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De novo mutational signature discovery in tumor genomes using SparseSignatures.
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- PLoS Computational Biology, 2021, v. 17, n. 6, p. 1, doi. 10.1371/journal.pcbi.1009119
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- Article
Aquila enables reference-assisted diploid personal genome assembly and comprehensive variant detection based on linked reads.
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- Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-21395-x
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- Article
Aquila_stLFR: diploid genome assembly based structural variant calling package for stLFR linked-reads.
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- Bioinformatics Advances, 2021, v. 1, n. 1, p. 1, doi. 10.1093/bioadv/vbab007
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- Article
Assessment of human diploid genome assembly with 10x Linked-Reads data.
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- GigaScience, 2019, v. 8, n. 11, p. N.PAG, doi. 10.1093/gigascience/giz141
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- Article
Comprehensive genomic characterization of breast tumors with BRCA1 and BRCA2 mutations.
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- BMC Medical Genomics, 2019, v. 12, n. 1, p. N.PAG, doi. 10.1186/s12920-019-0545-0
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- Article
High-quality genome sequences of uncultured microbes by assembly of read clouds.
- Published in:
- Nature Biotechnology, 2018, v. 36, n. 11, p. 1067, doi. 10.1038/nbt.4266
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- Article
Multi-omic tumor data reveal diversity of molecular mechanisms that correlate with survival.
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- Nature Communications, 2018, v. 9, p. 1, doi. 10.1038/s41467-018-06921-8
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- Article
HAPDeNovo: a haplotype-based approach for filtering and phasing <italic>de novo</italic> mutations in linked read sequencing data.
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- BMC Genomics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12864-018-4867-7
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- Article
A research roadmap for next-generation sequencing informatics.
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- Science Translational Medicine, 2016, v. 8, n. 335, p. 1, doi. 10.1126/scitranslmed.aaf7314
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- Article
svviz: a read viewer for validating structural variants.
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- Bioinformatics, 2015, v. 31, n. 24, p. 3994, doi. 10.1093/bioinformatics/btv478
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- Article
Constraint and divergence of global gene expression in the mammalian embryo.
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- eLife, 2015, p. 1, doi. 10.7554/eLife.05538
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- Article
Cell-lineage heterogeneity and driver mutation recurrence in pre-invasive breast neoplasia.
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- Genome Medicine, 2015, v. 7, n. 1, p. 1, doi. 10.1186/s13073-015-0146-2
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- Article
The future of sequencing: convergence of intelligent design and market Darwinism.
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- Genome Biology, 2014, v. 15, n. 3, p. 1, doi. 10.1186/gb4168
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- Article
Transcription-factor occupancy at HOT regions quantitatively predicts RNA polymerase recruitment in five human cell lines.
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- BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-720
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- Article
Determinants of nucleosome organization in primary human cells.
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- Nature, 2011, v. 474, n. 7352, p. 516, doi. 10.1038/nature10002
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- Article
Identifying a High Fraction of the Human Genome to be under Selective Constraint Using GERP++.
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- PLoS Computational Biology, 2010, v. 6, n. 12, p. 1, doi. 10.1371/journal.pcbi.1001025
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- Article
Single-nucleotide evolutionary constraint scores highlight disease-causing mutations.
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- Nature Methods, 2010, v. 7, n. 4, p. 250, doi. 10.1038/nmeth0410-250
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- Article
An in vitro-identified high-affinity nucleosome-positioning signal is capable of transiently positioning a nucleosome in vivo.
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- Epigenetics & Chromatin, 2010, v. 3, p. 13, doi. 10.1186/1756-8935-3-13
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- Article
3'-End Sequencing for Expression Quantification (3SEQ) from Archival Tumor Samples.
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- PLoS ONE, 2010, v. 5, n. 1, p. 1, doi. 10.1371/journal.pone.0008768
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- Article
SHRiMP: Accurate Mapping of Short Color-space Reads.
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- PLoS Computational Biology, 2009, v. 5, n. 5, p. 1, doi. 10.1371/journal.pcbi.1000386
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- Article
Genome-wide analysis of transcription factor binding sites based on ChIP-Seq data.
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- Nature Methods, 2008, v. 5, n. 9, p. 829, doi. 10.1038/nmeth.1246
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- Article
Identification of the Otopetrin Domain, a conserved domain in vertebrate otopetrins and invertebrate otopetrin-like family members.
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- BMC Evolutionary Biology, 2008, v. 8, p. 1, doi. 10.1186/1471-2148-8-41
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- Article
ABC: software for interactive browsing of genomic multiple sequence alignment data.
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- BMC Bioinformatics, 2004, v. 5, p. 192, doi. 10.1186/1471-2105-5-192
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- Article
A novel member of the F-box/WD40 gene family, encoding dactylin, is disrupted in the mouse dactylaplasia mutant.
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- Nature Genetics, 1999, v. 23, n. 1, p. 104, doi. 10.1038/12709
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- Article
Serrate2 is disrupted in the mouse limb-development mutant syndactylism.
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- Nature, 1997, v. 389, n. 6652, p. 722, doi. 10.1038/39587
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- Article