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Publisher Correction: BIRC2–BIRC3 amplification: a potentially druggable feature of a subset of head and neck cancers in patients with Fanconi anemia.
Published in:
2022
By:
- Roohollahi, Khashayar;
- de Jong, Yvonne;
- Pai, Govind;
- Zaini, Mohamad Amr;
- de Lint, Klaas;
- Sie, Daoud;
- Rooimans, Martin A.;
- Rockx, Davy;
- Hoskins, Elizabeth E.;
- Ameziane, Najim;
- Wolthuis, Rob;
- Joenje, Hans;
- Wells, Susanne I.;
- Dorsman, Josephine
Publication type:
Correction Notice
BIRC2–BIRC3 amplification: a potentially druggable feature of a subset of head and neck cancers in patients with Fanconi anemia.
Published in:
Scientific Reports, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41598-021-04042-9
By:
- Roohollahi, Khashayar;
- de Jong, Yvonne;
- Pai, Govind;
- Zaini, Mohamad Amr;
- de Lint, Klaas;
- Sie, Daoud;
- Rooimans, Martin A.;
- Rockx, Davy;
- Hoskins, Elizabeth E.;
- Ameziane, Najim;
- Wolthuis, Rob;
- Joenje, Hans;
- Wells, Susanne I.;
- Dorsman, Josephine
Publication type:
Article
HELLP babies link a novel lincRNA to the trophoblast cell cycle.
Published in:
2012
By:
- van Dijk M;
- Thulluru HK;
- Mulders J;
- Michel OJ;
- Poutsma A;
- Windhorst S;
- Kleiverda G;
- Sie D;
- Lachmeijer AM;
- Oudejans CB;
- van Dijk, Marie;
- Thulluru, Hari K;
- Mulders, Joyce;
- Michel, Omar J;
- Poutsma, Ankie;
- Windhorst, Sandra;
- Kleiverda, Gunilla;
- Sie, Daoud;
- Lachmeijer, Augusta M A;
- Oudejans, Cees B M
Publication type:
journal article
HELLP babie s link a novel lincRNA to the trophoblast cell cycle.
Published in:
Journal of Clinical Investigation, 2012, v. 122, n. 11, p. 4003, doi. 10.1172/JCI65171
By:
- van Dijk, Marie;
- Thulluru, Hari K.;
- Mulders, Joyce;
- Michel, Omar J.;
- Poutsma, Ankie;
- Windhorst, Sandra;
- Kleiverda, Gunilla;
- Sie, Daoud;
- Lachmeijer, Augusta M. A.;
- Oudejans, Cees B. M.
Publication type:
Article
Osteogenic transdifferentiation of primary human fibroblasts to osteoblast-like cells with human platelet lysate.
Published in:
Scientific Reports, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41598-022-18512-1
By:
- Cayami, Ferdy K.;
- Claeys, Lauria;
- de Ruiter, Ruben;
- Smilde, Bernard J.;
- Wisse, Lisanne;
- Bogunovic, Natalija;
- Riesebos, Elise;
- Eken, Lyra;
- Kooi, Irsan;
- Sistermans, Erik A.;
- Bravenboer, Nathalie;
- Pals, Gerard;
- Faradz, Sultana M. H.;
- Sie, Daoud;
- Eekhoff, E. Marelise W.;
- Micha, Dimitra
Publication type:
Article
Targeted sequencing by proximity ligation for comprehensive variant detection and local haplotyping.
Published in:
Nature Biotechnology, 2014, v. 32, n. 10, p. 1019, doi. 10.1038/nbt.2959
By:
- de Vree, Paula J P;
- de Wit, Elzo;
- Yilmaz, Mehmet;
- van de Heijning, Monique;
- Klous, Petra;
- Verstegen, Marjon J A M;
- Wan, Yi;
- Teunissen, Hans;
- Krijger, Peter H L;
- Geeven, Geert;
- Eijk, Paul P;
- Sie, Daoud;
- Ylstra, Bauke;
- Hulsman, Lorette O M;
- van Dooren, Marieke F;
- van Zutven, Laura J C M;
- van den Ouweland, Ans;
- Verbeek, Sjef;
- van Dijk, Ko Willems;
- Cornelissen, Marion
Publication type:
Article
Fusion transcripts and their genomic breakpoints in polyadenylated and ribosomal RNA–minus RNA sequencing data.
Published in:
GigaScience, 2021, v. 10, n. 12, p. 1, doi. 10.1093/gigascience/giab080
By:
- Hoogstrate, Youri;
- Komor, Malgorzata A;
- Böttcher, René;
- van Riet, Job;
- van de Werken, Harmen J G;
- van Lieshout, Stef;
- Hoffmann, Ralf;
- van den Broek, Evert;
- Bolijn, Anne S;
- Dits, Natasja;
- Sie, Daoud;
- van der Meer, David;
- Pepers, Floor;
- Bangma, Chris H;
- van Leenders, Geert J L H;
- Smid, Marcel;
- French, Pim J;
- Martens, John W M;
- van Workum, Wilbert;
- van der Spek, Peter J
Publication type:
Article
High Prevalence and Clinical Relevance of Genes Affected by Chromosomal Breaks in Colorectal Cancer.
Published in:
PLoS ONE, 2015, v. 10, n. 9, p. 1, doi. 10.1371/journal.pone.0138141
By:
- van den Broek, Evert;
- Dijkstra, Maurits J. J.;
- Krijgsman, Oscar;
- Sie, Daoud;
- Haan, Josien C.;
- Traets, Joleen J. H.;
- van de Wiel, Mark A.;
- Nagtegaal, Iris D.;
- Punt, Cornelis J. A.;
- Carvalho, Beatriz;
- Ylstra, Bauke;
- Abeln, Sanne;
- Meijer, Gerrit A.;
- Fijneman, Remond J. A.
Publication type:
Article
The T7-Primer Is a Source of Experimental Bias and Introduces Variability between Microarray Platforms.
Published in:
PLoS ONE, 2008, v. 3, n. 4, p. 1, doi. 10.1371/journal.pone.0001980
By:
- Kerkhoven, Ron M.;
- Sie, Daoud;
- Nieuwland, Marja;
- Heimerikx, Mike;
- De Ronde, Jorma;
- Brugman, Wim;
- Velds, Arno
Publication type:
Article
ShrinkBayes: a versatile R-package for analysis of count-based sequencing data in complex study designs.
Published in:
BMC Bioinformatics, 2014, v. 15, n. 1, p. 1, doi. 10.1186/1471-2105-15-116
By:
- van de Wiel, Mark A.;
- Neerincx, Maarten;
- Buffart, Tineke E.;
- Sie, Daoud;
- Verheul, Henk M. W.
Publication type:
Article
Molecular heterogeneity in human papillomavirus‐dependent and ‐independent vulvar carcinogenesis.
Published in:
Cancer Medicine, 2018, v. 7, n. 9, p. 4542, doi. 10.1002/cam4.1633
By:
- Swarts, Dorian R. A.;
- Voorham, Quirinus J. M.;
- van Splunter, Annina P.;
- Wilting, Saskia M.;
- Sie, Daoud;
- Pronk, Divera;
- van Beurden, Marc;
- Heideman, Daniëlle A. M.;
- Snijders, Peter J. F.;
- Meijer, Chris J. L. M.;
- Steenbergen, Renske D. M.;
- Bleeker, Maaike C. G.
Publication type:
Article
Landscape of chromosomal copy number aberrations in gangliogliomas and dysembryoplastic neuroepithelial tumours.
Published in:
Neuropathology & Applied Neurobiology, 2015, v. 41, n. 6, p. 743, doi. 10.1111/nan.12235
By:
- Prabowo, Avanita S.;
- Thuijl, Hinke Foka;
- Scheinin, Ilari;
- Sie, Daoud;
- Essen, Hendrik F.;
- Iyer, Anand M.;
- Spliet, Wim G.M.;
- Ferrier, Cyrille H.;
- Rijen, Peter C.;
- Veersema, Tim J.;
- Thom, Maria;
- Schouten‐van Meeteren, Annetteke Y.N.;
- Reijneveld, Jaap C.;
- Ylstra, Bauke;
- Wesseling, Pieter;
- Aronica, Eleonora
Publication type:
Article
No evidence for active human papillomavirus (HPV) in fields surrounding HPV-positive oropharyngeal tumors.
Published in:
2014
By:
- Rietbergen, Michelle M;
- Braakhuis, Boudewijn J M;
- Moukhtari, Nadia;
- Bloemena, Elisabeth;
- Brink, Arjen;
- Sie, Daoud;
- Ylstra, Bauke;
- Baatenburg de Jong, Robert J;
- Snijders, Peter J F;
- Brakenhoff, Ruud H;
- Leemans, C René
Publication type:
Journal Article
No evidence for active human papillomavirus ( HPV) in fields surrounding HPV-positive oropharyngeal tumors.
Published in:
Journal of Oral Pathology & Medicine, 2014, v. 43, n. 2, p. 137, doi. 10.1111/jop.12123
By:
- Rietbergen, Michelle M.;
- Braakhuis, Boudewijn J. M.;
- Moukhtari, Nadia;
- Bloemena, Elisabeth;
- Brink, Arjen;
- Sie, Daoud;
- Ylstra, Bauke;
- Baatenburg de Jong, Robert J.;
- Snijders, Peter J. F.;
- Brakenhoff, Ruud H.;
- Leemans, C. René
Publication type:
Article
Correction: Clonality analysis of pulmonary tumors by genome-wide copy number profiling.
Published in:
2019
By:
- Vincenten, Julien P. L.;
- van Essen, Hendrik F.;
- Lissenberg-Witte, Birgit I.;
- Bulkmans, Nicole W. J.;
- Krijgsman, Oscar;
- Sie, Daoud;
- Eijk, Paul P.;
- Smit, Egbert F.;
- Ylstra, Bauke;
- Thunnissen, Erik
Publication type:
Correction Notice
Clonality analysis of pulmonary tumors by genome-wide copy number profiling.
Published in:
PLoS ONE, 2019, v. 14, n. 10, p. 1, doi. 10.1371/journal.pone.0223827
By:
- Vincenten, Julien P. L.;
- van Essen, Hendrik F.;
- Lissenberg-Witte, Birgit I.;
- Bulkmans, Nicole W. J.;
- Krijgsman, Oscar;
- Sie, Daoud;
- Eijk, Paul P.;
- Smit, Egbert F.;
- Ylstra, Bauke;
- Thunnissen, Erik
Publication type:
Article
Circular RNA Sequencing of Maternal Platelets: A Novel Tool for the Identification of Pregnancy-Specific Biomarkers.
Published in:
Clinical Chemistry, 2021, v. 67, n. 3, p. 508, doi. 10.1093/clinchem/hvaa249
By:
- Oudejans, Cees;
- Manders, Vera;
- Visser, Allerdien;
- Keijser, Remco;
- Min, Naomi;
- Poutsma, Ankie;
- Mulders, Joyce;
- van den Berkmortel, Tarah;
- Wigman, Di-Jan;
- Blanken, Britt;
- Jongejan, Aldo;
- Pajkrt, Eva;
- de Boer, Marjon;
- Sistermans, Erik A.;
- Sie, Daoud;
- Best, Myron G.;
- Würdinger, Tom;
- Afink, Gijs
Publication type:
Article
Colorectal metastasis to the gallbladder mimicking a primary gallbladder malignancy: histopathological and molecular characteristics.
Published in:
Histopathology, 2019, v. 75, n. 3, p. 394, doi. 10.1111/his.13892
By:
- Bitter, Tessa J J;
- Linden, Ragna L A;
- Vliet, Shannon;
- Weren, Fieke;
- Sie, Daoud;
- Ylstra, Bauke;
- Linden, Hans C;
- Knijn, Nikki;
- Ligtenberg, Marjolijn J L;
- Post, Rachel S;
- Simmer, Femke;
- Nagtegaal, Iris D
Publication type:
Article
Spatial and temporal evolution of distal 10q deletion, a prognostically unfavorable event in diffuse low-grade gliomas.
Published in:
Genome Biology, 2014, v. 15, n. 9, p. 1, doi. 10.1186/s13059-014-0471-6
By:
- Van Thuijl, Hinke;
- Scheinin, Ilari;
- Daoud Sie;
- Alentorn, Agusti;
- Van Essen, Hendrik;
- Cordes, Martijn;
- Fleischeuer, Ruth;
- Gijtenbeek, Anja;
- Beute, Guus;
- Van den Brink, Wimar;
- Meijer, Gerrit;
- Havenith, Miek;
- Idbaih, Ahmed;
- Khê Hoang-Xuan;
- Mokhtari, Karima;
- Verhaak, Roel;
- Van der Valk, Paul;
- Van de Wiel, Mark;
- Heimans, Jan;
- Aronica, Eleonora
Publication type:
Article
The bivariate NRIP1/ZEB2 RNA marker permits non-invasive presymptomatic screening of pre-eclampsia.
Published in:
Scientific Reports, 2020, v. 10, n. 1, p. 1, doi. 10.1038/s41598-020-79008-4
By:
- Manders, Vera;
- Visser, Allerdien;
- Keijser, Remco;
- Min, Naomi;
- Poutsma, Ankie;
- Mulders, Joyce;
- van den Berkmortel, Tarah;
- Hortensius, Marjolein;
- Jongejan, Aldo;
- Pajkrt, Eva;
- Sistermans, Erik A.;
- Sie, Daoud;
- Best, Myron G.;
- Würdinger, Tom;
- de Boer, Marjon;
- Afink, Gijs;
- Oudejans, Cees
Publication type:
Article
Genome‐wide microRNA analysis of HPV‐positive self‐samples yields novel triage markers for early detection of cervical cancer.
Published in:
International Journal of Cancer, 2019, v. 144, n. 2, p. 372, doi. 10.1002/ijc.31855
By:
- Snoek, Barbara C.;
- Verlaat, Wina;
- Babion, Iris;
- Novianti, Putri W.;
- Wiel, Mark A.;
- Wilting, Saskia M.;
- Trommel, Nienke E.;
- Bleeker, Maaike C.G.;
- Massuger, Leon F.A.G.;
- Melchers, Willem J.G.;
- Sie, Daoud;
- Heideman, Daniëlle A.M.;
- Snijders, Peter J.F.;
- Meijer, Chris J.L.M.;
- Steenbergen, Renske D.M.
Publication type:
Article
Molecular pathways in post-colonoscopy versus detected colorectal cancers: results from a nested case-control study.
Published in:
2022
By:
- Bogie, Roel M. M.;
- le Clercq, Chantal M. C.;
- Voorham, Quirinus J. M.;
- Cordes, Martijn;
- Sie, Daoud;
- Rausch, Christian;
- van den Broek, Evert;
- de Vries, Sara D. J.;
- van Grieken, Nicole C. T.;
- Riedl, Robert G.;
- Sastrowijoto, Prapto;
- Speel, Ernst-Jan;
- Vos, Rein;
- Winkens, Bjorn;
- van Engeland, Manon;
- Ylstra, Bauke;
- Meijer, Gerrit A.;
- Masclee, Ad A. M.;
- Carvalho, Beatriz
Publication type:
journal article
Somatic mutation in PIK3CA is a late event in cervical carcinogenesis.
Published in:
Journal of Pathology: Clinical Research, 2015, v. 1, n. 4, p. 207, doi. 10.1002/cjp2.27
By:
- Verlaat, Wina;
- Snijders, Peter J. F.;
- van Moorsel, Marinda I. H.;
- Bleeker, Maaike;
- Rozendaal, Lawrence;
- Sie, Daoud;
- Ylstra, Bauke;
- Meijer, Chris J. L. M.;
- Steenbergen, Renske D. M.;
- Heideman, Daniëlle A. M.
Publication type:
Article
Performance of amplicon-based next generation DNA sequencing for diagnostic gene mutation profiling in oncopathology.
Published in:
Cellular Oncology (2211-3428), 2014, v. 37, n. 5, p. 353, doi. 10.1007/s13402-014-0196-2
By:
- Sie, Daoud;
- Snijders, Peter;
- Meijer, Gerrit;
- Doeleman, Marije;
- Moorsel, Marinda;
- Essen, Hendrik;
- Eijk, Paul;
- Grünberg, Katrien;
- Grieken, Nicole;
- Thunnissen, Erik;
- Verheul, Henk;
- Smit, Egbert;
- Ylstra, Bauke;
- Heideman, Daniëlle
Publication type:
Article
A Barcode Screen for Epigenetic Regulators Reveals a Role for the NuB4/HAT-B Histone Acetyltransferase Complex in Histone Turnover.
Published in:
PLoS Genetics, 2011, v. 7, n. 10, p. 1, doi. 10.1371/journal.pgen.1002284
By:
- Verzijlbergen, Kitty F.;
- van Welsem, Tibor;
- Sie, Daoud;
- Lenstra, Tineke L.;
- Turner, Daniel J.;
- Holstege, Frank C. P.;
- Kerkhoven, Ron M.;
- van Leeuwen, Fred
Publication type:
Article
Combination of a six microRNA expression profile with four clinicopathological factors for response prediction of systemic treatment in patients with advanced colorectal cancer.
Published in:
PLoS ONE, 2018, v. 13, n. 8, p. 1, doi. 10.1371/journal.pone.0201809
By:
- Neerincx, Maarten;
- Poel, Dennis;
- Sie, Daoud L. S.;
- van Grieken, Nicole C. T.;
- Shankaraiah, Ram C.;
- van der Wolf - de Lijster, Floor S. W.;
- van Waesberghe, Jan-Hein T. M.;
- Burggraaf, Jan-Dirk;
- Eijk, Paul P.;
- Verhoef, Cornelis;
- Ylstra, Bauke;
- Meijer, Gerrit A.;
- van de Wiel, Mark A.;
- Buffart, Tineke E.;
- Verheul, Henk M. W.
Publication type:
Article
ACE: absolute copy number estimation from low-coverage whole-genome sequencing data.
Published in:
Bioinformatics, 2019, v. 35, n. 16, p. 2847, doi. 10.1093/bioinformatics/bty1055
By:
- Poell, Jos B;
- Mendeville, Matias;
- Sie, Daoud;
- Brink, Arjen;
- Brakenhoff, Ruud H;
- Ylstra, Bauke
Publication type:
Article
Mapping the Response of Human Osteocytes in Native Matrix to Mechanical Loading Using RNA Sequencing.
Published in:
JBMR Plus, 2023, v. 7, n. 4, p. 1, doi. 10.1002/jbm4.10721
By:
- Zhang, Chen;
- van Essen, Huib W.;
- Sie, Daoud;
- Micha, Dimitra;
- Pals, Gerard;
- Klein‐Nulend, Jenneke;
- Bravenboer, Nathalie
Publication type:
Article
Diagnosis of Fanconi Anemia: Mutation Analysis by Next-Generation Sequencing.
Published in:
Anemia (20901267), 2012, p. 1, doi. 10.1155/2012/132856
By:
- Ameziane, Najim;
- Sie, Daoud;
- Dentro, Stefan;
- Ariyurek, Yavuz;
- Kerkhoven, Lianne;
- Joenje, Hans;
- Dorsman, Josephine C.;
- Ylstra, Bauke;
- Gille, Johan J. P.;
- Sistermans, Erik A.;
- De Winter, Johan P.
Publication type:
Article
Proper genomic profiling of (BRCA1-mutated) basal-like breast carcinomas requires prior removal of tumor infiltrating lymphocytes.
Published in:
Molecular Oncology, 2015, v. 9, n. 4, p. 877, doi. 10.1016/j.molonc.2014.12.012
By:
- Massink, Maarten P.G.;
- Kooi, Irsan E.;
- van Mil, Saskia E.;
- Jordanova, Ekaterina S.;
- Ameziane, Najim;
- Dorsman, Josephine C.;
- van Beek, Daphne M.;
- van der Voorn, J. Patrick;
- Sie, Daoud;
- Ylstra, Bauke;
- van Deurzen, Carolien H.M.;
- Martens, John W.;
- Smid, Marcel;
- Sieuwerts, Anieta M.;
- de Weerd, Vanja;
- Foekens, John A.;
- van den Ouweland, Ans M.W.;
- van Dyk, Ewald;
- Nederlof, Petra M.;
- Waisfisz, Quinten
Publication type:
Article

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