:

Biometrical Journal, 2008, v. 50, n. 5, p. 782, doi. 10.1002/bimj.200710465

By:

Schaarschmidt, Frank;
Sill, Martin;
Hothorn, Ludwig A.

Publication type:

Article

Conumee 2.0: enhanced copy-number variation analysis from DNA methylation arrays for humans and mice.

Published in:

Bioinformatics, 2024, v. 40, n. 2, p. 1, doi. 10.1093/bioinformatics/btae029

By:

Daenekas, Bjarne;
Pérez, Eilís;
Boniolo, Fabio;
Stefan, Sabina;
Benfatto, Salvatore;
Sill, Martin;
Sturm, Dominik;
Jones, David T W;
Capper, David;
Zapatka, Marc;
Hovestadt, Volker

Publication type:

Article

Correction to: Integrated genomic analysis reveals actionable targets in pediatric spinal cord low-grade gliomas.

Published in:

2022

By:

Misove, Adela;
Vicha, Ales;
Broz, Petr;
Vanova, Katerina;
Sumerauer, David;
Stolova, Lucie;
Sramkova, Lucie;
Koblizek, Miroslav;
Zamecnik, Josef;
Kyncl, Martin;
Holubova, Zuzana;
Liby, Petr;
Taborsky, Jakub;
Benes III, Vladimir;
Pernikova, Ivana;
Jones, David T. W.;
Sill, Martin;
Stancokova, Terezia;
Krskova, Lenka;
Zapotocky, Michal

Publication type:

Correction Notice

Machine learning workflows to estimate class probabilities for precision cancer diagnostics on DNA methylation microarray data.

Published in:

Nature Protocols, 2020, v. 15, n. 2, p. 479, doi. 10.1038/s41596-019-0251-6

By:

Maros, Máté E.;
Capper, David;
Jones, David T. W.;
Hovestadt, Volker;
von Deimling, Andreas;
Pfister, Stefan M.;
Benner, Axel;
Zucknick, Manuela;
Sill, Martin

Publication type:

Article

RF_Purify: a novel tool for comprehensive analysis of tumor-purity in methylation array data based on random forest regression.

Published in:

BMC Bioinformatics, 2019, v. 20, n. 1, p. N.PAG, doi. 10.1186/s12859-019-3014-z

By:

Johann, Pascal David;
Jäger, Natalie;
Pfister, Stefan M.;
Sill, Martin

Publication type:

Article

Genetical and epigenetical profiling identifies two subgroups of pineal parenchymal tumors of intermediate differentiation (PPTID) with distinct molecular, histological and clinical characteristics.

Published in:

Acta Neuropathologica, 2023, v. 146, n. 6, p. 853, doi. 10.1007/s00401-023-02638-1

By:

Rahmanzade, Ramin;
Pfaff, Elke;
Banan, Rouzbeh;
Sievers, Philipp;
Suwala, Abigail K.;
Hinz, Felix;
Bogumil, Henri;
Cherkezov, Asan;
Kaan, Aras Fuat;
Schrimpf, Daniel;
Friedel, Dennis;
Göbel, Kirsten;
Keller, Felix;
Saenz-Sardà, Xavier;
Lossos, Alexander;
Sill, Martin;
Witt, Olaf;
Sakowitz, Oliver W.;
Korshunov, Andrey;
Reuss, David E.

Publication type:

Article

Molecular characterisation defines clinically-actionable heterogeneity within Group 4 medulloblastoma and improves disease risk-stratification.

Published in:

Acta Neuropathologica, 2023, v. 145, n. 5, p. 651, doi. 10.1007/s00401-023-02566-0

By:

Goddard, Jack;
Castle, Jemma;
Southworth, Emily;
Fletcher, Anya;
Crosier, Stephen;
Martin-Guerrero, Idoia;
García-Ariza, Miguel;
Navajas, Aurora;
Masliah-Planchon, Julien;
Bourdeaut, Franck;
Dufour, Christelle;
Ayrault, Olivier;
Goschzik, Tobias;
Pietsch, Torsten;
Sill, Martin;
Pfister, Stefan M.;
Rutkowski, Stefan;
Richardson, Stacey;
Hill, Rebecca M.;
Williamson, Daniel

Publication type:

Article

Glioneuronal tumor with ATRX alteration, kinase fusion and anaplastic features (GTAKA): a molecularly distinct brain tumor type with recurrent NTRK gene fusions.

Published in:

Acta Neuropathologica, 2023, v. 145, n. 5, p. 667, doi. 10.1007/s00401-023-02558-0

By:

Bogumil, Henri;
Sill, Martin;
Schrimpf, Daniel;
Ismer, Britta;
Blume, Christina;
Rahmanzade, Ramin;
Hinz, Felix;
Cherkezov, Asan;
Banan, Rouzbeh;
Friedel, Dennis;
Reuss, David E.;
Selt, Florian;
Ecker, Jonas;
Milde, Till;
Pajtler, Kristian W.;
Schittenhelm, Jens;
Hench, Jürgen;
Frank, Stephan;
Boldt, Henning B.;
Kristensen, Bjarne Winther

Publication type:

Article

Correction to: Amplification of the PLAG-family genes—PLAGL1 and PLAGL2—is a key feature of the novel tumor type CNS embryonal tumor with PLAGL amplification.

Published in:

Acta Neuropathologica, 2023, v. 145, n. 4, p. 511, doi. 10.1007/s00401-023-02538-4

By:

Keck, Michaela-Kristina;
Sill, Martin;
Wittmann, Andrea;
Joshi, Piyush;
Stichel, Damian;
Beck, Pengbo;
Okonechnikow, Konstantin;
Sievers, Philipp;
Wefers, Annika K.;
Roncaroli, Federico;
Avula, Shivaram;
McCabe, Martin G.;
Hayden, James T.;
Wesseling, Pieter;
Øra, Ingrid;
Nistér, Monica;
Kranendonk, Mariëtte E. G.;
Tops, Bastiaan B. J.;
Zapotocky, Michal;
Zamecnik, Josef

Publication type:

Article

Identification of low and very high-risk patients with non-WNT/non-SHH medulloblastoma by improved clinico-molecular stratification of the HIT2000 and I-HIT-MED cohorts.

Published in:

Acta Neuropathologica, 2023, v. 145, n. 1, p. 97, doi. 10.1007/s00401-022-02522-4

By:

Mynarek, Martin;
Obrecht, Denise;
Sill, Martin;
Sturm, Dominik;
Kloth-Stachnau, Katja;
Selt, Florian;
Ecker, Jonas;
von Hoff, Katja;
Juhnke, Björn-Ole;
Goschzik, Tobias;
Pietsch, Torsten;
Bockmayr, Michael;
Kool, Marcel;
von Deimling, Andreas;
Witt, Olaf;
Schüller, Ulrich;
Benesch, Martin;
Gerber, Nicolas U.;
Sahm, Felix;
Jones, David T. W.

Publication type:

Article

Amplification of the PLAG-family genes—PLAGL1 and PLAGL2—is a key feature of the novel tumor type CNS embryonal tumor with PLAGL amplification.

Published in:

Acta Neuropathologica, 2023, v. 145, n. 1, p. 49, doi. 10.1007/s00401-022-02516-2

By:

Keck, Michaela-Kristina;
Sill, Martin;
Wittmann, Andrea;
Joshi, Piyush;
Stichel, Damian;
Beck, Pengbo;
Okonechnikow, Konstantin;
Sievers, Philipp;
Wefers, Annika K.;
Roncaroli, Federico;
Avula, Shivaram;
McCabe, Martin G.;
Hayden, James T.;
Wesseling, Pieter;
Øra, Ingrid;
Nistér, Monica;
Kranendonk, Mariëtte E. G.;
Tops, Bastiaan B. J.;
Zapotocky, Michal;
Zamecnik, Josef

Publication type:

Article