Works by Sierro, Nicolas

Results: 26

The clove (Syzygium aromaticum) genome provides insights into the eugenol biosynthesis pathway.

Published in:

Communications Biology, 2022, v. 5, n. 1, p. 1, doi. 10.1038/s42003-022-03618-z

By:

Ouadi, Sonia;
Sierro, Nicolas;
Goepfert, Simon;
Bovet, Lucien;
Glauser, Gaetan;
Vallat, Armelle;
Peitsch, Manuel C.;
Kessler, Felix;
Ivanov, Nikolai V.

Publication type:

Article

Nicotiana noctiflora Hook. Genome Contains Two Cellular T-DNAs with Functional Genes.

Published in:

Plants (2223-7747), 2023, v. 12, n. 22, p. 3787, doi. 10.3390/plants12223787

By:

Khafizova, Galina V.;
Sierro, Nicolas;
Ivanov, Nikolai V.;
Sokornova, Sofie V.;
Polev, Dmitrii E.;
Matveeva, Tatiana V.

Publication type:

Article

Natural and induced variations in transcriptional regulator genes result in low‐nicotine phenotypes in tobacco.

Published in:

Plant Journal, 2022, v. 111, n. 6, p. 1768, doi. 10.1111/tpj.15923

By:

Shoji, Tsubasa;
Moriyama, Koki;
Sierro, Nicolas;
Ouadi, Sonia;
Ivanov, Nikolai V.;
Hashimoto, Takashi;
Saito, Kazuki

Publication type:

Article

Inhibition of Arabidopsis thaliana CIN‐like TCP transcription factors by Agrobacterium T‐DNA‐encoded 6B proteins.

Published in:

Plant Journal, 2020, v. 101, n. 6, p. 1303, doi. 10.1111/tpj.14591

By:

Potuschak, Thomas;
Palatnik, Javier;
Schommer, Carla;
Sierro, Nicolas;
Ivanov, Nikolai V.;
Kwon, Yerim;
Genschik, Pascal;
Davière, Jean‐Michel;
Otten, Léon

Publication type:

Article

Impact of 6-Month Exposure to Aerosols From Potential Modified Risk Tobacco Products Relative to Cigarette Smoke on the Rodent Gastrointestinal Tract.

Published in:

Frontiers in Microbiology, 2021, v. 12, p. 1, doi. 10.3389/fmicb.2021.587745

By:

Battey, James N. D.;
Szostak, Justyna;
Phillips, Blaine;
Teng, Charles;
Tung, Ching Keong;
Lim, Wei Ting;
Yeo, Ying Shan;
Ouadi, Sonia;
Baumer, Karine;
Thomas, Jerome;
Martinis, Jacopo;
Sierro, Nicolas;
Ivanov, Nikolai V.;
Vanscheeuwijck, Patrick;
Peitsch, Manuel C.;
Hoeng, Julia

Publication type:

Article

The clove (Syzygium aromaticum) genome provides insights into the eugenol biosynthesis pathway.

Published in:

Communications Biology, 2025, v. 5, n. 1, p. 1, doi. 10.1038/s42003-022-03618-z

By:

Ouadi, Sonia;
Sierro, Nicolas;
Goepfert, Simon;
Bovet, Lucien;
Glauser, Gaetan;
Vallat, Armelle;
Peitsch, Manuel C.;
Kessler, Felix;
Ivanov, Nikolai V.

Publication type:

Article

Organization of the TC and TE cellular T‐DNA regions in <italic>Nicotiana otophora</italic> and functional analysis of three diverged TE‐<italic>6b</italic> genes.

Published in:

Plant Journal, 2018, v. 94, n. 2, p. 274, doi. 10.1111/tpj.13853

By:

Chen, Ke;
Dorlhac de Borne, François;
Sierro, Nicolas;
Ivanov, Nikolai V.;
Alouia, Malek;
Koechler, Sandrine;
Otten, Léon

Publication type:

Article

Whole genome profiling physical map and ancestral annotation of tobacco Hicks Broadleaf.

Published in:

Plant Journal, 2013, v. 75, n. 5, p. 880, doi. 10.1111/tpj.12247

By:

Sierro, Nicolas;
Oeveren, Jan;
Eijk, Michiel J. T.;
Martin, Florian;
Stormo, Keith E.;
Peitsch, Manuel C.;
Ivanov, Nikolai V.

Publication type:

Article

Metabolic networks of the Nicotiana genus in the spotlight: content, progress and outlook.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 3, p. 1, doi. 10.1093/bib/bbaa136

By:

Foerster, Hartmut;
Battey, James N D;
Sierro, Nicolas;
Ivanov, Nikolai V;
Mueller, Lukas A

Publication type:

Article

SolCyc: a database hub at the Sol Genomics Network (SGN) for the manual curation of metabolic networks in Solanum and Nicotiana specific databases.

Published in:

Database: The Journal of Biological Databases & Curation, 2018, v. 2018, p. 1, doi. 10.1093/database/bay035

By:

Foerster, Hartmut;
Bombarely, Aureliano;
Battey, James N D;
Sierro, Nicolas;
Ivanov, Nikolai V;
Mueller, Lukas A

Publication type:

Article

Nicotine-mediated effects in neuronal and mouse models of synucleinopathy.

Published in:

Frontiers in Neuroscience, 2023, p. 1, doi. 10.3389/fnins.2023.1239009

By:

Fares, Mohamed Bilal;
Alijevic, Omar;
Johne, Stephanie;
Overk, Cassia;
Hashimoto, Makoto;
Kondylis, Athanasios;
Adame, Anthony;
Dulize, Remi;
Peric, Dariusz;
Nury, Catherine;
Battey, James;
Guedj, Emmanuel;
Sierro, Nicolas;
Mc Hugh, Damian;
Rockenstein, Edward;
Kim, Changyoun;
Rissman, Robert A.;
Hoeng, Julia;
Peitsch, Manuel C.;
Masliah, Eliezer

Publication type:

Article

Chromosome-scale assemblies of S. malaccense, S. aqueum, S. jambos, and S. syzygioides provide insights into the evolution of Syzygium genomes.

Published in:

Frontiers in Plant Science, 2023, p. 1, doi. 10.3389/fpls.2023.1248780

By:

Ouadi, Sonia;
Sierro, Nicolas;
Kessler, Felix;
Ivanov, Nikolai V.

Publication type:

Article

Phage T7 DNA mimic protein Ocr is a potent inhibitor of BREX defence.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 13, p. 7601, doi. 10.1093/nar/gkaa510

By:

Isaev, Artem;
Drobiazko, Alena;
Sierro, Nicolas;
Gordeeva, Julia;
Yosef, Ido;
Qimron, Udi;
Ivanov, Nikolai V;
Severinov, Konstantin

Publication type:

Article

Phage T7 DNA mimic protein Ocr is a potent inhibitor of BREX defence.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 10, p. 5397, doi. 10.1093/nar/gkaa290

By:

Isaev, Artem;
Drobiazko, Alena;
Sierro, Nicolas;
Gordeeva, Julia;
Yosef, Ido;
Qimron, Udi;
Ivanov, Nikolai V;
Severinov, Konstantin

Publication type:

Article

BREX system of Escherichia coli distinguishes self from non-self by methylation of a specific DNA site.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 1, p. 253, doi. 10.1093/nar/gky1125

By:

Gordeeva, Julia;
Morozova, Natalya;
Sierro, Nicolas;
Isaev, Artem;
Sinkunas, Tomas;
Tsvetkova, Ksenia;
Matlashov, Mikhail;
Truncaitė, Lidija;
Morgan, Richard D;
Ivanov, Nikolai V;
Siksnys, Virgis;
Zeng, Lanying;
Severinov, Konstantin

Publication type:

Article

The tobacco genome sequence and its comparison with those of tomato and potato.

Published in:

Nature Communications, 2014, v. 5, n. 5, p. 3833, doi. 10.1038/ncomms4833

By:

Sierro, Nicolas;
Battey, James N.D.;
Ouadi, Sonia;
Bakaher, Nicolas;
Bovet, Lucien;
Willig, Adrian;
Goepfert, Simon;
Peitsch, Manuel C.;
Ivanov, Nikolai V.

Publication type:

Article

Differential Gene Expression and Unbalanced Homeolog Expression Bias in 4 Million-Year-Old Allopolyploids of Nicotiana Section Repandae.

Published in:

Genome Biology & Evolution, 2025, v. 17, n. 3, p. 1, doi. 10.1093/gbe/evaf029

By:

Ostovar, Talieh;
Landis, Jacob B;
McCarthy, Elizabeth W;
Sierro, Nicolas;
Litt, Amy

Publication type:

Article

Suppression of pyrrolidine ring biosynthesis and its effects on gene expression and subsequent accumulation of anatabine in leaves of tobacco (N. tabacum L.).

Published in:

BMC Genomics, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s12864-023-09588-8

By:

Kaminski, Kacper Piotr;
Bovet, Lucien;
Hilfiker, Aurore;
Laparra, Helene;
Schwaar, Joanne;
Sierro, Nicolas;
Lang, Gerhard;
De Palo, Damien;
Guy, Philippe Alexandre;
Laszlo, Csaba;
Goepfert, Simon;
Ivanov, Nikolai V.

Publication type:

Article

Reference genomes and transcriptomes of Nicotiana sylvestris and Nicotiana tomentosiformis.

Published in:

Genome Biology, 2013, v. 14, n. 6, p. 1, doi. 10.1186/gb-2013-14-6-r60

By:

Sierro, Nicolas;
Battey, James N.D.;
Ouadi, Sonia;
Bovet, Lucien;
Goepfert, Simon;
Bakaher, Nicolas;
Peitsch, Manuel C.;
Ivanov, Nikolai V.

Publication type:

Article

Tobacco Alkaloid Assessment in a DSS-Induced Colitis Mouse Model with a Fully Humanized Immune System.

Published in:

International Journal of Molecular Sciences, 2023, v. 24, n. 7, p. 6419, doi. 10.3390/ijms24076419

By:

Verhaeghe, Catherine;
Talikka, Marja;
Sewer, Alain;
Sierro, Nicolas;
Auberson, Mehdi;
Peric, Dariusz;
Bornand, David;
Dulize, Remi;
Guedj, Emmanuel;
Nef, Patrick;
Tabruyn, Sebastien P.;
Hoeng, Julia;
Peitsch, Manuel C.;
Lo Sasso, Giuseppe

Publication type:

Article

Crowdsourced benchmarking of taxonomic metagenome profilers: lessons learned from the sbv IMPROVER Microbiomics challenge.

Published in:

BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-08803-2

By:

Poussin, Carine;
Khachatryan, Lusine;
Sierro, Nicolas;
Narsapuram, Vijay Kumar;
Meyer, Fernando;
Kaikala, Vinay;
Chawla, Vandna;
Muppirala, Usha;
Kumar, Sunil;
Belcastro, Vincenzo;
Battey, James N. D.;
Scotti, Elena;
Boué, Stéphanie;
McHardy, Alice C.;
Peitsch, Manuel C.;
Ivanov, Nikolai V.;
Hoeng, Julia

Publication type:

Article

Polyploid Nicotiana section Suaveolentes originated by hybridization of two ancestral Nicotiana clades.

Published in:

Frontiers in Plant Science, 2023, p. 1, doi. 10.3389/fpls.2023.999887

By:

D'Andrea, Lucio;
Sierro, Nicolas;
Ouadi, Sonia;
Hasing, Tomas;
Rinaldi, Elijah;
Ivanov, Nikolai V.;
Bombarely, Aureliano

Publication type:

Article

Chromosome-level genome assemblies of Nicotiana tabacum, Nicotiana sylvestris, and Nicotiana tomentosiformis.

Published in:

Scientific Data, 2024, v. 11, n. 1, p. 1, doi. 10.1038/s41597-024-02965-2

By:

Sierro, Nicolas;
Auberson, Mehdi;
Dulize, Rémi;
Ivanov, Nikolai V.

Publication type:

Article

DBTBS: a database of transcriptional regulation in Bacillus subtilis containing upstream intergenic conservation information.

Published in:

Nucleic Acids Research, 2008, v. 36, p. D93, doi. 10.1093/nar/gkm910

By:

Sierro, Nicolas;
Makita, Yuko;
de Hoon, Michiel;
Nakai, Kenta

Publication type:

Article

DBTGR: a database of tunicate promoters and their regulatory elements.

Published in:

Nucleic Acids Research, 2006, v. 34, n. suppl 1, p. d552, doi. 10.1093/nar/gkj064

By:

Sierro, Nicolas;
Kusakabe, Takehiro;
Park, Keun-Joon;
Yamashita, Riu;
Kinoshita, Kengo;
Nakai, Kenta

Publication type:

Article

Genomic Insights into the Evolution of the Nicotine Biosynthesis Pathway in Tobacco.

Published in:

Plant Physiology, 2017, v. 174, n. 2, p. 999, doi. 10.1104/pp.17.00070

By:

Masataka Kajikawa;
Sierro, Nicolas;
Haruhiko Kawaguchi;
Bakaher, Nicolas;
Ivanov, Nikolai V.;
Takashi Hashimoto;
Tsubasa Shoji

Publication type:

Article