Works by Shirley, Neil J.

Results: 35

The cellulose synthase‐like F3 (CslF3) gene mediates cell wall polysaccharide synthesis and affects root growth and differentiation in barley.

Published in:

Plant Journal, 2022, v. 110, n. 6, p. 1681, doi. 10.1111/tpj.15764

By:

Lou, Haoyu;
Tucker, Matthew R.;
Shirley, Neil J.;
Lahnstein, Jelle;
Yang, Xiujuan;
Ma, Chao;
Schwerdt, Julian;
Fusi, Riccardo;
Burton, Rachel A.;
Band, Leah R.;
Bennett, Malcolm J.;
Bulone, Vincent

Publication type:

Article

HvLEAFY controls the early stages of floral organ specification and inhibits the formation of multiple ovaries in barley.

Published in:

Plant Journal, 2021, v. 108, n. 2, p. 509, doi. 10.1111/tpj.15457

By:

Selva, Caterina;
Shirley, Neil J.;
Houston, Kelly;
Whitford, Ryan;
Baumann, Ute;
Li, Gang;
Tucker, Matthew R.

Publication type:

Article

Germline β−1,3-glucan deposits are required for female gametogenesis in Arabidopsis thaliana.

Published in:

Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-50143-0

By:

Pinto, Sara C.;
Leong, Weng Herng;
Tan, Hweiting;
McKee, Lauren;
Prevost, Amelie;
Ma, Chao;
Shirley, Neil. J.;
Petrella, Rosanna;
Yang, Xiujuan;
Koltunow, Anna M.;
Bulone, Vincent;
Kanaoka, Masahiro M.;
Higashyiama, Tetsuya;
Coimbra, Sílvia;
Tucker, Matthew R.

Publication type:

Article

Grain development in Brachypodium and other grasses: possible interactions between cell expansion, starch deposition, and cell-wall synthesis.

Published in:

Journal of Experimental Botany, 2013, v. 64, n. 16, p. 5033, doi. 10.1093/jxb/ert292

By:

Trafford, Kay;
Haleux, Pauline;
Henderson, Marilyn;
Parker, Mary;
Shirley, Neil J.;
Tucker, Matthew R.;
Fincher, Geoffrey B.;
Burton, Rachel A.

Publication type:

Article

Ovule cell wall composition is a maternal determinant of grain size in barley.

Published in:

New Phytologist, 2023, v. 237, n. 6, p. 2136, doi. 10.1111/nph.18714

By:

Yang, Xiujuan;
Wilkinson, Laura G.;
Aubert, Matthew K.;
Houston, Kelly;
Shirley, Neil J.;
Tucker, Matthew R.

Publication type:

Article

Down-regulation of the glucan synthase-like 6 gene ( HvGsl6) in barley leads to decreased callose accumulation and increased cell wall penetration by Blumeria graminis f. sp. hordei.

Published in:

New Phytologist, 2016, v. 212, n. 2, p. 434, doi. 10.1111/nph.14086

By:

Chowdhury, Jamil;
Schober, Michael S.;
Shirley, Neil J.;
Singh, Rohan R.;
Jacobs, Andrew K.;
Douchkov, Dimitar;
Schweizer, Patrick;
Fincher, Geoffrey B.;
Burton, Rachel A.;
Little, Alan

Publication type:

Article

A chromosome-level genome assembly of Plantago ovata.

Published in:

Scientific Reports, 2023, v. 13, n. 1, p. 1, doi. 10.1038/s41598-022-25078-5

By:

Herliana, Lina;
Schwerdt, Julian G.;
Neumann, Tycho R.;
Severn-Ellis, Anita;
Phan, Jana L.;
Cowley, James M.;
Shirley, Neil J.;
Tucker, Matthew R.;
Bianco-Miotto, Tina;
Batley, Jacqueline;
Watson-Haigh, Nathan S.;
Burton, Rachel A.

Publication type:

Article

A chromosome-level genome assembly of Plantago ovata.

Published in:

Scientific Reports, 2023, v. 13, n. 1, p. 1, doi. 10.1038/s41598-022-25078-5

By:

Herliana, Lina;
Schwerdt, Julian G.;
Neumann, Tycho R.;
Severn-Ellis, Anita;
Phan, Jana L.;
Cowley, James M.;
Shirley, Neil J.;
Tucker, Matthew R.;
Bianco-Miotto, Tina;
Batley, Jacqueline;
Watson-Haigh, Nathan S.;
Burton, Rachel A.

Publication type:

Article

HvSL1 and HvMADS16 promote stamen identity to restrict multiple ovary formation in barley.

Published in:

Journal of Experimental Botany, 2023, v. 74, n. 17, p. 5039, doi. 10.1093/jxb/erad218

By:

Selva, Caterina;
Yang, Xiujuan;
Shirley, Neil J;
Whitford, Ryan;
Baumann, Ute;
Tucker, Matthew R

Publication type:

Article

Overexpression of HvCslF6 in barley grain alters carbohydrate partitioning plus transfer tissue and endosperm development.

Published in:

Journal of Experimental Botany, 2020, v. 71, n. 1, p. 138, doi. 10.1093/jxb/erz407

By:

Lim, Wai Li;
Collins, Helen M;
Byrt, Caitlin S;
Lahnstein, Jelle;
Shirley, Neil J;
Aubert, Matthew K;
Tucker, Matthew R;
Peukert, Manuela;
Matros, Andrea;
Burton, Rachel A

Publication type:

Article

Prospecting for Energy-Rich Renewable Raw Materials: Sorghum Stem Case Study.

Published in:

2016

By:

Byrt, Caitlin S.;
Betts, Natalie S.;
Tan, Hwei-Ting;
Lim, Wai Li;
Ermawar, Riksfardini A.;
Nguyen, Hai Yen;
Shirley, Neil J.;
Lahnstein, Jelle;
Corbin, Kendall;
Fincher, Geoffrey B.;
Knauf, Vic;
Burton, Rachel A.

Publication type:

Case Study

Transcript Profiling of MIKCc MADS-Box Genes Reveals Conserved and Novel Roles in Barley Inflorescence Development.

Published in:

Frontiers in Plant Science, 2021, v. 12, p. 1, doi. 10.3389/fpls.2021.705286

By:

Kuijer, Hendrik N. J.;
Shirley, Neil J.;
Khor, Shi F.;
Shi, Jin;
Schwerdt, Julian;
Zhang, Dabing;
Li, Gang;
Burton, Rachel A.

Publication type:

Article

Genetics and physiology of cell wall polysaccharides in the model C4 grass, Setaria viridis spp.

Published in:

BMC Plant Biology, 2015, v. 15, n. 1, p. 1, doi. 10.1186/s12870-015-0624-0

By:

Ermawar, Riksfardini A.;
Collins, Helen M.;
Byrt, Caitlin S.;
Henderson, Marilyn;
O'Donovan, Lisa A.;
Shirley, Neil J.;
Schwerdt, Julian G.;
Lahnstein, Jelle;
Fincher, Geoffrey B.;
Burton, Rachel A.

Publication type:

Article

Powerful regulatory systems and posttranscriptional gene silencing resist increases in cellulose content in cell walls of barley.

Published in:

BMC Plant Biology, 2015, v. 15, n. 1, p. 1, doi. 10.1186/s12870-015-0448-y

By:

Hwei-Ting Tan;
Shirley, Neil J.;
Singh, Rohan R.;
Henderson, Marilyn;
Dhugga, Kanwarpal S.;
Mayo, Gwenda M.;
Fincher, Geoffrey B.;
Burton, Rachel A.

Publication type:

Article

Spatial gradients in cell wall composition and transcriptional profiles along elongating maize internodes.

Published in:

BMC Plant Biology, 2014, v. 14, n. 1, p. 1, doi. 10.1186/1471-2229-14-27

By:

Qisen Zhang;
Cheetamun, Roshan;
Dhugga, Kanwarpal S.;
Rafalski, J. Antoni;
Tingey, Scott V.;
Shirley, Neil J.;
Taylor, Jillian;
Hayes, Kevin;
Beatty, Mary;
Bacic, Antony;
Burton, Rachel A.;
Fincher, Geoffrey B.

Publication type:

Article

Endo-(1,4)-β-Glucanase gene families in the grasses: temporal and spatial Co-transcription of orthologous genes.

Published in:

BMC Plant Biology, 2012, v. 12, n. 1, p. 235, doi. 10.1186/1471-2229-12-235

By:

Buchanan, Margaret;
Burton, Rachel A.;
Dhugga, Kanwarpal S.;
Rafalski, Antoni J.;
Tingey, Scott V.;
Shirley, Neil J.;
Fincher, Geoffrey B.

Publication type:

Article

The dynamics of cereal cyst nematode infection differ between susceptible and resistant barley cultivars and lead to changes in (1,3;1,4)-β-glucan levels and HvCslF gene transcript abundance.

Published in:

New Phytologist, 2015, v. 207, n. 1, p. 135, doi. 10.1111/nph.13349

By:

Aditya, Jessika;
Lewis, John;
Shirley, Neil J.;
Tan, Hwei‐Ting;
Henderson, Marilyn;
Fincher, Geoffrey B.;
Burton, Rachel A.;
Mather, Diane E.;
Tucker, Matthew R.

Publication type:

Article

Exploring the Role of Cell Wall-Related Genes and Polysaccharides during Plant Development.

Published in:

Plants (2223-7747), 2018, v. 7, n. 2, p. 42, doi. 10.3390/plants7020042

By:

Tucker, Matthew R.;
Lou, Haoyu;
Aubert, Matthew K.;
Wilkinson, Laura G.;
Little, Alan;
Houston, Kelly;
Pinto, Sara C.;
Shirley, Neil J.

Publication type:

Article

Differences in hydrolytic enzyme activity accompany natural variation in mature aleurone morphology in barley (Hordeum vulgare L.).

Published in:

Scientific Reports, 2018, v. 8, n. 1, p. N.PAG, doi. 10.1038/s41598-018-29068-4

By:

Aubert, Matthew K.;
Coventry, Stewart;
Shirley, Neil J.;
Betts, Natalie S.;
Würschum, Tobias;
Burton, Rachel A.;
Tucker, Matthew R.

Publication type:

Article

Revised Phylogeny of the Cellulose Synthase Gene Superfamily: Insights into Cell Wall Evolution.

Published in:

Plant Physiology, 2018, v. 177, n. 3, p. 1124, doi. 10.1104/pp.17.01718

By:

Little, Alan;
Schwerdt, Julian G.;
Shirley, Neil J.;
Khor, Shi F.;
Neumann, Kylie;
O'Donovan, Lisa A.;
Lahnstein, Jelle;
Collins, Helen M.;
Henderson, Marilyn;
Fincher, Geoffrey B.;
Burton, Rachel A.

Publication type:

Article

Asexual Female Gametogenesis Involves Contact with a Sexually-Fated Megaspore in Apomictic Hieracium.

Published in:

Plant Physiology, 2018, v. 177, n. 3, p. 1027, doi. 10.1104/pp.18.00342

By:

Juranić, Martina;
Tucker, Matthew R.;
Schultz, Carolyn J.;
Shirley, Neil J.;
Taylor, Jennifer M.;
Spriggs, Andrew;
Johnson, Susan D.;
Bulone, Vincent;
Koltunow, Anna M.

Publication type:

Article

The Dynamics of Transcript Abundance during Cellularization of Developing Barley Endosperm.

Published in:

Plant Physiology, 2016, v. 170, n. 3, p. 1549, doi. 10.1104/pp.15.01690

By:

Runxuan Zhang;
Tucker, Matthew R.;
Burton, Rachel A.;
Shirley, Neil J.;
Little, Alan;
Morris, Jenny;
Milne, Linda;
Houston, Kelly;
Hedley, Pete E.;
Waugh, Robbie;
Fincher, Geoffrey B.

Publication type:

Article

Evolutionary Dynamics of the Cellulose Synthase Gene Superfamily in Grasses.

Published in:

Plant Physiology, 2015, v. 168, n. 3, p. 968, doi. 10.1104/pp.15.00140

By:

Schwerdt, Julian G.;
MacKenzie, Katrin;
Wright, Frank;
Oehme, Daniel;
Wagner, John M.;
Harvey, Andrew J.;
Shirley, Neil J.;
Burton, Rachel A.;
Schreiber, Miriam;
Halpin, Claire;
Zimmer, Jochen;
Marshall, David F.;
Waugh, Robbie;
Fincher, Geoffrey B.

Publication type:

Article

Cell Wall Modifications in Maize Pulvini in Response to Gravitational Stressllw1[W][OA].

Published in:

Plant Physiology, 2011, v. 156, n. 4, p. 2155, doi. 10.1104/pp.111.179606

By:

Zhang, Qisen;
Pettolino, Filomena A.;
Dhugga, Kanwarpal S.;
Rafalski, J. Antoni;
Tingey, Scott;
Taylor, Jillian;
Shirley, Neil J.;
Hayes, Kevin;
Beatty, Mary;
Abrams, Suzanne R.;
Zaharia, L. Irina;
Burton, Rachel A.;
Bacic, Antony;
Fincher, Geoffrey B.

Publication type:

Article

A Customized Gene Expression Microarray Reveals That the Brittle Stem Phenotype fs2 of Barley Is Attributable to a Retroelement in the HvCesA4 Cellulose Synthase Gene.

Published in:

Plant Physiology, 2010, v. 153, n. 4, p. 1716, doi. 10.1104/pp.110.158329

By:

Burton, Rachel A.;
Ma, Gang;
Baumann, Ute;
Harvey, Andrew J.;
Shirley, Neil J.;
Taylor, Jillian;
Pettolino, Filomena;
Bacic, Antony;
Beatty, Mary;
Simmons, Carl R.;
Dhugga, Kanwarpal S.;
Rafalski, J. Antoni;
Tingey, Scott V.;
Fincher, Geoffrey B.

Publication type:

Article

The Genetics, Transcriptional Profiles, and Catalytic Properties of UDP-α-D-Xylose 4-Epimerases from Barley.

Published in:

Plant Physiology, 2010, v. 153, n. 2, p. 555, doi. 10.1104/pp.110.157644

By:

Qisen Zhang;
Shirley, Neil J.;
Burton, Rachel A.;
Lahnstein, Jelle;
Hrmova, Maria;
Fincher, Geoffrey B.

Publication type:

Article

Combining transcriptional datasets using the generalized singular value decomposition.

Published in:

BMC Bioinformatics, 2008, v. 9, p. 1, doi. 10.1186/1471-2105-9-335

By:

Schreiber, Andreas W.;
Shirley, Neil J.;
Burton, Rachel A.;
Fincher, Geoffrey B.

Publication type:

Article

Over-expression of specific HvCslF cellulose synthase-like genes in transgenic barley increases the levels of cell wall (1,3;1,4)-β-.

Published in:

Plant Biotechnology Journal, 2011, v. 9, n. 2, p. 117, doi. 10.1111/j.1467-7652.2010.00532.x

By:

Burton, Rachel A.;
Collins, Helen M.;
Kibble, Natalie A. J.;
Smith, Jessica A.;
Shirley, Neil J.;
Jobling, Stephen A.;
Henderson, Marilyn;
Singh, Rohan R.;
Pettolino, Filomena;
Wilson, Sarah M.;
Bird, Anthony R.;
Topping, David L.;
Bacic, Antony;
Fincher, Geoffrey B.

Publication type:

Article

Translating auxin responses into ovules, seeds and yield: Insight from Arabidopsis and the cereals.

Published in:

Journal of Integrative Plant Biology, 2019, v. 61, n. 3, p. 310, doi. 10.1111/jipb.12747

By:

Shirley, Neil J.;
Aubert, Matthew K.;
Wilkinson, Laura G.;
Bird, Dayton C.;
Lora, Jorge;
Yang, Xiujuan;
Tucker, Matthew R.

Publication type:

Article

Distribution, structure and biosynthetic gene families of (1,3;1,4)-β-glucan in Sorghum bicolor.

Published in:

Journal of Integrative Plant Biology, 2015, v. 57, n. 4, p. 429, doi. 10.1111/jipb.12338

By:

Ermawar, Riksfardini A.;
Collins, Helen M.;
Byrt, Caitlin S.;
Betts, Natalie S.;
Henderson, Marilyn;
Shirley, Neil J.;
Schwerdt, Julian;
Lahnstein, Jelle;
Fincher, Geoffrey B.;
Burton, Rachel A.

Publication type:

Article

Differential expression of the HvCslF6 gene late in grain development may explain quantitative differences in (1,3;1,4)-β-glucan concentration in barley.

Published in:

Molecular Breeding, 2015, v. 35, n. 1, p. 1, doi. 10.1007/s11032-015-0208-6

By:

Wong, Sie Chuong;
Shirley, Neil J.;
Little, Alan;
Khoo, Kelvin H. P.;
Schwerdt, Julian;
Fincher, Geoffrey B.;
Burton, Rachel A.;
Mather, Diane E.

Publication type:

Article

13C Chemical shifts and 13C15N coupling constants of some 15N-labelled bridgehead nitro compounds.

Published in:

Heteroatom Chemistry, 1992, v. 3, n. 1, p. 33, doi. 10.1002/hc.520030107

By:

Della, Ernest W.;
Janowski, Wit K.;
Kasum, Bruno;
Kirkbride, K. Paul;
Shirley, Neil J.

Publication type:

Article

Morphology, Carbohydrate Distribution, Gene Expression, and Enzymatic Activities Related to Cell Wall Hydrolysis in Four Barley Varieties during Simulated Malting.

Published in:

Frontiers in Plant Science, 2017, p. 1, doi. 10.3389/fpls.2017.01872

By:

Betts, Natalie S.;
Wilkinson, Laura G.;
Khor, Shi F.;
Shirley, Neil J.;
Lok, Finn;
Skadhauge, Birgitte;
Burton, Rachel A.;
Fincher, Geoffrey B.;
Collins, Helen M.

Publication type:

Article

Altered Expression of Genes Implicated in Xylan Biosynthesis Affects Penetration Resistance against Powdery Mildew.

Published in:

Frontiers in Plant Science, 2017, v. 8, p. 1, doi. 10.3389/fpls.2017.00445

By:

Chowdhury, Jamil;
Stefanie Lück;
Rajaraman, Jeyaraman;
Douchkov, Dimitar;
Shirley, Neil J.;
Schwerdt, Julian G.;
Schweizer, Patrick;
Fincher, Geoffrey B.;
Burton, Rachel A.;
Little, Alan

Publication type:

Article

Dissecting the Genetic Basis for Seed Coat Mucilage Heteroxylan Biosynthesis in Plantago ovata Using Gamma Irradiation and Infrared Spectroscopy.

Published in:

Frontiers in Plant Science, 2017, v. 8, p. 1, doi. 10.3389/fpls.2017.00326

By:

Tucker, Matthew R.;
Chao Ma;
Jana Phan;
Neumann, Kylie;
Shirley, Neil J.;
Hahn, Michael G.;
Cozzolino, Daniel;
Burton, Rachel A.

Publication type:

Article

Works by Shirley, Neil J.

The cellulose synthase‐like F3 (CslF3) gene mediates cell wall polysaccharide synthesis and affects root growth and differentiation in barley.

HvLEAFY controls the early stages of floral organ specification and inhibits the formation of multiple ovaries in barley.

Germline β−1,3-glucan deposits are required for female gametogenesis in Arabidopsis thaliana.

Grain development in Brachypodium and other grasses: possible interactions between cell expansion, starch deposition, and cell-wall synthesis.

Ovule cell wall composition is a maternal determinant of grain size in barley.

Down-regulation of the glucan synthase-like 6 gene ( HvGsl6) in barley leads to decreased callose accumulation and increased cell wall penetration by Blumeria graminis f. sp. hordei.

A chromosome-level genome assembly of Plantago ovata.

A chromosome-level genome assembly of Plantago ovata.

HvSL1 and HvMADS16 promote stamen identity to restrict multiple ovary formation in barley.

Overexpression of HvCslF6 in barley grain alters carbohydrate partitioning plus transfer tissue and endosperm development.

Prospecting for Energy-Rich Renewable Raw Materials: Sorghum Stem Case Study.

Transcript Profiling of MIKCc MADS-Box Genes Reveals Conserved and Novel Roles in Barley Inflorescence Development.

Genetics and physiology of cell wall polysaccharides in the model C<sub>4</sub> grass, Setaria viridis spp.

Powerful regulatory systems and posttranscriptional gene silencing resist increases in cellulose content in cell walls of barley.

Spatial gradients in cell wall composition and transcriptional profiles along elongating maize internodes.

Endo-(1,4)-β-Glucanase gene families in the grasses: temporal and spatial Co-transcription of orthologous genes.

The dynamics of cereal cyst nematode infection differ between susceptible and resistant barley cultivars and lead to changes in (1,3;1,4)-β-glucan levels and HvCslF gene transcript abundance.

Exploring the Role of Cell Wall-Related Genes and Polysaccharides during Plant Development.

Differences in hydrolytic enzyme activity accompany natural variation in mature aleurone morphology in barley (Hordeum vulgare L.).

Revised Phylogeny of the Cellulose Synthase Gene Superfamily: Insights into Cell Wall Evolution.

Asexual Female Gametogenesis Involves Contact with a Sexually-Fated Megaspore in Apomictic Hieracium.

The Dynamics of Transcript Abundance during Cellularization of Developing Barley Endosperm.

Evolutionary Dynamics of the Cellulose Synthase Gene Superfamily in Grasses.

Cell Wall Modifications in Maize Pulvini in Response to Gravitational Stressllw<sup>1[W][OA]</sup>.

A Customized Gene Expression Microarray Reveals That the Brittle Stem Phenotype fs2 of Barley Is Attributable to a Retroelement in the HvCesA4 Cellulose Synthase Gene.

The Genetics, Transcriptional Profiles, and Catalytic Properties of UDP-α-D-Xylose 4-Epimerases from Barley.

Combining transcriptional datasets using the generalized singular value decomposition.

Over-expression of specific HvCslF cellulose synthase-like genes in transgenic barley increases the levels of cell wall (1,3;1,4)-β-.

Translating auxin responses into ovules, seeds and yield: Insight from Arabidopsis and the cereals.

Distribution, structure and biosynthetic gene families of (1,3;1,4)-β-glucan in Sorghum bicolor.

Differential expression of the HvCslF6 gene late in grain development may explain quantitative differences in (1,3;1,4)-β-glucan concentration in barley.

<sup>13</sup>C Chemical shifts and <sup>13</sup>C<sup>15</sup>N coupling constants of some <sup>15</sup>N-labelled bridgehead nitro compounds.

Morphology, Carbohydrate Distribution, Gene Expression, and Enzymatic Activities Related to Cell Wall Hydrolysis in Four Barley Varieties during Simulated Malting.

Altered Expression of Genes Implicated in Xylan Biosynthesis Affects Penetration Resistance against Powdery Mildew.

Dissecting the Genetic Basis for Seed Coat Mucilage Heteroxylan Biosynthesis in Plantago ovata Using Gamma Irradiation and Infrared Spectroscopy.