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Roles for mycobacterial DinB2 in frameshift and substitution mutagenesis.
- Published in:
- eLife, 2023, p. 1, doi. 10.7554/eLife.83094
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- Article
Cellular responses to long-term phosphate starvation of fission yeast: Maf1 determines fate choice between quiescence and death associated with aberrant tRNA biogenesis.
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- Nucleic Acids Research, 2023, v. 51, n. 7, p. 3094, doi. 10.1093/nar/gkad063
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Mycobacterial helicase Lhr abets resistance to DNA crosslinking agents mitomycin C and cisplatin.
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- Nucleic Acids Research, 2023, v. 51, n. 1, p. 218, doi. 10.1093/nar/gkac1222
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Distinctive roles of translesion polymerases DinB1 and DnaE2 in diversification of the mycobacterial genome through substitution and frameshift mutagenesis.
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- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-32022-8
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Genetic screen for suppression of transcriptional interference reveals fission yeast 14–3–3 protein Rad24 as an antagonist of precocious Pol2 transcription termination.
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- Nucleic Acids Research, 2022, v. 50, n. 2, p. 803, doi. 10.1093/nar/gkab1263
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- Article
Structure–activity relationships at a nucleobase-stacking tryptophan required for chemomechanical coupling in the DNA resecting motor-nuclease AdnAB.
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- Nucleic Acids Research, 2022, v. 50, n. 2, p. 952, doi. 10.1093/nar/gkab1270
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NMR solution structures of Runella slithyformis RNA 2′-phosphotransferase Tpt1 provide insights into NAD<sup>+</sup> binding and specificity.
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- Nucleic Acids Research, 2021, v. 49, n. 17, p. 9607, doi. 10.1093/nar/gkab241
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Oligomeric quaternary structure of Escherichia coli and Mycobacterium smegmatis Lhr helicases is nucleated by a novel C-terminal domain composed of five winged-helix modules.
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- Nucleic Acids Research, 2021, v. 49, n. 7, p. 3876, doi. 10.1093/nar/gkab145
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Structure-function analysis of fission yeast cleavage and polyadenylation factor (CPF) subunit Ppn1 and its interactions with Dis2 and Swd22.
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- PLoS Genetics, 2021, v. 17, n. 3, p. 1, doi. 10.1371/journal.pgen.1009452
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A genetic screen for suppressors of hyper-repression of the fission yeast PHO regulon by Pol2 CTD mutation T4A implicates inositol 1-pyrophosphates as agonists of precocious lncRNA transcription termination.
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- Nucleic Acids Research, 2020, v. 48, n. 19, p. 10739, doi. 10.1093/nar/gkaa776
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Transcriptional interference at tandem lncRNA and protein-coding genes: an emerging theme in regulation of cellular nutrient homeostasis.
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- Nucleic Acids Research, 2020, v. 48, n. 15, p. 8243, doi. 10.1093/nar/gkaa630
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Caveat mutator: alanine substitutions for conserved amino acids in RNA ligase elicit unexpected rearrangements of the active site for lysine adenylylation.
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- Nucleic Acids Research, 2020, v. 48, n. 10, p. 5603, doi. 10.1093/nar/gkaa238
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Genetic interactions and transcriptomics implicate fission yeast CTD prolyl isomerase Pin1 as an agent of RNA 3′ processing and transcription termination that functions via its effects on CTD phosphatase Ssu72.
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- Nucleic Acids Research, 2020, v. 48, n. 9, p. 4811, doi. 10.1093/nar/gkaa212
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Mycobacterial DNA polymerase I: activities and crystal structures of the POL domain as apoenzyme and in complex with a DNA primer-template and of the full-length FEN/EXO–POL enzyme.
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- Nucleic Acids Research, 2020, v. 48, n. 6, p. 3165, doi. 10.1093/nar/gkaa075
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Atomic structures of the RNA end-healing 5′-OH kinase and 2′,3′-cyclic phosphodiesterase domains of fungal tRNA ligase: conformational switches in the kinase upon binding of the GTP phosphate donor.
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- Nucleic Acids Research, 2019, v. 47, n. 22, p. 11826, doi. 10.1093/nar/gkz1049
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Inositol pyrophosphates impact phosphate homeostasis via modulation of RNA 3′ processing and transcription termination.
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- Nucleic Acids Research, 2019, v. 47, n. 16, p. 8452, doi. 10.1093/nar/gkz567
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Structure and two-metal mechanism of fungal tRNA ligase.
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- Nucleic Acids Research, 2019, v. 47, n. 3, p. 1428, doi. 10.1093/nar/gky1275
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Structure of tRNA splicing enzyme Tpt1 illuminates the mechanism of RNA 2′-PO<sub>4</sub> recognition and ADP-ribosylation.
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- Nature Communications, 2019, v. 10, n. 1, p. 1, doi. 10.1038/s41467-018-08211-9
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Domain Requirements and Genetic Interactions of the Mud1 Subunit of the Saccharomyces cerevisiae U1 snRNP.
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- G3: Genes | Genomes | Genetics, 2019, v. 9, n. 1, p. 145, doi. 10.1534/g3.118.200781
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Distinctive structural basis for DNA recognition by the fission yeast Zn2Cys6 transcription factor Pho7 and its role in phosphate homeostasis.
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- Nucleic Acids Research, 2018, v. 46, n. 21, p. 11262, doi. 10.1093/nar/gky827
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NAD+-dependent synthesis of a 5′-phospho-ADP-ribosylated RNA/DNA cap by RNA 2′-phosphotransferase Tpt1.
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- Nucleic Acids Research, 2018, v. 46, n. 18, p. 9617, doi. 10.1093/nar/gky792
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Crystal structure and mutational analysis of Mycobacterium smegmatis FenA highlight active site amino acids and three metal ions essential for flap endonuclease and 5' exonuclease activities.
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- Nucleic Acids Research, 2018, v. 46, n. 8, p. 4164, doi. 10.1093/nar/gky238
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Structure of mycobacterial 3'-to-5' RNA:DNA helicase Lhr bound to a ssDNA tracking strand highlights distinctive features of a novel family of bacterial helicases.
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- Nucleic Acids Research, 2018, v. 46, n. 1, p. 442, doi. 10.1093/nar/gkx1163
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Structural basis for the GTP specificity of the RNA kinase domain of fungal tRNA ligase.
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- Nucleic Acids Research, 2017, v. 45, n. 22, p. 12945, doi. 10.1093/nar/gkx1159
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Intratumoral delivery of inactivated modified vaccinia virus Ankara (iMVA) induces systemic antitumor immunity via STING and Batf3-dependent dendritic cells.
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- Science Immunology, 2017, v. 2, n. 11, p. 1, doi. 10.1126/sciimmunol.aal1713
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Deletion of the rnlgene encoding a nick-sealing RNA ligase sensitizes Deinococcus radioduransto ionizing radiation.
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- Nucleic Acids Research, 2017, v. 45, n. 7, p. 3812, doi. 10.1093/nar/gkx038
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Homologous recombination mediated by the mycobacterial AdnAB helicase without end resection by the AdnAB nucleases.
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- Nucleic Acids Research, 2017, v. 45, n. 2, p. 762, doi. 10.1093/nar/gkw1130
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Division of labor among Mycobacterium smegmatis RNase H enzymes: RNase H1 activity of RnhA or RnhC is essential for growth whereas RnhB and RnhA guard against killing by hydrogen peroxide in stationary phase.
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- Nucleic Acids Research, 2017, v. 45, n. 1, p. 1, doi. 10.1093/nar/gkw1046
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Phospho-site mutants of the RNA Polymerase II C-terminal domain alter subtelomeric gene expression and chromatin modification state in fission yeast.
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- Nucleic Acids Research, 2016, v. 44, n. 19, p. 9180, doi. 10.1093/nar/gkw603
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Parallel analysis of ribonucleotide-dependent deletions produced by yeast Top1 in vitro and in vivo.
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- Nucleic Acids Research, 2016, v. 44, n. 16, p. 7714, doi. 10.1093/nar/gkw495
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Kinetic mechanism and fidelity of nick sealing by Escherichia coli NAD<sup>+</sup>-dependent DNA ligase (LigA).
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- Nucleic Acids Research, 2016, v. 44, n. 5, p. 2298, doi. 10.1093/nar/gkw049
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Functional interaction of Rpb1 and Spt5 C-terminal domains in co-transcriptional histone modification.
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- Nucleic Acids Research, 2015, v. 43, n. 20, p. 9766, doi. 10.1093/nar/gkv837
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DNA<sub>3'</sub>pp<sub>5'</sub>G de-capping activity of aprataxin: effect of cap nucleoside analogs and structural basis for guanosine recognition.
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- Nucleic Acids Research, 2015, v. 43, n. 12, p. 6075, doi. 10.1093/nar/gkv501
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Two Routes to Genetic Suppression of RNA Trimethylguanosine Cap Deficiency via C-Terminal Truncation of U1 snRNP Subunit Snp1 or Overexpression of RNA Polymerase Subunit Rpo26.
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- G3: Genes | Genomes | Genetics, 2015, v. 5, n. 7, p. 1361, doi. 10.1534/g3.115.016675
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Effects of DNA<sub>3'</sub>pp<sub>5'</sub>G capping on 3' end repair reactions and of an embedded pyrophosphate-linked guanylate on ribonucleotide surveillance.
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- Nucleic Acids Research, 2015, v. 43, n. 6, p. 3197, doi. 10.1093/nar/gkv179
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Mycobacterium smegmatis DinB2 misincorporates deoxyribonucleotides and ribonucleotides during templated synthesis and lesion bypass.
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- Nucleic Acids Research, 2014, v. 42, n. 20, p. 12722, doi. 10.1093/nar/gku1027
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Crystal structure, mutational analysis and RNA-dependent ATPase activity of the yeast DEAD-box pre-mRNA splicing factor Prp28.
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- Nucleic Acids Research, 2014, v. 42, n. 20, p. 12885, doi. 10.1093/nar/gku930
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Characterization of three mycobacterial DinB (DNA polymerase IV) paralogs highlights DinB2 as naturally adept at ribonucleotide incorporation.
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- Nucleic Acids Research, 2014, v. 42, n. 17, p. 11056, doi. 10.1093/nar/gku752
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Structure-function analysis of the Yhc1 subunit of yeast U1 snRNP and genetic interactions of Yhc1 with Mud2, Nam8, Mud1, Tgs1, U1 snRNA, SmD3 and Prp28.
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- Nucleic Acids Research, 2014, v. 42, n. 7, p. 4697, doi. 10.1093/nar/gku097
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Modified Vaccinia Virus Ankara Triggers Type I IFN Production in Murine Conventional Dendritic Cells via a cGAS/STING-Mediated Cytosolic DNA-Sensing Pathway.
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- PLoS Pathogens, 2014, v. 10, n. 4, p. 1, doi. 10.1371/journal.ppat.1003989
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Structures of bacterial polynucleotide kinase in a Michaelis complex with GTP•Mg2+ and 5′-OH oligonucleotide and a product complex with GDP•Mg2+ and 5′-PO4 oligonucleotide reveal a mechanism of general acid-base catalysis and the ...
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- Nucleic Acids Research, 2014, v. 42, n. 2, p. 1152, doi. 10.1093/nar/gkt936
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The PAF Complex and Prf1/Rtf1 Delineate Distinct Cdk9-Dependent Pathways Regulating Transcription Elongation in Fission Yeast.
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- PLoS Genetics, 2013, v. 9, n. 12, p. 1, doi. 10.1371/journal.pgen.1004029
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Structure-function analysis of the 5′ end of yeast U1 snRNA highlights genetic interactions with the Msl5•Mud2 branchpoint-binding complex and other spliceosome assembly factors.
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- Nucleic Acids Research, 2013, v. 41, n. 15, p. 7485, doi. 10.1093/nar/gkt490
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Structure and mechanism of the 2′,3′ phosphatase component of the bacterial Pnkp-Hen1 RNA repair system.
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- Nucleic Acids Research, 2013, v. 41, n. 11, p. 5864, doi. 10.1093/nar/gkt221
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A dual role for mycobacterial RecO in RecA-dependent homologous recombination and RecA-independent single-strand annealing.
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- Nucleic Acids Research, 2013, v. 41, n. 4, p. 2284, doi. 10.1093/nar/gks1298
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Mechanism of RNA 2′,3′-cyclic phosphate end healing by T4 polynucleotide kinase–phosphatase.
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- Nucleic Acids Research, 2013, v. 41, n. 1, p. 355, doi. 10.1093/nar/gks977
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The sequential 2′,3′-cyclic phosphodiesterase and 3′-phosphate/5′-OH ligation steps of the RtcB RNA splicing pathway are GTP-dependent.
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- Nucleic Acids Research, 2012, v. 40, n. 17, p. 8558, doi. 10.1093/nar/gks558
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Mycobacterium smegmatis SftH exemplifies a distinctive clade of superfamily II DNA-dependent ATPases with 3′ to 5′ translocase and helicase activities.
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- Nucleic Acids Research, 2012, v. 40, n. 15, p. 7465, doi. 10.1093/nar/gks417
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Structure–function analysis and genetic interactions of the yeast branchpoint binding protein Msl5.
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- Nucleic Acids Research, 2012, v. 40, n. 10, p. 4539, doi. 10.1093/nar/gks049
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Mycobacterium smegmatis RqlH defines a novel clade of bacterial RecQ-like DNA helicases with ATP-dependent 3′–5′ translocase and duplex unwinding activities.
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- Nucleic Acids Research, 2012, v. 40, n. 10, p. 4604, doi. 10.1093/nar/gks046
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- Article