Works by Shima, Seigo

Results: 76

Didehydroaspartate Modification in Methyl-Coenzyme M Reductase Catalyzing Methane Formation.

Published in:

Angewandte Chemie, 2016, v. 128, n. 36, p. 10788, doi. 10.1002/ange.201603882

By:

Wagner, Tristan;
Kahnt, Jörg;
Ermler, Ulrich;
Shima, Seigo

Publication type:

Article

Identification of HcgC as a SAM-Dependent Pyridinol Methyltransferase in [Fe]-Hydrogenase Cofactor Biosynthesis.

Published in:

Angewandte Chemie, 2016, v. 128, n. 33, p. 9800, doi. 10.1002/ange.201604352

By:

Fujishiro, Takashi;
Bai, Liping;
Xu, Tao;
Xie, Xiulan;
Schick, Michael;
Kahnt, Jörg;
Rother, Michael;
Hu, Xile;
Ermler, Ulrich;
Shima, Seigo

Publication type:

Article

Innenrücktitelbild: Identification of the HcgB Enzyme in [Fe]-Hydrogenase-Cofactor Biosynthesis (Angew. Chem. 48/2013).

Published in:

Angewandte Chemie, 2013, v. 125, n. 48, p. 12979, doi. 10.1002/ange.201308951

By:

Fujishiro, Takashi;
Tamura, Haruka;
Schick, Michael;
Kahnt, Jörg;
Xie, Xiulan;
Ermler, Ulrich;
Shima, Seigo

Publication type:

Article

Identification of the HcgB Enzyme in [Fe]-Hydrogenase-Cofactor Biosynthesis.

Published in:

Angewandte Chemie, 2013, v. 125, n. 48, p. 12787, doi. 10.1002/ange.201306745

By:

Fujishiro, Takashi;
Tamura, Haruka;
Schick, Michael;
Kahnt, Jörg;
Xie, Xiulan;
Ermler, Ulrich;
Shima, Seigo

Publication type:

Article

Crystal Structures of [Fe]-Hydrogenase in Complex with Inhibitory Isocyanides: Implications for the H2-Activation Site.

Published in:

Angewandte Chemie, 2013, v. 125, n. 37, p. 9838, doi. 10.1002/ange.201305089

By:

Tamura, Haruka;
Salomone-Stagni, Marco;
Fujishiro, Takashi;
Warkentin, Eberhard;
Meyer-Klaucke, Wolfram;
Ermler, Ulrich;
Shima, Seigo

Publication type:

Article

The Crystal Structure of an [Fe]-Hydrogenase-Substrate Complex Reveals the Framework for H2 Activation.

Published in:

Angewandte Chemie International Edition, 2009, v. 48, n. 35, p. 6457, doi. 10.1002/anie.200902695

By:

Hiromoto, Takeshi;
Warkentin, Eberhard;
Moll, Johanna;
Ermler, Ulrich;
Shima, Seigo

Publication type:

Article

The Cofactor of the IronSulfur Cluster Free Hydrogenase Hmd: Structure of the Light-Inactivation Product ( The authors thank Prof. Dr. Stefan Berger (Universität Leipzig) for the determination of the high-resolution mass data, Dr. Stefan Bartoschek and Dr. Peter Grice (University of Cambridge, UK) for recording the broadband 13C NMR spectrum on a 13C detection cryoprobe, Prof. Dr. Thomas Carell (Universität Marburg) for helpful discussions, and Dr. Antonio Pierik for assistance with the fluorescence measurements. L.V. was funded by the European research network HPRN CT 2000 00092. )

Published in:

Angewandte Chemie International Edition, 2004, v. 43, n. 19, p. 2547, doi. 10.1002/anie.200353763

By:

Seigo Shima;
Erica J. Lyon;
Melanie Sordel-Klippert;
Manuela Kauß;
Jörg Kahnt;
Rudolf K. Thauer;
Klaus Steinbach;
Xiulan Xie;
Laurent Verdier;
Christian Griesinger

Publication type:

Article

Unveiling the Binding Modes of the Crystallophore, a Terbium‐based Nucleating and Phasing Molecular Agent for Protein Crystallography.

Published in:

Chemistry - A European Journal, 2018, v. 24, n. 39, p. 9739, doi. 10.1002/chem.201802172

By:

Engilberge, Sylvain;
Riobé, François;
Wagner, Tristan;
Di Pietro, Sebastiano;
Breyton, Cécile;
Franzetti, Bruno;
Shima, Seigo;
Girard, Eric;
Dumont, Elise;
Maury, Olivier

Publication type:

Article

Cover Feature: Unveiling the Binding Modes of the Crystallophore, a Terbium‐based Nucleating and Phasing Molecular Agent for Protein Crystallography (Chem. Eur. J. 39/2018).

Published in:

Chemistry - A European Journal, 2018, v. 24, n. 39, p. 9701, doi. 10.1002/chem.201802734

By:

Engilberge, Sylvain;
Riobé, François;
Wagner, Tristan;
Di Pietro, Sebastiano;
Breyton, Cécile;
Franzetti, Bruno;
Shima, Seigo;
Girard, Eric;
Dumont, Elise;
Maury, Olivier

Publication type:

Article

The exchange activities of [Fe] hydrogenase (iron–sulfur-cluster-free hydrogenase) from methanogenic archaea in comparison with the exchange activities of [FeFe] and [NiFe] hydrogenases.

Published in:

Journal of Biological Inorganic Chemistry (JBIC), 2008, v. 13, n. 1, p. 97, doi. 10.1007/s00775-007-0302-2

By:

Vogt, Sonja;
Lyon, Erica J.;
Shima, Seigo;
Thauer, Rudolf K.

Publication type:

Article

A reversed genetic approach reveals the coenzyme specificity and other catalytic properties of three enzymes putatively involved in anaerobic oxidation of methane with sulfate.

Published in:

Environmental Microbiology, 2014, v. 16, n. 11, p. 3431, doi. 10.1111/1462-2920.12475

By:

Kojima, Hisaya;
Moll, Johanna;
Kahnt, Jörg;
Fukui, Manabu;
Shima, Seigo

Publication type:

Article

Immunological detection of enzymes for sulfate reduction in anaerobic methane-oxidizing consortia.

Published in:

Environmental Microbiology, 2013, v. 15, n. 5, p. 1561, doi. 10.1111/1462-2920.12003

By:

Milucka, Jana;
Widdel, Friedrich;
Shima, Seigo

Publication type:

Article

Bacterial enzymes for dissimilatory sulfate reduction in a marine microbial mat (Black Sea) mediating anaerobic oxidation of methane.

Published in:

Environmental Microbiology, 2011, v. 13, n. 5, p. 1370, doi. 10.1111/j.1462-2920.2011.02443.x

By:

Basen, Mirko;
Krüger, Martin;
Milucka, Jana;
Kuever, Jan;
Kahnt, Jörg;
Grundmann, Olav;
Meyerdierks, Anke;
Widdel, Friedrich;
Shima, Seigo

Publication type:

Article

Denitrifying bacteria anaerobically oxidize methane in the absence of Archaea.

Published in:

Environmental Microbiology, 2008, v. 10, n. 11, p. 3164, doi. 10.1111/j.1462-2920.2008.01724.x

By:

Ettwig, Katharina F.;
Shima, Seigo;
van de Pas-Schoonen, Katinka T.;
Kahnt, Jörg;
Medema, Marnix H.;
op den Camp, Huub J. M.;
Jetten, Mike S. M.;
Strous, Marc

Publication type:

Article

Acyl and CO Ligands in the [Fe]‐Hydrogenase Cofactor Scramble upon Photolysis.

Published in:

Angewandte Chemie International Edition, 2024, v. 63, n. 6, p. 1, doi. 10.1002/anie.202316478

By:

Schaupp, Sebastian;
Arriaza‐Gallardo, Francisco J.;
Paczia, Nicole;
Ataka, Kenichi;
Shima, Seigo

Publication type:

Article

The Function of Two Radical‐SAM Enzymes, HcgA and HcgG, in the Biosynthesis of the [Fe]‐Hydrogenase Cofactor.

Published in:

Angewandte Chemie International Edition, 2022, v. 61, n. 50, p. 1, doi. 10.1002/anie.202213239

By:

Arriaza‐Gallardo, Francisco J.;
Schaupp, Sebastian;
Zheng, Yu‐Cong;
Abdul‐Halim, Mohd Farid;
Pan, Hui‐Jie;
Kahnt, Jörg;
Angelidou, Georgia;
Paczia, Nicole;
Hu, Xile;
Costa, Kyle;
Shima, Seigo

Publication type:

Article

In Vitro Biosynthesis of the [Fe]‐Hydrogenase Cofactor Verifies the Proposed Biosynthetic Precursors.

Published in:

Angewandte Chemie International Edition, 2022, v. 61, n. 22, p. 1, doi. 10.1002/anie.202200994

By:

Schaupp, Sebastian;
Arriaza‐Gallardo, Francisco J.;
Pan, Hui‐jie;
Kahnt, Jörg;
Angelidou, Georgia;
Paczia, Nicole;
Costa, Kyle;
Hu, Xile;
Shima, Seigo

Publication type:

Article

Crystallization and Preliminary X-Ray Diffraction Studies of Methyl-Coenzyme M Reductase from Methanobacterium thermoautotrophicum.

Published in:

Journal of Biochemistry, 1997, v. 121, n. 5, p. 829, doi. 10.1093/oxfordjournals.jbchem.a021660

By:

Shima, Seigo;
Goubeaud, Marcel;
Vinzenz, Daniela;
Thauer, Rudolf K.;
Ermler, Ulrich

Publication type:

Article

MtrA of the sodium ion pumping methyltransferase binds cobalamin in a unique mode.

Published in:

Scientific Reports, 2016, p. 28226, doi. 10.1038/srep28226

By:

Wagner, Tristan;
Ermler, Ulrich;
Shima, Seigo

Publication type:

Article

Crystallization and preliminary X-ray diffraction studies of formylmethanofuran: Tetrahydromethanopterin formyltransferase from Methanopyrus kandleri.

Published in:

Proteins, 1996, v. 26, n. 1, p. 118, doi. 10.1002/(SICI)1097-0134(199609)26:1<118::AID-PROT12>3.0.CO;2-J

By:

Shima, Seigo;
Thauer, Rudolf K.;
Michel, Hartmut;
Ermler, Ulrich

Publication type:

Article

Isolation of an H2‐dependent electron‐bifurcating CO2‐reducing megacomplex with MvhB polyferredoxin from Methanothermobacter marburgensis.

Published in:

FEBS Journal, 2024, v. 291, n. 11, p. 2449, doi. 10.1111/febs.17115

By:

Nomura, Shunsuke;
Paczia, Nicole;
Kahnt, Jörg;
Shima, Seigo

Publication type:

Article

Acyl and CO Ligands in the [Fe]‐Hydrogenase Cofactor Scramble upon Photolysis.

Published in:

Angewandte Chemie, 2024, v. 136, n. 6, p. 1, doi. 10.1002/ange.202316478

By:

Schaupp, Sebastian;
Arriaza‐Gallardo, Francisco J.;
Paczia, Nicole;
Ataka, Kenichi;
Shima, Seigo

Publication type:

Article

The Function of Two Radical‐SAM Enzymes, HcgA and HcgG, in the Biosynthesis of the [Fe]‐Hydrogenase Cofactor.

Published in:

Angewandte Chemie, 2022, v. 134, n. 50, p. 1, doi. 10.1002/ange.202213239

By:

Arriaza‐Gallardo, Francisco J.;
Schaupp, Sebastian;
Zheng, Yu‐Cong;
Abdul‐Halim, Mohd Farid;
Pan, Hui‐Jie;
Kahnt, Jörg;
Angelidou, Georgia;
Paczia, Nicole;
Hu, Xile;
Costa, Kyle;
Shima, Seigo

Publication type:

Article

A third type of hydrogenase catalyzing H2 activation.

Published in:

Chemical Record, 2007, v. 7, n. 1, p. 37, doi. 10.1002/tcr.20111

By:

Shima, Seigo;
Thauer, Rudolf K.

Publication type:

Article

Crystal Structures of [Fe]-Hydrogenase from Methanolacinia paynteri Suggest a Path of the FeGP-Cofactor Incorporation Process.

Published in:

Inorganics, 2020, v. 8, n. 9, p. 50, doi. 10.3390/inorganics8090050

By:

Huang, Gangfeng;
Arriaza-Gallardo, Francisco Javier;
Wagner, Tristan;
Shima, Seigo

Publication type:

Article

Dentatorubral-pallidoluysian atrophy protein is phosphorylated by c-Jun NH2-terminal kinase.

Published in:

Human Molecular Genetics, 2003, v. 12, n. 13, p. 1535, doi. 10.1093/hmg/ddg168

By:

Okamura-Oho, Yuko;
Miyashita, Toshiyuki;
Nagao, Kazuaki;
Shima, Seigo;
Ogata, Yukie;
Katada, Toshiaki;
Nishina, Hiroshi;
Yamada, Masao

Publication type:

Article

Structures of F420H2:NADP+ oxidoreductase with and without its substrates bound.

Published in:

EMBO Journal, 2001, v. 20, n. 23, p. 6561, doi. 10.1093/emboj/20.23.6561

By:

Warkentin, Eberhard;
Mamat, Björn;
Sordel-Klippert, Melanie;
Wicke, Michaela;
Thauer, Rudolf K.;
Iwata, Momi;
Iwata, So;
Ermler, Ulrich;
Shima, Seigo

Publication type:

Article

Protein crystal structure determination with the crystallophore, a nucleating and phasing agent.

Published in:

Journal of Applied Crystallography, 2019, v. 52, n. 4, p. 722, doi. 10.1107/S1600576719006381

By:

Engilberge, Sylvain;
Wagner, Tristan;
Santoni, Gianluca;
Breyton, Cécile;
Shima, Seigo;
Franzetti, Bruno;
Riobé, Francois;
Maury, Olivier;
Girard, Eric

Publication type:

Article

Crystal structure of archaeal HMG‐CoA reductase: insights into structural changes of the C‐terminal helix of the class‐I enzyme.

Published in:

FEBS Letters, 2019, v. 593, n. 5, p. 543, doi. 10.1002/1873-3468.13331

By:

Vögeli, Bastian;
Shima, Seigo;
Erb, Tobias J.;
Wagner, Tristan

Publication type:

Article

A possible iron delivery function of the dinuclear iron center of HcgD in [Fe]‐hydrogenase cofactor biosynthesis.

Published in:

FEBS Letters, 2014, v. 588, n. 17, p. 2789, doi. 10.1016/j.febslet.2014.05.059

By:

Fujishiro, Takashi;
Ermler, Ulrich;
Shima, Seigo

Publication type:

Article

Isocyanides inhibit [Fe]-hydrogenase with very high affinity

Published in:

FEBS Letters, 2011, v. 585, n. 2, p. 353, doi. 10.1016/j.febslet.2010.12.014

By:

Shima, Seigo;
Ataka, Kenichi

Publication type:

Article

The crystal structure of C176A mutated [Fe]-hydrogenase suggests an acyl-iron ligation in the active site iron complex

Published in:

FEBS Letters, 2009, v. 583, n. 3, p. 585, doi. 10.1016/j.febslet.2009.01.017

By:

Hiromoto, Takeshi;
Ataka, Kenichi;
Pilak, Oliver;
Vogt, Sonja;
Stagni, Marco Salomone;
Meyer-Klaucke, Wolfram;
Warkentin, Eberhard;
Thauer, Rudolf K.;
Shima, Seigo;
Ermler, Ulrich

Publication type:

Article

In Vitro Biosynthesis of the [Fe]‐Hydrogenase Cofactor Verifies the Proposed Biosynthetic Precursors.

Published in:

Angewandte Chemie, 2022, v. 134, n. 22, p. 1, doi. 10.1002/ange.202200994

By:

Schaupp, Sebastian;
Arriaza‐Gallardo, Francisco J.;
Pan, Hui‐jie;
Kahnt, Jörg;
Angelidou, Georgia;
Paczia, Nicole;
Costa, Kyle;
Hu, Xile;
Shima, Seigo

Publication type:

Article

Diversifying Metal–Ligand Cooperative Catalysis in Semi‐Synthetic [Mn]‐Hydrogenases.

Published in:

Angewandte Chemie, 2021, v. 133, n. 24, p. 13462, doi. 10.1002/ange.202100443

By:

Pan, Hui‐Jie;
Huang, Gangfeng;
Wodrich, Matthew D.;
Tirani, Farzaneh Fadaei;
Ataka, Kenichi;
Shima, Seigo;
Hu, Xile

Publication type:

Article

X‐ray Crystallography and Vibrational Spectroscopy Reveal the Key Determinants of Biocatalytic Dihydrogen Cycling by [NiFe] Hydrogenases.

Published in:

Angewandte Chemie, 2019, v. 131, n. 51, p. 18883, doi. 10.1002/ange.201908258

By:

Ilina, Yulia;
Lorent, Christian;
Katz, Sagie;
Jeoung, Jae‐Hun;
Shima, Seigo;
Horch, Marius;
Zebger, Ingo;
Dobbek, Holger

Publication type:

Article

The Bacterial [Fe]‐Hydrogenase Paralog HmdII Uses Tetrahydrofolate Derivatives as Substrates.

Published in:

Angewandte Chemie, 2019, v. 131, n. 11, p. 3544, doi. 10.1002/ange.201813465

By:

Watanabe, Tomohiro;
Wagner, Tristan;
Huang, Gangfeng;
Kahnt, Jörg;
Ataka, Kenichi;
Ermler, Ulrich;
Shima, Seigo

Publication type:

Article

How [Fe]‐Hydrogenase from Methanothermobacter is Protected Against Light and Oxidative Stress.

Published in:

Angewandte Chemie, 2018, v. 130, n. 46, p. 15276, doi. 10.1002/ange.201807203

By:

Wagner, Tristan;
Huang, Gangfeng;
Ermler, Ulrich;
Shima, Seigo

Publication type:

Article

Dioxygen Sensitivity of [Fe]‐Hydrogenase in the Presence of Reducing Substrates.

Published in:

Angewandte Chemie, 2018, v. 130, n. 18, p. 5011, doi. 10.1002/ange.201712293

By:

Huang, Gangfeng;
Wagner, Tristan;
Ermler, Ulrich;
Bill, Eckhard;
Ataka, Kenichi;
Shima, Seigo

Publication type:

Article

A Water-Bridged H-Bonding Network Contributes to the Catalysis of the SAM-Dependent C-Methyltransferase HcgC.

Published in:

Angewandte Chemie, 2017, v. 129, n. 36, p. 10946, doi. 10.1002/ange.201705605

By:

Bai, Liping;
Wagner, Tristan;
Xu, Tao;
Hu, Xile;
Ermler, Ulrich;
Shima, Seigo

Publication type:

Article

Biologische Methanbildung: Bestätigung des Reaktionsmechanismus durch spektroskopische Charakterisierung eines Schlüsselintermediats.

Published in:

Angewandte Chemie, 2016, v. 128, n. 44, p. 13848, doi. 10.1002/ange.201606269

By:

Shima, Seigo

Publication type:

Article

F420H2 oxidase (FprA) fromMethanobrevibacter arboriphilus, a coenzyme F420-dependent enzyme involved in O2 detoxification.

Published in:

Archives of Microbiology, 2004, v. 182, n. 2/3, p. 126, doi. 10.1007/s00203-004-0675-3

By:

Seedorf, Henning;
Dreisbach, Annette;
Hedderich, Reiner;
Shima, Seigo;
Thauer, Rudolf K.

Publication type:

Article

Protection of Methanosarcina barkeri against oxidative stress: identification and characterization of an iron superoxide dismutase.

Published in:

Archives of Microbiology, 2000, v. 174, n. 3, p. 213, doi. 10.1007/s002030000180

By:

Brioukhanov, Andrei;
Netrusov, Alexander;
Sordel, Melanie;
Thauer, Rudolf K.;
Shima, Seigo

Publication type:

Article

A conspicuous nickel protein in microbial mats that oxidize methane anaerobically.

Published in:

Nature, 2003, v. 426, n. 6968, p. 878, doi. 10.1038/nature02207

By:

Krüger, Martin;
Meyerdierks, Anke;
Glöckner, Frank Oliver;
Amann, Rudolf;
Widdel, Friedrich;
Kube, Michael;
Reinhardt, Richard;
Kahnt, Jörg;
Böcher, Reinhard;
Thauer, Rudolf K.;
Shima, Seigo

Publication type:

Article

Protein-pyridinol thioester precursor for biosynthesis of the organometallic acyl-iron ligand in [Fe]-hydrogenase cofactor.

Published in:

Nature Communications, 2015, v. 6, n. 4, p. 6895, doi. 10.1038/ncomms7895

By:

Fujishiro, Takashi;
Kahnt, Jörg;
Ermler, Ulrich;
Shima, Seigo

Publication type:

Article

Towards a functional identification of catalytically inactive [Fe]-hydrogenase paralogs.

Published in:

FEBS Journal, 2015, v. 282, n. 17, p. 3412, doi. 10.1111/febs.13351

By:

Fujishiro, Takashi;
Ataka, Kenichi;
Ermler, Ulrich;
Shima, Seigo

Publication type:

Article

Post-translational modifications in the active site region of methyl-coenzyme M reductase from methanogenic and methanotrophic archaea.

Published in:

FEBS Journal, 2007, v. 274, n. 18, p. 4913, doi. 10.1111/j.1742-4658.2007.06016.x

By:

Kahnt, Jörg;
Buchenau, Bärbel;
Mahlert, Felix;
Krüger, Martin;
Shima, Seigo;
Thauer, Rudolf K.

Publication type:

Article

Structure of coenzyme F420H2 oxidase (FprA), a di-iron flavoprotein from methanogenic Archaea catalyzing the reduction of O2 to H2O.

Published in:

FEBS Journal, 2007, v. 274, n. 6, p. 1588, doi. 10.1111/j.1742-4658.2007.05706.x

By:

Seedorf, Henning;
Hagemeier, Christoph H.;
Shima, Seigo;
Thauer, Rudolf K.;
Warkentin, Eberhard;
Ermler, Ulrich

Publication type:

Article

[Fe]‐Hydrogenase, Cofactor Biosynthesis and Engineering.

Published in:

ChemBioChem, 2023, v. 24, n. 20, p. 1, doi. 10.1002/cbic.202300330

By:

Arriaza‐Gallardo, Francisco J.;
Zheng, Yu‐Cong;
Gehl, Manuel;
Nomura, Shunsuke;
Fernandes‐Queiroz, J. Pedro;
Shima, Seigo

Publication type:

Article

Biogeochemistry: Methane and microbes.

Published in:

Nature, 2006, v. 440, n. 7086, p. 878, doi. 10.1038/440878a

By:

Thauer, Rudolf K.;
Shima, Seigo

Publication type:

Article

Identification of trf2 mutants of Drosophila with defects in anterior spiracle eversion.

Published in:

Archives of Insect Biochemistry & Physiology, 2007, v. 64, n. 4, p. 157, doi. 10.1002/arch.20166

By:

Shima, Seigo;
Aigaki, Toshiro;
Nojima, Tetsuya;
Yamamoto, Daisuke

Publication type:

Article