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Microbiome Resilience and Health Implications for People in Half-Year Travel.
- Published in:
- Frontiers in Immunology, 2022, v. 13, p. 1, doi. 10.3389/fimmu.2022.848994
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- Publication type:
- Article
Deciphering complex breakage-fusion-bridge genome rearrangements with Ambigram.
- Published in:
- Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-41259-w
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- Publication type:
- Article
Structural neighboring property for identifying protein-protein binding sites.
- Published in:
- BMC Systems Biology, 2015, v. 9, p. 1, doi. 10.1186/1752-0509-9-S5-S3
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- Publication type:
- Article
Spectral probabilities of top-down tandem mass spectra.
- Published in:
- BMC Genomics, 2014, v. 15, p. 1, doi. 10.1186/1471-2164-15-S1-S9
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- Publication type:
- Article
Corrigendum: Biomarkers and computational models for predicting efficacy to tumor ICI immunotherapy.
- Published in:
- Frontiers in Immunology, 2024, p. 1, doi. 10.3389/fimmu.2024.1438587
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- Publication type:
- Article
Biomarkers and computational models for predicting efficacy to tumor ICI immunotherapy.
- Published in:
- Frontiers in Immunology, 2024, p. 1, doi. 10.3389/fimmu.2024.1368749
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- Publication type:
- Article
Enhancing insights into diseases through horizontal gene transfer event detection from gut microbiome.
- Published in:
- Nucleic Acids Research, 2024, v. 52, n. 14, p. e61, doi. 10.1093/nar/gkae515
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- Publication type:
- Article
PhageScope: a well-annotated bacteriophage database with automatic analyses and visualizations.
- Published in:
- Nucleic Acids Research, 2024, v. 52, n. D1, p. D756, doi. 10.1093/nar/gkad979
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- Publication type:
- Article
Probabilistic tensor decomposition extracts better latent embeddings from single-cell multiomic data.
- Published in:
- Nucleic Acids Research, 2023, v. 51, n. 15, p. e81, doi. 10.1093/nar/gkad570
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- Publication type:
- Article
Incorporating cell hierarchy to decipher the functional diversity of single cells.
- Published in:
- Nucleic Acids Research, 2023, v. 51, n. 2, p. e9, doi. 10.1093/nar/gkac1044
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- Publication type:
- Article
SuperTAD: robust detection of hierarchical topologically associated domains with optimized structural information.
- Published in:
- Genome Biology, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s13059-020-02234-6
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- Publication type:
- Article
Protein-protein binding site identification by enumerating the configurations.
- Published in:
- BMC Bioinformatics, 2012, v. 13, n. 1, p. 158, doi. 10.1186/1471-2105-13-158
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- Publication type:
- Article
Incorporating Ab Initio energy into threading approaches for protein structure prediction.
- Published in:
- BMC Bioinformatics, 2011, v. 12, n. Suppl 1, p. 1, doi. 10.1186/1471-2105-12-S1-S54
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- Publication type:
- Article
Calibur: a tool for clustering large numbers ofprotein decoys.
- Published in:
- BMC Bioinformatics, 2010, v. 11, p. 25, doi. 10.1186/1471-2105-11-25
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- Publication type:
- Article
Periodontal and Peri-Implant Microbiome Dysbiosis Is Associated With Alterations in the Microbial Community Structure and Local Stability.
- Published in:
- Frontiers in Microbiology, 2022, v. 13, p. 1, doi. 10.3389/fmicb.2021.785191
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- Publication type:
- Article
DNA Methylation Markers for Pan-Cancer Prediction by Deep Learning.
- Published in:
- Genes, 2019, v. 10, n. 10, p. 778, doi. 10.3390/genes10100778
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- Publication type:
- Article
Genome-Wide Investigation and Functional Analysis of Sus scrofa RNA Editing Sites across Eleven Tissues.
- Published in:
- 2019
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- Publication type:
- Correction Notice
Genome-Wide Investigation and Functional Analysis of Sus scrofa RNA Editing Sites across Eleven Tissues.
- Published in:
- Genes, 2019, v. 10, n. 5, p. 327, doi. 10.3390/genes10050327
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- Publication type:
- Article
Fragment-HMM: A new approach to protein structure prediction.
- Published in:
- Protein Science: A Publication of the Protein Society, 2008, v. 17, n. 11, p. 1925, doi. 10.1110/ps.036442.108
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- Publication type:
- Article
Reconstructing directed gene regulatory network by only gene expression data.
- Published in:
- BMC Genomics, 2016, v. 17, p. 341, doi. 10.1186/s12864-016-2791-2
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- Publication type:
- Article
ERROR TOLERANT NMR BACKBONE RESONANCE ASSIGNMENT AND AUTOMATED STRUCTURE GENERATION.
- Published in:
- Journal of Bioinformatics & Computational Biology, 2011, v. 9, n. 1, p. 15, doi. 10.1142/S0219720011005276
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- Publication type:
- Article
PROTEIN SECONDARY STRUCTURE PREDICTION USING NMR CHEMICAL SHIFT DATA.
- Published in:
- Journal of Bioinformatics & Computational Biology, 2010, v. 8, n. 5, p. 867, doi. 10.1142/S0219720010004987
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- Publication type:
- Article
PREDICTING LOCAL QUALITY OF A SEQUENCE–STRUCTURE ALIGNMENT.
- Published in:
- Journal of Bioinformatics & Computational Biology, 2009, v. 7, n. 5, p. 789, doi. 10.1142/S0219720009004345
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- Publication type:
- Article
Elevated incidence of somatic mutations at prevalent genetic sites.
- Published in:
- Briefings in Bioinformatics, 2024, v. 25, n. 2, p. 1, doi. 10.1093/bib/bbae065
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- Publication type:
- Article
Quantitative annotations of T-Cell repertoire specificity.
- Published in:
- Briefings in Bioinformatics, 2023, v. 24, n. 3, p. 1, doi. 10.1093/bib/bbad175
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- Publication type:
- Article
TEINet: a deep learning framework for prediction of TCR–epitope binding specificity.
- Published in:
- Briefings in Bioinformatics, 2023, v. 24, n. 2, p. 1, doi. 10.1093/bib/bbad086
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- Publication type:
- Article
IMperm: a fast and comprehensive IMmune Paired-End Reads Merger for sequencing data.
- Published in:
- Briefings in Bioinformatics, 2023, v. 24, n. 2, p. 1, doi. 10.1093/bib/bbad080
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- Publication type:
- Article
Deep autoregressive generative models capture the intrinsics embedded in T-cell receptor repertoires.
- Published in:
- Briefings in Bioinformatics, 2023, v. 24, n. 2, p. 1, doi. 10.1093/bib/bbad038
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- Publication type:
- Article
SMURF: embedding single-cell RNA-seq data with matrix factorization preserving self-consistency.
- Published in:
- Briefings in Bioinformatics, 2023, v. 24, n. 2, p. 1, doi. 10.1093/bib/bbad026
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- Publication type:
- Article
Resolving single-cell copy number profiling for large datasets.
- Published in:
- Briefings in Bioinformatics, 2022, v. 23, n. 4, p. 1, doi. 10.1093/bib/bbac264
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- Publication type:
- Article
Somatic variant analysis suite: copy number variation clonal visualization online platform for large-scale single-cell genomics.
- Published in:
- Briefings in Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1093/bib/bbab452
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- Publication type:
- Article
Deep learning model reveals potential risk genes for ADHD, especially Ephrin receptor gene EPHA5.
- Published in:
- Briefings in Bioinformatics, 2021, v. 22, n. 6, p. 1, doi. 10.1093/bib/bbab207
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- Publication type:
- Article
Heterogeneity in lung cancers by single‐cell DNA sequencing.
- Published in:
- Clinical & Translational Medicine, 2023, v. 13, n. 9, p. 1, doi. 10.1002/ctm2.1388
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- Publication type:
- Article
Altered nitric oxide induced by gutmicrobiota reveals the connection between central precocious puberty and obesity.
- Published in:
- Clinical & Translational Medicine, 2021, v. 11, n. 2, p. 1, doi. 10.1002/ctm2.299
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- Publication type:
- Article
Editorial: Computational Methods in Inferring Cancer Tissue-of-Origin and Cancer Molecular Classification.
- Published in:
- 2021
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- Publication type:
- Editorial
Deep learning for HGT insertion sites recognition.
- Published in:
- BMC Genomics, 2020, v. 21, p. 1, doi. 10.1186/s12864-020-07296-1
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- Publication type:
- Article
I-Impute: a self-consistent method to impute single cell RNA sequencing data.
- Published in:
- BMC Genomics, 2020, v. 21, p. N.PAG, doi. 10.1186/s12864-020-07007-w
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- Publication type:
- Article
Coding genomes with gapped pattern graph convolutional network.
- Published in:
- Bioinformatics, 2024, v. 40, n. 4, p. 1, doi. 10.1093/bioinformatics/btae188
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- Publication type:
- Article
A comprehensive investigation of metagenome assembly by linked-read sequencing.
- Published in:
- Microbiome, 2020, v. 8, n. 1, p. N.PAG, doi. 10.1186/s40168-020-00929-3
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- Publication type:
- Article
Metabolic profiles outperform the microbiota in assessing the response of vaginal microenvironments to the changed state of HPV infection.
- Published in:
- NPJ Biofilms & Microbiomes, 2024, v. 10, n. 1, p. 1, doi. 10.1038/s41522-024-00500-0
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- Article
Insights into the transmission of respiratory infectious diseases through empirical human contact networks.
- Published in:
- Scientific Reports, 2016, p. 31484, doi. 10.1038/srep31484
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- Publication type:
- Article
SPROUT: spectral sparsification helps restore the spatial structure at single-cell resolution.
- Published in:
- NAR Genomics & Bioinformatics, 2022, v. 4, n. 3, p. 1, doi. 10.1093/nargab/lqac069
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- Publication type:
- Article
Detecting TAD-like domains from RNA-associated interactions.
- Published in:
- Nucleic Acids Research, 2022, v. 50, n. 15, p. e88, doi. 10.1093/nar/gkac422
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- Publication type:
- Article
SpecHap: a diploid phasing algorithm based on spectral graph theory.
- Published in:
- Nucleic Acids Research, 2021, v. 49, n. 19, p. e114, doi. 10.1093/nar/gkab709
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- Publication type:
- Article
Oviz-Bio: a web-based platform for interactive cancer genomics data visualization.
- Published in:
- Nucleic Acids Research, 2020, v. 48, n. 14, p. 8203, doi. 10.1093/nar/gkaa553
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- Publication type:
- Article
Oviz-Bio: a web-based platform for interactive cancer genomics data visualization.
- Published in:
- Nucleic Acids Research, 2020, v. 48, n. W1, p. W415, doi. 10.1093/nar/gkaa371
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- Publication type:
- Article
Improving protein fold recognition by extracting fold-specific features from predicted residue-residue contacts.
- Published in:
- Bioinformatics, 2017, v. 33, n. 23, p. 3749, doi. 10.1093/bioinformatics/btx514
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- Publication type:
- Article
FALCON@home: a high-throughput protein structure prediction server based on remote homologue recognition.
- Published in:
- 2016
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- Publication type:
- Product Review
Fingerprinting protein structures effectively and efficiently.
- Published in:
- Bioinformatics, 2014, v. 30, n. 7, p. 949, doi. 10.1093/bioinformatics/btt659
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- Publication type:
- Article
Designing succinct structural alphabets.
- Published in:
- Bioinformatics, 2008, v. 24, n. 13, p. i182
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- Publication type:
- Article