Works matching AU Shih, David J. H.

Results: 12

CNGPLD: case–control copy-number analysis using Gaussian process latent difference.

Published in:

Bioinformatics, 2022, v. 38, n. 8, p. 2096, doi. 10.1093/bioinformatics/btac096

By:

Shih, David J H;
Li, Ruoxing;
Müller, Peter;
Zheng, W Jim;
Do, Kim-Anh;
Lin, Shiaw-Yih;
Carter, Scott L

Publication type:

Article

Learning and teaching biological data science in the Bioconductor community.

Published in:

PLoS Computational Biology, 2025, v. 21, n. 4, p. 1, doi. 10.1371/journal.pcbi.1012925

By:

Drnevich, Jenny;
Tan, Frederick J.;
Almeida-Silva, Fabricio;
Castelo, Robert;
Culhane, Aedin C.;
Davis, Sean;
Doyle, Maria A.;
Geistlinger, Ludwig;
Ghazi, Andrew R.;
Holmes, Susan;
Lahti, Leo;
Mahmoud, Alexandru;
Nishida, Kozo;
Ramos, Marcel;
Rue-Albrecht, Kevin;
Shih, David J. H.;
Gatto, Laurent;
Soneson, Charlotte

Publication type:

Article

A Gene Expression Signature to Predict Nucleotide Excision Repair Defects and Novel Therapeutic Approaches.

Published in:

International Journal of Molecular Sciences, 2021, v. 22, n. 9, p. 5008, doi. 10.3390/ijms22095008

By:

Wei, Rongbin;
Dai, Hui;
Zhang, Jing;
Shih, David J. H.;
Liang, Yulong;
Xiao, Pengfeng;
McGrail, Daniel J.;
Lin, Shiaw-Yih;
Kim, Heui-Soo

Publication type:

Article

The IL6/JAK/STAT3 signaling axis is a therapeutic vulnerability in SMARCB1-deficient bladder cancer.

Published in:

Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-45132-2

By:

Amara, Chandra Sekhar;
Kami Reddy, Karthik Reddy;
Yuntao, Yang;
Chan, Yuen San;
Piyarathna, Danthasinghe Waduge Badrajee;
Dobrolecki, Lacey Elizabeth;
Shih, David J. H.;
Shi, Zhongcheng;
Xu, Jun;
Huang, Shixia;
Ellis, Matthew J.;
Apolo, Andrea B.;
Ballester, Leomar Y.;
Gao, Jianjun;
Hansel, Donna E.;
Lotan, Yair;
Hodges, H. Courtney;
Lerner, Seth P.;
Creighton, Chad J.;
Sreekumar, Arun

Publication type:

Article

Transcriptional signature of durable effector T cells elicited by a replication defective HCMV vaccine.

Published in:

NPJ Vaccines, 2024, v. 9, n. 1, p. 1, doi. 10.1038/s41541-024-00860-w

By:

Ye, Xiaohua;
Shih, David J. H.;
Ku, Zhiqiang;
Hong, Junping;
Barrett, Diane F.;
Rupp, Richard E.;
Zhang, Ningyan;
Fu, Tong-Ming;
Zheng, W. Jim;
An, Zhiqiang

Publication type:

Article

Heterogeneity within the PF-EPN-B ependymoma subgroup.

Published in:

Acta Neuropathologica, 2018, v. 136, n. 2, p. 227, doi. 10.1007/s00401-018-1888-x

By:

Cavalli, Florence M. G.;
Hübner, Jens-Martin;
Sharma, Tanvi;
Luu, Betty;
Sill, Martin;
Zapotocky, Michal;
Mack, Stephen C.;
Witt, Hendrik;
Lin, Tong;
Shih, David J. H.;
Ho, Ben;
Santi, Mariarita;
Emery, Lyndsey;
Hukin, Juliette;
Dunham, Christopher;
McLendon, Roger E.;
Lipp, Eric S.;
Gururangan, Sridharan;
Grossbach, Andrew;
French, Pim

Publication type:

Article

<i>TERT</i> promoter mutations are highly recurrent in SHH subgroup medulloblastoma.

Published in:

Acta Neuropathologica, 2013, v. 126, n. 6, p. 917, doi. 10.1007/s00401-013-1198-2

By:

Remke, Marc;
Ramaswamy, Vijay;
Peacock, John;
Shih, David J. H.;
Koelsche, Christian;
Northcott, Paul A.;
Hill, Nadia;
Cavalli, Florence M. G.;
Kool, Marcel;
Wang, Xin;
Mack, Stephen C.;
Barszczyk, Mark;
Morrissy, A. Sorana;
Wu, Xiaochong;
Agnihotri, Sameer;
Luu, Betty;
Jones, David T. W.;
Garzia, Livia;
Dubuc, Adrian M.;
Zhukova, Nataliya

Publication type:

Article

Role of DNA repair defects in predicting immunotherapy response.

Published in:

Biomarker Research, 2020, v. 8, n. 1, p. 1, doi. 10.1186/s40364-020-00202-7

By:

Zhang, Jing;
Shih, David J. H.;
Lin, Shiaw-Yih

Publication type:

Article

Cellular origins and genetic landscape of cutaneous gamma delta T cell lymphomas.

Published in:

Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-020-15572-7

By:

Daniels, Jay;
Doukas, Peter G.;
Escala, Maria E. Martinez;
Ringbloom, Kimberly G.;
Shih, David J. H.;
Yang, Jingyi;
Tegtmeyer, Kyle;
Park, Joonhee;
Thomas, Jane J.;
Selli, Mehmet E.;
Altunbulakli, Can;
Gowthaman, Ragul;
Mo, Samuel H.;
Jothishankar, Balaji;
Pease, David R.;
Pro, Barbara;
Abdulla, Farah R.;
Shea, Christopher;
Sahni, Nidhi;
Gru, Alejandro A.

Publication type:

Article

Subgroup-specific structural variation across 1,000 medulloblastoma genomes.

Published in:

Nature, 2012, v. 488, n. 7409, p. 49, doi. 10.1038/nature11327

By:

Northcott, Paul A.;
Shih, David J. H.;
Peacock, John;
Garzia, Livia;
Sorana Morrissy, A.;
Zichner, Thomas;
Stütz, Adrian M.;
Korshunov, Andrey;
Reimand, Jüri;
Schumacher, Steven E.;
Beroukhim, Rameen;
Ellison, David W.;
Marshall, Christian R.;
Lionel, Anath C.;
Mack, Stephen;
Dubuc, Adrian;
Yao, Yuan;
Ramaswamy, Vijay;
Luu, Betty;
Rolider, Adi

Publication type:

Article

Clonal selection drives genetic divergence of metastatic medulloblastoma.

Published in:

Nature, 2012, v. 482, n. 7386, p. 529, doi. 10.1038/nature10825

By:

Wu, Xiaochong;
Northcott, Paul A.;
Dubuc, Adrian;
Dupuy, Adam J.;
Shih, David J. H.;
Witt, Hendrik;
Croul, Sidney;
Bouffet, Eric;
Fults, Daniel W.;
Eberhart, Charles G.;
Garzia, Livia;
Van Meter, Timothy;
Zagzag, David;
Jabado, Nada;
Schwartzentruber, Jeremy;
Majewski, Jacek;
Scheetz, Todd E.;
Pfister, Stefan M.;
Korshunov, Andrey;
Li, Xiao-Nan

Publication type:

Article

Enhancer hijacking activates GFI1 family oncogenes in medulloblastoma.

Published in:

Nature, 2014, v. 511, n. 7510, p. 428, doi. 10.1038/nature13379

By:

Northcott, Paul A.;
Lee, Catherine;
Zichner, Thomas;
Stütz, Adrian M.;
Erkek, Serap;
Kawauchi, Daisuke;
Shih, David J. H.;
Hovestadt, Volker;
Zapatka, Marc;
Sturm, Dominik;
Jones, David T. W.;
Kool, Marcel;
Remke, Marc;
Cavalli, Florence M. G.;
Zuyderduyn, Scott;
Bader, Gary D.;
VandenBerg, Scott;
Esparza, Lourdes Adriana;
Ryzhova, Marina;
Wang, Wei

Publication type:

Article