Works by Shulan Tian

Results: 36

Genetic variants related to successful migraine prophylaxis with verapamil.

Published in:

Molecular Genetics & Genomic Medicine, 2021, v. 9, n. 6, p. 1, doi. 10.1002/mgg3.1680

By:

Cutrer, Fred Michael;
Moyer, Ann M.;
Atkinson, Elizabeth J.;
Wang, Liguo;
Tian, Shulan;
Wu, Yanhong;
Garza, Ivan;
Robertson, Carrie E.;
Huebert, Carey A.;
Moore, Brenda E.;
Klein, Christopher J.

Publication type:

Article

A study of the relationships between oligonucleotide properties and hybridization signal intensities from NimbleGen microarray datasets.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 9, p. 2926, doi. 10.1093/nar/gkn133

By:

Wei, Hairong;
Kuan, Pei Fen;
Tian, Shulan;
Yang, Chuhu;
Nie, Jeff;
Sengupta, Srikumar;
Ruotti, Victor;
Jonsdottir, Gudrun A.;
Keles, Sunduz;
Thomson, James A.;
Stewart, Ron

Publication type:

Article

Abundant transcriptomic alterations in the human cerebellum of patients with a C9orf72 repeat expansion.

Published in:

Acta Neuropathologica, 2024, v. 147, n. 1, p. 1, doi. 10.1007/s00401-024-02720-2

By:

Udine, Evan;
DeJesus-Hernandez, Mariely;
Tian, Shulan;
das Neves, Sofia Pereira;
Crook, Richard;
Finch, NiCole A.;
Baker, Matthew C.;
Pottier, Cyril;
Graff-Radford, Neill R.;
Boeve, Bradley F.;
Petersen, Ronald C.;
Knopman, David S.;
Josephs, Keith A.;
Oskarsson, Björn;
Da Mesquita, Sandro;
Petrucelli, Leonard;
Gendron, Tania F.;
Dickson, Dennis W.;
Rademakers, Rosa;
van Blitterswijk, Marka

Publication type:

Article

Distribution of clonal hematopoiesis of indeterminate potential (CHIP) is not associated with race in patients with plasma cell neoplasms.

Published in:

2022

By:

Gagnon, Marie-France;
Tian, Shulan;
Geyer, Susan;
Sharma, Neeraj;
Vachon, Celine M.;
Kusne, Yael;
Bergsagel, P. Leif;
Stewart, A. Keith;
Rajkumar, S. Vincent;
Kumar, Shaji;
Ailawadhi, Sikander;
Baughn, Linda B.

Publication type:

Letter

"Direct to Drug" screening as a precision medicine tool in multiple myeloma.

Published in:

Blood Cancer Journal, 2020, v. 10, n. 5, p. 1, doi. 10.1038/s41408-020-0320-7

By:

Bonolo de Campos, Cecilia;
Meurice, Nathalie;
Petit, Joachim L.;
Polito, Alysia N.;
Zhu, Yuan Xiao;
Wang, Panwen;
Bruins, Laura A.;
Wang, Xuewei;
Lopez Armenta, Ilsel D.;
Darvish, Susie A.;
Ahmann, Greg J.;
Henderson, Kimberly J.;
Tian, Shulan;
Kruse, Jonas J.;
Stewart, William M.;
Larsen, Jeremy T.;
Reeder, Craig B.;
Dingli, David;
Kapoor, Prashant;
Kumar, Shaji K.

Publication type:

Article

Epigenetic alteration contributes to the transcriptional reprogramming in T-cell prolymphocytic leukemia.

Published in:

Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-87890-9

By:

Tian, Shulan;
Zhang, Henan;
Zhang, Pan;
Kalmbach, Michael;
Lee, Jeong-Heon;
Ordog, Tamas;
Hampel, Paul J.;
Call, Timothy G.;
Witzig, Thomas E.;
Kay, Neil E.;
Klee, Eric W.;
Slager, Susan L.;
Yan, Huihuang;
Ding, Wei

Publication type:

Article

The development of a rapid patient-derived xenograft model to predict chemotherapeutic drug sensitivity/resistance in malignant glial tumors.

Published in:

Neuro-Oncology, 2023, v. 25, n. 9, p. 1605, doi. 10.1093/neuonc/noad047

By:

Charbonneau, Martine;
Harper, Kelly;
Brochu-Gaudreau, Karine;
Perreault, Alexis;
Roy, Laurent-Olivier;
Lucien, Fabrice;
Tian, Shulan;
Fortin, David;
Dubois, Claire M

Publication type:

Article

PRC2 specifies ectoderm lineages and maintains pluripotency in primed but not naïve ESCs.

Published in:

Nature Communications, 2017, v. 8, n. 1, p. 1, doi. 10.1038/s41467-017-00668-4

By:

Yongli Shan;
Zechuan Liang;
Qi Xing;
Tian Zhang;
Bo Wang;
Shulan Tian;
Wenhao Huang;
Yanqi Zhang;
Jiao Yao;
Yanling Zhu;
Ke Huang;
Yujian Liu;
Xiaoshan Wang;
Qianyu Chen;
Jian Zhang;
Bizhi Shang;
Shengbiao Li;
Xi Shi;
Baojian Liao;
Cong Zhang

Publication type:

Article

Comparative RNA-seq Analysis in the Unsequenced Axolotl: The Oncogene Burst Highlights Early Gene Expression in the Blastema.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 3, p. 1, doi. 10.1371/journal.pcbi.1002936

By:

Stewart, Ron;
Rascón, Cynthia Alexander;
Shulan Tian;
Nie, Jeff;
Barry, Chris;
Li-Fang Chu;
Ardalani, Hamisha;
Wagner, Ryan J.;
Probasco, Mitchell D.;
Bolin, Jennifer M.;
Ning Leng;
Sengupta, Srikumar;
Volkmer, Michael;
Habermann, Bianca;
Tanaka, Elly M.;
Thomson, James A.;
Dewey, Colin N.

Publication type:

Article

Tumor mutational load predicts time to first treatment in chronic lymphocytic leukemia (CLL) and monoclonal B‐cell lymphocytosis beyond the CLL international prognostic index.

Published in:

American Journal of Hematology, 2020, v. 95, n. 8, p. 906, doi. 10.1002/ajh.25831

By:

Kleinstern, Geffen;
O'Brien, Daniel R.;
Li, Xing;
Tian, Shulan;
Kabat, Brian F.;
Rabe, Kari G.;
Norman, Aaron D.;
Yan, Huihuang;
Vachon, Celine M.;
Boddicker, Nicholas J.;
Call, Timothy G.;
Parikh, Sameer A.;
Bruins, Laura;
Bonolo de Campos, Cecilia;
Leis, Jose F.;
Shanafelt, Tait D.;
Ding, Wei;
Cerhan, James R.;
Kay, Neil E.;
Slager, Susan L.

Publication type:

Article

Chronic lymphocytic leukemia (CLL) risk is mediated by multiple enhancer variants within CLL risk loci.

Published in:

Human Molecular Genetics, 2020, v. 29, n. 16, p. 2761, doi. 10.1093/hmg/ddaa165

By:

Huihuang Yan;
Shulan Tian;
Kleinstern, Geffen;
Zhiquan Wang;
Jeong-Heon Lee;
Boddicker, Nicholas J.;
Cerhan, James R.;
Kay, Neil E.;
Braggio, Esteban;
Slager, Susan L.

Publication type:

Article

ATM inhibition exploits checkpoint defects and ATM-dependent double strand break repair in TP53-mutant glioblastoma.

Published in:

Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-49316-8

By:

Laverty, Daniel J.;
Gupta, Shiv K.;
Bradshaw, Gary A.;
Hunter, Alexander S.;
Carlson, Brett L.;
Calmo, Nery Matias;
Chen, Jiajia;
Tian, Shulan;
Sarkaria, Jann N.;
Nagel, Zachary D.

Publication type:

Article

Identification of missing variants by combining multiple analytic pipelines.

Published in:

BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2151-0

By:

Ren, Yingxue;
Reddy, Joseph S.;
Pottier, Cyril;
Sarangi, Vivekananda;
Tian, Shulan;
Sinnwell, Jason P.;
McDonnell, Shannon K.;
Biernacka, Joanna M.;
Carrasquillo, Minerva M.;
Ross, Owen A.;
Ertekin-Taner, Nilüfer;
Rademakers, Rosa;
Hudson, Matthew;
Mainzer, Liudmila Sergeevna;
Asmann, Yan W.

Publication type:

Article

Clonal dynamics of Richter transformation in chronic lymphocytic leukemia.

Published in:

Hematological Oncology, 2024, v. 42, n. 4, p. 1, doi. 10.1002/hon.3282

By:

Wang, Hanyin;
Tian, Shulan;
Secreto, Charla R.;
Sinha, Sutapa;
Shi, Min;
Call, Timothy;
Wang, Yucai;
Parikh, Sameer A.;
Kenderian, Saad S.;
He, Rong;
Leis, Jose F.;
VanDyke, Daniel L.;
Klee, Eric W.;
Slager, Susan L.;
Braggio, Esteban;
Yan, Huihuang;
Ding, Wei

Publication type:

Article

Differential transcriptomic profiling in ibrutinib‐naïve versus ibrutinib‐resistant Richter syndrome.

Published in:

Hematological Oncology, 2022, v. 40, n. 2, p. 302, doi. 10.1002/hon.2950

By:

Wang, Hanyin;
Tian, Shulan;
Zhao, Qing;
Blumenschein, Wendy;
Yearley, Jennifer H.;
Secreto, Charla R.;
Sinha, Sutapa;
Call, Timothy G.;
Wang, Yucai;
Parikh, Sameer A.;
Kenderian, Saad S.;
He, Rong;
Leis, Jose F.;
Shi, Min;
Van Dyke, Daniel L.;
Kay, Neil E.;
Slager, Susan L.;
Braggio, Esteban;
Yan, Huihuang;
Ding, Wei

Publication type:

Article

RBBP4-p300 axis modulates expression of genes essential for cell survival and is a potential target for therapy in glioblastoma.

Published in:

Neuro-Oncology, 2022, v. 24, n. 8, p. 1261, doi. 10.1093/neuonc/noac051

By:

Mladek, Ann C;
Yan, Huihuang;
Tian, Shulan;
Decker, Paul A;
Burgenske, Danielle M;
Bakken, Katrina;
Hu, Zeng;
He, Lihong;
Connors, Margaret A;
Carlson, Brett L;
Wilson, Jonathan;
Bommi-Reddy, Archana;
Conery, Andy;
Eckel-Passow, Jeanette E;
Sarkaria, Jann N;
Kitange, Gaspar J

Publication type:

Article

Heterogeneous delivery across the blood-brain barrier limits the efficacy of an EGFR-targeting antibody drug conjugate in glioblastoma.

Published in:

Neuro-Oncology, 2021, v. 23, n. 12, p. 2042, doi. 10.1093/neuonc/noab133

By:

Marin, Bianca-Maria;
Porath, Kendra A;
Jain, Sonia;
Kim, Minjee;
Conage-Pough, Jason E;
Oh, Ju-Hee;
Miller, Caitlyn L;
Talele, Surabhi;
Kitange, Gaspar J;
Tian, Shulan;
Burgenske, Danielle M;
Mladek, Ann C;
Gupta, Shiv K;
Decker, Paul A;
McMinn, Madison H;
Stopka, Sylwia A;
Regan, Michael S;
He, Lihong;
Carlson, Brett L;
Bakken, Katrina

Publication type:

Article

TMOD-18. THE PATIENT DERIVED XENOGRAFT NATIONAL RESOURCE: A COMPREHENSIVE COLLECTION OF HIGH-GRADE GLIOMA MODELS FOR PRE-CLINICAL AND TRANSLATIONAL STUDIES.

Published in:

Neuro-Oncology, 2018, v. 20, p. vi272, doi. 10.1093/neuonc/noy148.1130

By:

Vaubel, Rachael;
Tian, Shulan;
Remonde, Dioval;
Schroeder, Mark;
Kollmeyer, Thomas;
Peng, Sen;
Mladek, Ann;
Carlson, Brett;
Ma, Daniel;
Kitange, Gaspar

Publication type:

Article

GENE-29. DLL3 AND ETV1 ARE INACTIVATED/METHYLATED IN CIC WILD-TYPE, IDH-MUTATED, 1p/19q-CODELETED GLIOMA.

Published in:

Neuro-Oncology, 2018, v. 20, p. vi109, doi. 10.1093/neuonc/noy148.455

By:

Kosel, Matthew;
Lachance, Daniel;
Decker, Paul;
Kollmeyer, Thomas;
Caron, Alissa;
Drucker, Kristen;
Sarkar, Gobinda;
Knight, Andrew;
Halder, Chandralekha;
Tian, Shulan

Publication type:

Article

Identification of factors associated with duplicate rate in ChIP-seq data.

Published in:

PLoS ONE, 2019, v. 14, n. 4, p. 1, doi. 10.1371/journal.pone.0214723

By:

Tian, Shulan;
Peng, Shuxia;
Kalmbach, Michael;
Gaonkar, Krutika S.;
Bhagwate, Aditya;
Ding, Wei;
Eckel-Passow, Jeanette;
Yan, Huihuang;
Slager, Susan L.

Publication type:

Article

Genome-Wide Epigenetic Studies in Human Disease: A Primer on -Omic Technologies.

Published in:

American Journal of Epidemiology, 2016, v. 183, n. 2, p. 96, doi. 10.1093/aje/kwv187

By:

Huihuang Yan;
Tian, Shulan;
Slager, Susan L.;
Zhifu Sun;
Ordog, Tamas

Publication type:

Article

Proteomic and phosphoproteomic comparison of human ES and iPS cells.

Published in:

Nature Methods, 2011, v. 8, n. 10, p. 821, doi. 10.1038/nmeth.1699

By:

Phanstiel, Douglas H;
Brumbaugh, Justin;
Wenger, Craig D;
Tian, Shulan;
Probasco, Mitchell D;
Bailey, Derek J;
Swaney, Danielle L;
Tervo, Mark A;
Bolin, Jennifer M;
Ruotti, Victor;
Stewart, Ron;
Thomson, James A;
Coon, Joshua J

Publication type:

Article

EBSeq-HMM: a Bayesian approach for identifying gene-expression changes in ordered RNA-seq experiments.

Published in:

2015

By:

Ning Leng;
Yuan Li;
McIntosh, Brian E.;
Bao Kim Nguyen;
Duffin, Bret;
Tian, Shulan;
Thomson, James A.;
Dewey, Colin N.;
Stewart, Ron;
Kendziorski, Christina

Publication type:

Product Review

Pathogenic Germ Line Variants in a Patient With Severe Toxicity From Breast Radiotherapy.

Published in:

2019

By:

Wilhite, Tyler J;
Youland, Ryan S;
Tian, Shulan;
Finley, Randi R;
Sarkaria, Jann N;
Corbin, Kimberly S

Publication type:

journal article

PARP Inhibitors for Sensitization of Alkylation Chemotherapy in Glioblastoma: Impact of Blood-Brain Barrier and Molecular Heterogeneity.

Published in:

Frontiers in Oncology, 2019, p. N.PAG, doi. 10.3389/fonc.2018.00670

By:

Gupta, Shiv K.;
Smith, Emily J.;
Mladek, Ann C.;
Tian, Shulan;
Decker, Paul A.;
Kizilbash, Sani H.;
Kitange, Gaspar J.;
Sarkaria, Jann N.

Publication type:

Article

Extensive transcriptomic study emphasizes importance of vesicular transport in C9orf72 expansion carriers.

Published in:

Acta Neuropathologica Communications, 2019, v. 7, n. 1, p. N.PAG, doi. 10.1186/s40478-019-0797-0

By:

Dickson, Dennis W.;
Baker, Matthew C.;
Jackson, Jazmyne L.;
DeJesus-Hernandez, Mariely;
Finch, NiCole A.;
Tian, Shulan;
Heckman, Michael G.;
Pottier, Cyril;
Gendron, Tania F.;
Murray, Melissa E.;
Ren, Yingxue;
Reddy, Joseph S.;
Graff-Radford, Neill R.;
Boeve, Bradley F.;
Petersen, Ronald C.;
Knopman, David S.;
Josephs, Keith A.;
Petrucelli, Leonard;
Oskarsson, Björn;
Sheppard, John W.

Publication type:

Article

Conserved Transcriptional Regulatory Programs Underlying Rice and Barley Germination.

Published in:

PLoS ONE, 2014, v. 9, n. 2, p. 1, doi. 10.1371/journal.pone.0087261

By:

Lin, Li;
Tian, Shulan;
Kaeppler, Shawn;
Liu, Zongrang;
An, Yong-Qiang (Charles)

Publication type:

Article

An analytical workflow for accurate variant discovery in highly divergent regions.

Published in:

BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-016-3045-z

By:

Shulan Tian;
Huihuang Yan;
Neuhauser, Claudia;
Slager, Susan L.

Publication type:

Article

Impact of post-alignment processing in variant discovery from whole exome data.

Published in:

BMC Bioinformatics, 2016, v. 17, p. 1, doi. 10.1186/s12859-016-1279-z

By:

Shulan Tian;
Huihuang Yan;
Kalmbach, Michael;
Slager, Susan L.

Publication type:

Article

Editorial: Clinical Genome Sequencing: Bioinformatics Challenges and Key Considerations.

Published in:

2022

By:

Tian, Shulan;
Tu, Zheng Jin;
Yan, Huihuang;
Klee, Eric W.

Publication type:

Editorial

Shared brain transcriptomic signature in TDP-43 type A FTLD patients with or without GRN mutations.

Published in:

2022

By:

Pottier, Cyril;
Mateiu, Ligia;
Baker, Matthew C;
DeJesus-Hernandez, Mariely;
Vicente, Cristina Teixeira;
Finch, NiCole A;
Tian, Shulan;
Blitterswijk, Marka van;
Murray, Melissa E;
Ren, Yingxue;
Petrucelli, Leonard;
Oskarsson, Björn;
Biernacka, Joanna M;
Graff-Radford, Neill R;
Boeve, Bradley F;
Petersen, Ronald C;
Josephs, Keith A;
Asmann, Yan W;
Dickson, Dennis W;
Rademakers, Rosa

Publication type:

journal article

Protein Kinase C Mediated Extraembryonic Endoderm Differentiation of Human Embryonic Stem Cells.

Published in:

Stem Cells, 2012, v. 30, n. 3, p. 461, doi. 10.1002/stem.1018

By:

Feng, Xuezhu;
Zhang, Jiuchun;
Smuga-Otto, Kimberly;
Tian, Shulan;
Yu, Junying;
Stewart, Ron;
Thomson, James A.

Publication type:

Article

Optic Vesicle-like Structures Derived from Human Pluripotent Stem Cells Facilitate a Customized Approach to Retinal Disease Treatment.

Published in:

Stem Cells, 2011, v. 29, n. 8, p. 1206, doi. 10.1002/stem.674

By:

Meyer, Jason S.;
Howden, Sara E.;
Wallace, Kyle A.;
Verhoeven, Amelia D.;
Wright, Lynda S.;
Capowski, Elizabeth E.;
Pinilla, Isabel;
Martin, Jessica M.;
Tian, Shulan;
Stewart, Ron;
Pattnaik, Bikash;
Thomson, James A.;
Gamm, David M.

Publication type:

Article

Comparative analysis of de novo assemblers for variation discovery in personal genomes.

Published in:

Briefings in Bioinformatics, 2018, v. 19, n. 5, p. 893, doi. 10.1093/bib/bbx037

By:

Tian, Shulan;
Yan, Huihuang;
Klee, Eric W;
Kalmbach, Michael;
Slager, Susan L

Publication type:

Article

Comprehensive Platelet Phenotypic Laboratory Testing and Bleeding History Scoring for Diagnosis of Suspected Hereditary Platelet Disorders: A Single-Institution Experience.

Published in:

American Journal of Clinical Pathology, 2017, v. 148, n. 1, p. 23, doi. 10.1093/AJCP/AQX038

By:

Perez Botero, Juliana;
Warad, Deepti M.;
He, Rong;
Uhl, Cindy B.;
Shulan Tian;
Otteson, Gregory E.;
Barness, Ryan L.;
Olson, Mary C.;
Gossman, Susan C.;
Charlesworth, Jon E.;
Nichols, William L.;
Pruthi, Rajiv K.;
Dong Chen

Publication type:

Article

Comprehensive Platelet Phenotypic Laboratory Testing and Bleeding History Scoring for Diagnosis of Suspected Hereditary Platelet Disorders: A Single-Institution Experience.

Published in:

2017

By:

Perez Botero, Juliana;
Warad, Deepti M;
He, Rong;
Uhl, Cindy B;
Tian, Shulan;
Otteson, Gregory E;
Barness, Ryan L;
Olson, Mary C;
Gossman, Susan C;
Charlesworth, Jon E;
Nichols, William L;
Pruthi, Rajiv K;
Chen, Dong

Publication type:

journal article