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Impact of short-read sequencing on the misassembly of a plant genome.
- Published in:
- BMC Genomics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12864-021-07397-5
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- Article
Improved recovery of cell-cycle gene expression in Saccharomyces cerevisiae from regulatory interactions in multiple omics data.
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- BMC Genomics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12864-020-6554-8
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- Article
Expression and regulatory asymmetry of retained Arabidopsis thaliana transcription factor genes derived from whole genome duplication.
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- BMC Evolutionary Biology, 2019, v. 19, n. 1, p. N.PAG, doi. 10.1186/s12862-019-1398-z
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- Article
The causes and molecular consequences of polyploidy in flowering plants.
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- Annals of the New York Academy of Sciences, 2014, v. 1320, n. 1, p. 16, doi. 10.1111/nyas.12466
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- Article
Transcriptional coordination of physiological responses in Nannochloropsis oceanica CCMP1779 under light/dark cycles.
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- Plant Journal, 2015, v. 83, n. 6, p. 1097, doi. 10.1111/tpj.12944
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- Article
Comparative transcriptomics of three Poaceae species reveals patterns of gene expression evolution.
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- Plant Journal, 2012, v. 71, n. 3, p. 492, doi. 10.1111/j.1365-313X.2012.05005.x
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- Article
Alternative Splicing of a Multi-Drug Transporter from Pseudoperonospora cubensis Generates an RXLR Effector Protein That Elicits a Rapid Cell Death.
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- PLoS ONE, 2012, v. 7, n. 4, p. 1, doi. 10.1371/journal.pone.0034701
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- Article
Overcoming the Challenges to Enhancing Experimental Plant Biology With Computational Modeling.
- Published in:
- Frontiers in Plant Science, 2021, v. 12, p. 1, doi. 10.3389/fpls.2021.687652
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- Article
Assessing the evolution of research topics in a biological field using plant science as an example.
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- PLoS Biology, 2024, v. 22, n. 5, p. 1, doi. 10.1371/journal.pbio.3002612
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- Article
Predictive Models of Genetic Redundancy in Arabidopsis thaliana.
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- Molecular Biology & Evolution, 2021, v. 38, n. 8, p. 3397, doi. 10.1093/molbev/msab111
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- Article
A Model-Based Approach for Identifying Functional Intergenic Transcribed Regions and Noncoding RNAs.
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- Molecular Biology & Evolution, 2018, v. 35, n. 6, p. 1422, doi. 10.1093/molbev/msy035
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- Article
Modeling temporal and hormonal regulation of plant transcriptional response to wounding.
- Published in:
- Plant Cell, 2022, v. 34, n. 2, p. 867, doi. 10.1093/plcell/koab287
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- Article
Contrasting transcriptional responses to Fusarium virguliforme colonization in symptomatic and asymptomatic hosts.
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- Plant Cell, 2021, v. 33, n. 2, p. 224, doi. 10.1093/plcell/koaa021
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- Article
Regulatory Divergence in Wound-Responsive Gene Expression between Domesticated and Wild Tomato.
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- Plant Cell, 2018, v. 30, n. 7, p. 1445, doi. 10.1105/tpc.18.00194
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- Article
Characteristics of Plant Essential Genes Allow for within- and between-Species Prediction of Lethal Mutant Phenotypes.
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- Plant Cell, 2015, v. 27, n. 8, p. 2133, doi. 10.1105/tpc.15.00051
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- Article
Consequences of Whole-Genome Triplication as Revealed by Comparative Genomic Analyses of the Wild Radish Raphanus raphanistrum and Three Other Brassicaceae Species.
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- Plant Cell, 2014, v. 26, n. 5, p. 1925, doi. 10.1105/tpc.114.124297
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- Article
Evolutionary characteristics of intergenic transcribed regions indicate rare novel genes and widespread noisy transcription in the Poaceae.
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- Scientific Reports, 2019, v. 9, n. 1, p. N.PAG, doi. 10.1038/s41598-019-47797-y
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- Article
Contribution of Sequence Motif, Chromatin State, and DNA Structure Features to Predictive Models of Transcription Factor Binding in Yeast.
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- PLoS Computational Biology, 2015, v. 11, n. 8, p. 1, doi. 10.1371/journal.pcbi.1004418
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- Article
A RARE CASE OF PLASTID PROTEIN-CODING GENE DUPLICATION IN THE CHLOROPLAST GENOME OF EUGLENA ARCHAEOPLASTIDIATA (EUGLENOPHYTA).
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- Journal of Phycology, 2017, v. 53, n. 3, p. 493, doi. 10.1111/jpy.12531
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- Article
Factors Influencing Gene Family Size Variation Among Related Species in a Plant Family, Solanaceae.
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- Genome Biology & Evolution, 2018, v. 10, n. 10, p. 2596, doi. 10.1093/gbe/evy193
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- Article
Genomic Transition to Pathogenicity in Chytrid Fungi.
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- PLoS Pathogens, 2011, v. 7, n. 11, p. 1, doi. 10.1371/journal.ppat.1002338
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- Article
The Nonsynonymous/Synonymous Substitution Rate Ratio versus the Radical/Conservative Replacement Rate Ratio in the Evolution of Mammalian Genes.
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- Molecular Biology & Evolution, 2007, v. 24, n. 10, p. 2235, doi. 10.1093/molbev/msm152
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- Article
Plant Science Knowledge Graph Corpus: a gold standard entity and relation corpus for the molecular plant sciences.
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- In Silico Plants, 2024, v. 6, n. 1, p. 1, doi. 10.1093/insilicoplants/diad021
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- Article
High‐throughput measurement of plant fitness traits with an object detection method using Faster R‐CNN.
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- New Phytologist, 2022, v. 234, n. 4, p. 1521, doi. 10.1111/nph.18056
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- Article
Optimising the use of gene expression data to predict plant metabolic pathway memberships.
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- New Phytologist, 2021, v. 231, n. 1, p. 475, doi. 10.1111/nph.17355
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- Article
Challenges and opportunities to build quantitative self-confidence in biologists.
- Published in:
- BioScience, 2023, v. 73, n. 5, p. 364, doi. 10.1093/biosci/biad015
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- Article
Utility and Limitations of Using Gene Expression Data to Identify Functional Associations.
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- PLoS Computational Biology, 2016, v. 12, n. 12, p. 1, doi. 10.1371/journal.pcbi.1005244
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- Article