Works by Shimizu, Shigeomi

Results: 62

Preparation of connexin43-integrated giant Liposomes by a baculovirus expression-liposome fusion method.

Published in:

Biotechnology & Bioengineering, 2010, v. 107, n. 5, p. 836, doi. 10.1002/bit.22845

By:

Kamiya, Koki;
Tsumoto, Kanta;
Arakawa, Satoko;
Shimizu, Shigeomi;
Morita, Ikuo;
Yoshimura, Tetsuro;
Akiyoshi, Kazunari

Publication type:

Article

Presence of Gut Microbiota Worsens D‐Galactosamine and Lipopolysaccharide‐Induced Hepatic Injury in Mice.

Published in:

Genes to Cells, 2025, v. 30, n. 1, p. 1, doi. 10.1111/gtc.13183

By:

Ohshima, Kazuma;
Torii, Satoru;
Shimizu, Shigeomi

Publication type:

Article

Absence of ULK1 decreases AMPK activity in the kidney, leading to chronic kidney disease progression.

Published in:

Genes to Cells, 2023, v. 28, n. 1, p. 5, doi. 10.1111/gtc.12989

By:

Yanagi, Tomoki;
Kikuchi, Hiroaki;
Susa, Koichiro;
Takahashi, Naohiro;
Bamba, Hiroki;
Suzuki, Takefumi;
Nakano, Yuta;
Fujiki, Tamami;
Mori, Yutaro;
Ando, Fumiaki;
Mandai, Shintaro;
Mori, Takayasu;
Takeuchi, Koh;
Honda, Shinya;
Torii, Satoru;
Shimizu, Shigeomi;
Rai, Tatemitsu;
Uchida, Shinichi;
Sohara, Eisei

Publication type:

Article

Inhibition of apoptosis by the actin-regulatory protein gelsolin.

Published in:

EMBO Journal, 1997, v. 16, n. 15, p. 4650, doi. 10.1093/emboj/16.15.4650

By:

Ohtsu, Makoto;
Sakai, Norio;
Fujita, Hisakazu;
Kashiwagi, Motoi;
Gasa, Shinsei;
Shimizu, Shigeomi;
Eguchi, Yutaka;
Tsujimoto, Yoshihide;
Sakiyama, Yukio;
Kobayashi, Kunihiko;
Kuzumaki, Noboru

Publication type:

Article

Budd-Chiari Syndrome Combined With Antiphospholipid Syndrome: Case Report and Literature Review.

Published in:

Vascular Surgery, 1993, v. 27, n. 7, p. 501, doi. 10.1177/153857449302700703

By:

Shimizu, Shigeomi;
Miyata, Masahiko;
Kamiike, Wataru;
Ito, Toshinori;
Nakamuro, Makoto;
Nomura, Masaya;
Negoro, Shigeru;
Nakamura, Hitonobu;
Matsuda, Hikaru

Publication type:

Article

Autophagy involvement in oncogenesis.

Published in:

Cancer Science, 2020, v. 111, n. 11, p. 3993, doi. 10.1111/cas.14646

By:

Torii, Satoru;
Honda, Shinya;
Murohashi, Michiko;
Yamaguchi, Hirofumi;
Shimizu, Shigeomi

Publication type:

Article

Cyclophilin D-dependent mitochondrial permeability transition regulates some necrotic but not apoptotic cell death.

Published in:

Nature, 2005, v. 434, n. 7033, p. 652, doi. 10.1038/nature03317

By:

Nakagawa, Takashi;
Shimizu, Shigeomi;
Watanabe, Tetsuya;
Yamaguchi, Osamu;
Otsu, Kinya;
Yamagata, Hirotaka;
Inohara, Hidenori;
Kubo, Takeshi;
Tsujimoto, Yoshihide

Publication type:

Article

Modeling of Retina and Optic Nerve Ischemia–Reperfusion Injury through Hypoxia–Reoxygenation in Human Induced Pluripotent Stem Cell-Derived Retinal Ganglion Cells.

Published in:

Cells (2073-4409), 2024, v. 13, n. 2, p. 130, doi. 10.3390/cells13020130

By:

Yoshida, Tomoyo;
Yokoi, Tadashi;
Tanaka, Taku;
Matsuzaka, Emiko;
Saida, Yuki;
Nishina, Sachiko;
Takada, Shuji;
Shimizu, Shigeomi;
Azuma, Noriyuki

Publication type:

Article

Uncovering the Localization and Function of a Novel Read-Through Transcript ' TOMM40-APOE '.

Published in:

Cells (2073-4409), 2024, v. 13, n. 1, p. 69, doi. 10.3390/cells13010069

By:

Chang, Shichen;
Torii, Satoru;
Inamo, Jun;
Ishikawa, Kinya;
Kochi, Yuta;
Shimizu, Shigeomi

Publication type:

Article

An Overview of Golgi Membrane-Associated Degradation (GOMED) and Its Detection Methods.

Published in:

Cells (2073-4409), 2023, v. 12, n. 24, p. 2817, doi. 10.3390/cells12242817

By:

Sakurai, Hajime Tajima;
Arakawa, Satoko;
Yamaguchi, Hirofumi;
Torii, Satoru;
Honda, Shinya;
Shimizu, Shigeomi

Publication type:

Article

Small fluorescent molecules for monitoring autophagic flux.

Published in:

FEBS Letters, 2018, v. 592, n. 4, p. 559, doi. 10.1002/1873-3468.12979

By:

Iwashita, Hidefumi;
Sakurai, Hajime Tajima;
Nagahora, Noriyoshi;
Ishiyama, Munetaka;
Shioji, Kosei;
Sasamoto, Kazumi;
Okuma, Kentaro;
Shimizu, Shigeomi;
Ueno, Yuichiro

Publication type:

Article

The role of Cyclophilin D in learning and memory.

Published in:

Hippocampus, 2010, v. 20, n. 2, p. 293, doi. 10.1002/hipo.20625

By:

Mouri, Akihiro;
Noda, Yukihiro;
Shimizu, Shigeomi;
Tsujimoto, Yoshihide;
Nabeshima, Toshitaka

Publication type:

Article

Beclin 1 regulates recycling endosome and is required for skin development in mice.

Published in:

Communications Biology, 2019, v. 2, n. 1, p. N.PAG, doi. 10.1038/s42003-018-0279-0

By:

Noguchi, Saori;
Honda, Shinya;
Saitoh, Tatsuya;
Matsumura, Hiroyuki;
Nishimura, Emi;
Akira, Shizuo;
Shimizu, Shigeomi

Publication type:

Article

FLIP-based autophagy-detecting technique reveals closed autophagic compartments.

Published in:

Scientific Reports, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41598-022-26430-5

By:

Sakurai, Hajime Tajima;
Arakawa, Satoko;
Noguchi, Saori;
Shimizu, Shigeomi

Publication type:

Article

Homeostatic p62 levels and inclusion body formation in CHCHD2 knockout mice.

Published in:

Human Molecular Genetics, 2021, v. 30, n. 6, p. 443, doi. 10.1093/hmg/ddab057

By:

Sato, Shigeto;
Noda, Sachiko;
Torii, Satoru;
Amo, Taku;
Ikeda, Aya;
Funayama, Manabu;
Yamaguchi, Junji;
Fukuda, Takahiro;
Kondo, Hiromi;
Tada, Norihiro;
Arakawa, Satoko;
Watanabe, Masahiko;
Uchiyama, Yasuo;
Shimizu, Shigeomi;
Hattori, Nobutaka

Publication type:

Article

Mitochondrial E3 Ubiquitin Ligase Parkin: Relationships with Other Causal Proteins in Familial Parkinson's Disease and Its Substrate-Involved Mouse Experimental Models.

Published in:

International Journal of Molecular Sciences, 2020, v. 21, n. 4, p. 1202, doi. 10.3390/ijms21041202

By:

Torii, Satoru;
Kasai, Shuya;
Yoshida, Tatsushi;
Yasumoto, Ken-ichi;
Shimizu, Shigeomi

Publication type:

Article

Autophagic Cell Death and Cancer.

Published in:

International Journal of Molecular Sciences, 2014, v. 15, n. 2, p. 3145, doi. 10.3390/ijms15023145

By:

Shigeomi Shimizu;
Tatsushi Yoshida;
Masatsune Tsujioka;
Satoko Arakawa

Publication type:

Article

Essential Role of Voltage-dependent Anion Channel in Various Forms of Apoptosis in Mammalian Cells.

Published in:

Journal of Cell Biology, 2001, v. 152, n. 2, p. 237, doi. 10.1083/jcb.152.2.237

By:

Shimizu, Shigeomi;
Matsuoka, Yosuke

Publication type:

Article

Death-signalling cascade in mouse cerebellar granule neurons.

Published in:

European Journal of Neuroscience, 1998, v. 10, n. 4, p. 1403, doi. 10.1046/j.1460-9568.1998.00148.x

By:

Tanabe, Hiroki;
Eguchi, Yutaka;
Shimizu, Shigeomi;
Martinou, Jean‐Claude;
Tsujimoto, Yoshihide

Publication type:

Article

Association Between Autophagy and Neurodegenerative Diseases.

Published in:

Frontiers in Neuroscience, 2018, p. 1, doi. 10.3389/fnins.2018.00255

By:

Nobuhiro Fujikake;
Minkyoung Shin;
Shigeomi Shimizu

Publication type:

Article

Involvement of phosphorylation of ULK1 in alternative autophagy.

Published in:

Autophagy, 2020, v. 16, n. 8, p. 1532, doi. 10.1080/15548627.2020.1776476

By:

Torii, Satoru;
Shimizu, Shigeomi

Publication type:

Article

The targeting of cyclophilin D by RNAi as a novel cardioprotective therapy: evidence from two-photon imaging.

Published in:

Cardiovascular Research, 2009, v. 83, n. 2, p. 335, doi. 10.1093/cvr/cvp094

By:

Masashi Kato;
Masaharu Akao;
Madoka Matsumoto-Ida;
Takeru Makiyama;
Moritake Iguchi;
Toshihiro Takeda;
Shigeomi Shimizu;
Toru Kita

Publication type:

Article

Stress-Activated Protein Kinase MKK7 Regulates Axon Elongation in the Developing Cerebral Cortex.

Published in:

Journal of Neuroscience, 2011, v. 31, n. 46, p. 16872, doi. 10.1523/JNEUROSCI.1111-11.2011

By:

Tokiwa Yamasaki;
Hiroshi Kawasaki;
Satoko Arakawa;
Kimiko Shimizu;
Shigeomi Shimizu;
Reiner, Orly;
Hideyuki Okano;
Sachiko Nishina;
Noriyuki Azuma;
Penninger, Josef M.;
Toshiaki Katada;
Hiroshi Nishina

Publication type:

Article

Golgi membrane-associated degradation pathway in yeast and mammals.

Published in:

EMBO Journal, 2016, v. 35, n. 18, p. 1991, doi. 10.15252/embj.201593191

By:

Yamaguchi, Hirofumi;
Arakawa, Satoko;
Kanaseki, Toku;
Miyatsuka, Takeshi;
Fujitani, Yoshio;
Watada, Hirotaka;
Tsujimoto, Yoshihide;
Shimizu, Shigeomi

Publication type:

Article

Multicentric Carcinoma in situ Occurring in a Villous Adenoma of the Appendix.

Published in:

Digestive Surgery, 1991, v. 8, n. 1, p. 48, doi. 10.1159/000171995

By:

Furutani, Yasuhiro;
Nakao, Kazuyasu;
Hamaji, Masayasu;
Nakahara, Masaaki;
Shimizu, Shigeomi;
Tsujimoto, Masahiko

Publication type:

Article

Involvement of casein kinase 1 epsilon/delta (Csnk1e/d) in the pathogenesis of familial Parkinson's disease caused by CHCHD2.

Published in:

EMBO Molecular Medicine, 2023, v. 15, n. 9, p. 1, doi. 10.15252/emmm.202317451

By:

Torii, Satoru;
Arakawa, Satoko;
Sato, Shigeto;
Ishikawa, Kei‐ichi;
Taniguchi, Daisuke;
Sakurai, Hajime Tajima;
Honda, Shinya;
Hiraoka, Yuuichi;
Ono, Masaya;
Akamatsu, Wado;
Hattori, Nobutaka;
Shimizu, Shigeomi

Publication type:

Article

HMGB1 facilitates repair of mitochondrial DNA damage and extends the lifespan of mutant ataxin-1 knock-in mice.

Published in:

EMBO Molecular Medicine, 2015, v. 7, n. 1, p. 78, doi. 10.15252/emmm.201404392

By:

Ito, Hikaru;
Fujita, Kyota;
Tagawa, Kazuhiko;
Chen, Xigui;
Homma, Hidenori;
Sasabe, Toshikazu;
Shimizu, Jun;
Shimizu, Shigeomi;
Tamura, Takuya;
Muramatsu, Shin‐ichi;
Okazawa, Hitoshi

Publication type:

Article

Organelle zones in mitochondria.

Published in:

Journal of Biochemistry, 2019, v. 165, n. 2, p. 101, doi. 10.1093/jb/mvy068

By:

Shimizu, Shigeomi

Publication type:

Article

Crystal structure of human cyclophilin D in complex with its inhibitor, cyclosporin A at 0.96-Å resolution.

Published in:

Proteins, 2008, v. 70, n. 4, p. 1635, doi. 10.1002/prot.21855

By:

Kajitani, Kenji;
Fujihashi, Masahiro;
Kobayashi, Yukiko;
Shimizu, Shigeomi;
Tsujimoto, Yoshihide;
Miki, Kunio

Publication type:

Article

Molecular mechanisms and physiological roles of Atg5/Atg7-independent alternative autophagy.

Published in:

Proceedings of the Japan Academy, Series B Physical & biological sciences, 2017, v. 93, n. 6a, p. 378, doi. 10.2183/pjab.93.023

By:

Satoko ARAKAWA;
Shinya HONDA;
Hirofumi YAMAGUCHI;
Shigeomi SHIMIZU

Publication type:

Article

Prevention of hypoxia-induced cell death by Bcl-2 and Bcl-xL.

Published in:

Nature, 1995, v. 374, n. 6525, p. 811, doi. 10.1038/374811a0

By:

Shimizu, Shigeomi;
Eguchi, Yutaka

Publication type:

Article

Autophagy controls centrosome number by degrading Cep63.

Published in:

Nature Communications, 2016, v. 7, n. 11, p. 13508, doi. 10.1038/ncomms13508

By:

Watanabe, Yuichiro;
Honda, Shinya;
Konishi, Akimitsu;
Arakawa, Satoko;
Murohashi, Michiko;
Yamaguchi, Hirofumi;
Torii, Satoru;
Tanabe, Minoru;
Tanaka, Shinji;
Warabi, Eiji;
Shimizu, Shigeomi

Publication type:

Article

Ulk1-mediated Atg5-independent macroautophagy mediates elimination of mitochondria from embryonic reticulocytes.

Published in:

Nature Communications, 2014, v. 5, n. 6, p. 4004, doi. 10.1038/ncomms5004

By:

Honda, Shinya;
Arakawa, Satoko;
Nishida, Yuya;
Yamaguchi, Hirofumi;
Ishii, Eiichi;
Shimizu, Shigeomi

Publication type:

Article

Lactiplantibacillus plantarum OLL2712 Induces Autophagy via MYD88 and Strengthens Tight Junction Integrity to Promote the Barrier Function in Intestinal Epithelial Cells.

Published in:

Nutrients, 2023, v. 15, n. 12, p. 2655, doi. 10.3390/nu15122655

By:

Watanabe-Yasuoka, Yumiko;
Gotou, Ayako;
Shimizu, Shigeomi;
Sashihara, Toshihiro

Publication type:

Article

Autophagy takes an alternative pathway.

Published in:

Autophagy, 2010, v. 6, n. 2, p. 290, doi. 10.4161/auto.6.2.11127

By:

Shimizu, Shigeomi;
Arakawa, Satoko;
Nishida, Yuya

Publication type:

Article

Mitochondrial permeability transition mediates apoptosis induced by N -methyl(R )salsolinol, an endogenous neurotoxin, and is inhibited by Bcl-2 and rasagiline,N -propargyl-1(R )-aminoindan.

Published in:

Journal of Neurochemistry, 2002, v. 82, n. 4, p. 913, doi. 10.1046/j.1471-4159.2002.01047.x

By:

Akao, Yukihiro;
Maruyama, Wakako;
Shimizu, Shigeomi;
Yi, Hong;
Nakagawa, Yoshihito;
Shamoto-Nagai, Masayo;
Youdim, Moussa B. H.;
Tsujimoto, Yoshihide;
Naoi, Makoto

Publication type:

Article

Role of the mitochondrial membrane permeability transition in cell death.

Published in:

Apoptosis, 2007, v. 12, n. 5, p. 835, doi. 10.1007/s10495-006-0525-7

By:

Tsujimoto, Yoshihide;
Shimizu, Shigeomi

Publication type:

Article

BH4-domain peptide from Bcl-xL exerts anti-apoptotic activity in vivo.

Published in:

Oncogene, 2003, v. 22, n. 52, p. 8432, doi. 10.1038/sj.onc.1207180

By:

Sugioka, Rie;
Shimizu, Shigeomi;
Funatsu, Toshihiro;
Tamagawa, Hiroshi;
Sawa, Yoshiki;
Kawakami, Toru;
Tsujimoto, Yoshihide

Publication type:

Article

Activation of mitochondrial voltage-dependent anion channel by a pro-apoptotic BH3-only protein Bim.

Published in:

Oncogene, 2002, v. 21, n. 32, p. 4944, doi. 10.1038/sj.onc.1205621

By:

Sugiyama, Tomoyasu;
Shimizu, Shigeomi;
Matsuoka, Yosuke;
Yoneda, Yoshihiro;
Tsujimoto, Yoshihide

Publication type:

Article

Human gelsolin prevents apoptosis by inhibiting apoptotic mitochondrial changes via closing VDAC.

Published in:

Oncogene, 2000, v. 19, n. 42, p. 4807, doi. 10.1038/sj.onc.1203868

By:

Kusano, Hajime;
Shimizu, Shigeomi;
Koya, Richard Chikara;
Fujita, Hisakazu;
Kamada, Shinji;
Kuzumaki, Noboru;
Tsujimoto, Yoshihide

Publication type:

Article

Bax and Bcl-xL independently regulate apoptotic changes of yeast mitochondria that require VDAC but not adenine nucleotide translocator.

Published in:

Oncogene, 2000, v. 19, n. 38, p. 4309, doi. 10.1038/sj.onc.1203788

By:

Shimizu, Shigeomi;
Shinohara, Yasuo;
Tsujimoto, Yoshihide

Publication type:

Article

Bcl-2/E1B 19 kDa-interacting protein 3-like protein (Bnip3L) interacts with Bcl-2/Bcl-xL and induces apoptosis by altering mitochondrial membrane permeability.

Published in:

Oncogene, 1999, v. 18, n. 32, p. 4523, doi. 10.1038/sj.onc.1202722

By:

Imazu, Tetsuo;
Shimizu, Shigeomi;
Tagami, Shinji;
Matsushima, Mieko;
Nakamura, Yusuke;
Miki, Tsuneharu;
Okuyama, Akihiko;
Tsujimoto, Yoshihide

Publication type:

Article

JNK promotes Bax translocation to mitochondria through phosphorylation of 14-3-3 proteins.

Published in:

EMBO Journal, 2004, v. 23, n. 8, p. 1889, doi. 10.1038/sj.emboj.7600194

By:

Tsuruta, Furminori;
Sunayama, Jun;
Mori, Yasunori;
Hattori, Seisuke;
Shimizu, Shigeomi;
Tsujimoto, Yoshihide;
Yoshioka, Katsuji;
Masuyama, Norihisa;
Gotoh, Yukiko

Publication type:

Article

Bcl-2 family proteins regulate the release of apoptogenic cytochrome c by the mitochondrial channel VDAC.

Published in:

Nature, 1999, v. 399, n. 6735, p. 483, doi. 10.1038/20959

By:

Shimizu, Shigeomi;
Narita, Masashi;
Tsujimoto, Yoshihide

Publication type:

Article

Sanguisorba officinalis L. derived from herbal medicine prevents intestinal inflammation by inducing autophagy in macrophages.

Published in:

Scientific Reports, 2020, v. 10, n. 1, p. 1, doi. 10.1038/s41598-020-65306-4

By:

Yasueda, Asuka;
Kayama, Hisako;
Murohashi, Michiko;
Nishimura, Junichi;
Wakame, Koji;
Komatsu, Ken-ichi;
Ogino, Takayuki;
Miyoshi, Norikatsu;
Takahashi, Hidekazu;
Uemura, Mamoru;
Matsuda, Chu;
Kitagawa, Toru;
Takeda, Kiyoshi;
Ito, Toshinori;
Doki, Yuichiro;
Eguchi, Hidetoshi;
Shimizu, Shigeomi;
Mizushima, Tsunekazu

Publication type:

Article

Inhibition of the 53BP2S-mediated apoptosis by nuclear factor κB and Bcl-2 family proteins.

Published in:

Genes to Cells, 2005, v. 10, n. 8, p. 803, doi. 10.1111/j.1365-2443.2005.00878.x

By:

Takahashi, Naoko;
Kobayashi, Shinya;
Kajino, Shinichi;
Imai, Kenichi;
Tomoda, Keisuke;
Shimizu, Shigeomi;
Okamoto, Takashi

Publication type:

Article

Role of Bcl-2 family proteins in a non-apoptotic programmed cell death dependent on autophagy genes.

Published in:

Nature Cell Biology, 2004, v. 6, n. 12, p. 1221, doi. 10.1038/ncb1192

By:

Shimizu, Shigeomi;
Kanaseki, Toku;
Mizushima, Noboru;
Mizuta, Takeshi;
Arakawa-Kobayashi, Satoko;
Thompson, Craig B.;
Tsujimoto, Yoshihide

Publication type:

Article

Wipi3 is essential for alternative autophagy and its loss causes neurodegeneration.

Published in:

Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-020-18892-w

By:

Yamaguchi, Hirofumi;
Honda, Shinya;
Torii, Satoru;
Shimizu, Kimiko;
Katoh, Kaoru;
Miyake, Koichi;
Miyake, Noriko;
Fujikake, Nobuhiro;
Sakurai, Hajime Tajima;
Arakawa, Satoko;
Shimizu, Shigeomi

Publication type:

Article

Identification of a phosphorylation site on Ulk1 required for genotoxic stress-induced alternative autophagy.

Published in:

Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-020-15577-2

By:

Torii, Satoru;
Yamaguchi, Hirofumi;
Nakanishi, Akira;
Arakawa, Satoko;
Honda, Shinya;
Moriwaki, Kenta;
Nakano, Hiroyasu;
Shimizu, Shigeomi

Publication type:

Article

The CCR4-NOT deadenylase complex controls Atg7-dependent cell death and heart function.

Published in:

Science Signaling, 2018, v. 11, n. 516, p. 1, doi. 10.1126/scisignal.aan3638

By:

Yamaguchi, Tomokazu;
Suzuki, Takashi;
Sato, Teruki;
Takahashi, Akinori;
Watanabe, Hiroyuki;
Kadowaki, Ayumi;
Natsui, Miyuki;
Inagaki, Hideaki;
Arakawa, Satoko;
Nakaoka, Shinji;
Koizumi, Yukio;
Seki, Shinsuke;
Adachi, Shungo;
Fukao, Akira;
Fujiwara, Toshinobu;
Natsume, Tohru;
Kimura, Akinori;
Komatsu, Masaaki;
Shimizu, Shigeomi;
Ito, Hiroshi

Publication type:

Article