Works matching AU Shevchenko, Andrej

Results: 98

Assigning spectrum-specific P-values to protein identifications by mass spectrometry.

Published in:

Bioinformatics, 2011, v. 27, n. 8, p. 1128, doi. 10.1093/bioinformatics/btr089

By:

Spirin, Victor;
Shpunt, Alexander;
Seebacher, Jan;
Gentzel, Marc;
Shevchenko, Andrej;
Gygi, Steven;
Sunyaev, Shamil

Publication type:

Article

Shedding light on silica biomineralization by comparative analysis of the silica‐associated proteomes from three diatom species.

Published in:

Plant Journal, 2022, v. 110, n. 6, p. 1700, doi. 10.1111/tpj.15765

By:

Skeffington, Alastair W.;
Gentzel, Marc;
Ohara, Andre;
Milentyev, Alexander;
Heintze, Christoph;
Böttcher, Lorenz;
Görlich, Stefan;
Shevchenko, Andrej;
Poulsen, Nicole;
Kröger, Nils

Publication type:

Article

Dried-droplet probe preparation on AnchorChip™ targets for navigating the acquisition of matrix-assisted laser desorption/ionization time-of-flight spectra by fluorescence of matrix/analyte crystals.

Published in:

Rapid Communications in Mass Spectrometry: RCM, 2004, v. 18, n. 9, p. 923, doi. 10.1002/rcm.1427

By:

Thomas, Henrik;
Havliš, Jan;
Peychl, Jan;
Shevchenko, Andrej

Publication type:

Article

Simple two-point calibration of hybrid quadrupole time-of-flight instruments using a synthetic lipid standard.

Published in:

Rapid Communications in Mass Spectrometry: RCM, 2002, v. 16, n. 12, p. 1254, doi. 10.1002/rcm.705

By:

Ekroos, Kim;
Shevchenko, Andrej

Publication type:

Article

Rapid ' de novo' peptide sequencing by a combination of nanoelectrospray, isotopic labeling and a quadrupole/time-of-flight mass spectrometer.

Published in:

Rapid Communications in Mass Spectrometry: RCM, 1997, v. 11, n. 9, p. 1015, doi. 10.1002/(SICI)1097-0231(19970615)11:9<1015::AID-RCM958>3.0.CO;2-H

By:

Shevchenko, Andrej;
Chernushevich, Igor;
Ens, Werner;
Standing, Kenneth G.;
Thomson, Bruce;
Wilm, Matthias;
Mann, Matthias

Publication type:

Article

“De novo” sequencing of peptides recovered from in-gel digested proteins by nanoelectrospray tandem mass spectrometry.

Published in:

Molecular Biotechnology, 2002, v. 20, n. 1, p. 107, doi. 10.1385/MB:20:1:107

By:

Shevchenko, Andrej;
Chernushevich, Igor;
Shevchenko, Anna;
Wilm, Matthias;
Mann, Matthias

Publication type:

Article

Eye proteome of Drosophila melanogaster.

Published in:

Proteomics, 2024, v. 24, n. 10, p. 1, doi. 10.1002/pmic.202300330

By:

Kumar, Mukesh;
Has, Canan;
Lam‐Kamath, Khanh;
Ayciriex, Sophie;
Dewett, Deepshe;
Bashir, Mhamed;
Poupault, Clara;
Schuhmann, Kai;
Thomas, Henrik;
Knittelfelder, Oskar;
Raghuraman, Bharath Kumar;
Ahrends, Robert;
Rister, Jens;
Shevchenko, Andrej

Publication type:

Article

Cycling of the signaling protein phospholipase D through cilia requires the BBSome only for the export phase.

Published in:

Journal of Cell Biology, 2013, v. 201, n. 2, p. 249, doi. 10.1083/jcb.201207139

By:

Lechtreck, Karl F.;
Brown, Jason M.;
Sampaio, Julio L.;
Craft, Julie M.;
Shevchenko, Andrej;
Evans, James E.;
Witman, George B.

Publication type:

Article

Quantitative analysis of the lipidomes of the influenza virus envelope and MDCK cell apical membrane.

Published in:

Journal of Cell Biology, 2012, v. 196, n. 2, p. 213, doi. 10.1083/jcb.201108175

By:

Gerl, Mathias J.;
Sampaio, Julio L.;
Urban, Severino;
Kalvodova, Lucie;
Verbavatz, Jean-Marc;
Binnington, Beth;
Lindemann, Dirk;
Lingwood, Clifford A.;
Shevchenko, Andrej;
Schroeder, Cornelia;
Simons, Kai

Publication type:

Article

Direct regulation of Treslin by cyclin-dependent kinase is essential for the onset of DNA replication.

Published in:

Journal of Cell Biology, 2011, v. 193, n. 6, p. 995, doi. 10.1083/jcb.201102003

By:

Kumagai, Akiko;
Shevchenko, Anna;
Shevchenko, Andrej;
Dunphy, William G.

Publication type:

Article

Segregation of sphingolipids and sterols during formation of secretory vesicles at the trans-Golgi network.

Published in:

Journal of Cell Biology, 2009, v. 185, n. 4, p. 601, doi. 10.1083/jcb.200901145

By:

Klemm, Robin W.;
Ejsing, Christer S.;
Surma, Michal A.;
Kaiser, Hermann-Josef;
Gerl, Mathias J.;
Sampaio, Julio L.;
de Robillard, Quentin;
Ferguson, Charles;
Proszynski, Tomasz J.;
Shevchenko, Andrej;
Simons, Kai

Publication type:

Article

Phosphoinositide Profile of the Mouse Retina.

Published in:

Cells (2073-4409), 2020, v. 9, n. 6, p. 1417, doi. 10.3390/cells9061417

By:

Finkelstein, Stella;
Gospe III, Sidney M.;
Schuhmann, Kai;
Shevchenko, Andrej;
Arshavsky, Vadim Y.;
Lobanova, Ekaterina S.

Publication type:

Article

Quality control requirements for the correct annotation of lipidomics data.

Published in:

2021

By:

Köfeler, Harald C.;
Eichmann, Thomas O.;
Ahrends, Robert;
Bowden, John A.;
Danne-Rasche, Niklas;
Dennis, Edward A.;
Fedorova, Maria;
Griffiths, William J.;
Han, Xianlin;
Hartler, Jürgen;
Holčapek, Michal;
Jirásko, Robert;
Koelmel, Jeremy P.;
Ejsing, Christer S.;
Liebisch, Gerhard;
Ni, Zhixu;
O'Donnell, Valerie B.;
Quehenberger, Oswald;
Schwudke, Dominik;
Shevchenko, Andrej

Publication type:

Letter

The Diurnal Timing of Starvation Differently Impacts Murine Hepatic Gene Expression and Lipid Metabolism – A Systems Biology Analysis Using Self-Organizing Maps.

Published in:

Frontiers in Physiology, 2018, p. N.PAG, doi. 10.3389/fphys.2018.01180

By:

Rennert, Christiane;
Vlaic, Sebastian;
Marbach-Breitrück, Eugenia;
Thiel, Carlo;
Sales, Susanne;
Shevchenko, Andrej;
Gebhardt, Rolf;
Matz-Soja, Madlen

Publication type:

Article

Molecular Strategies of the <i>Caenorhabditis elegans</i> Dauer Larva to Survive Extreme Desiccation.

Published in:

PLoS ONE, 2013, v. 8, n. 12, p. 1, doi. 10.1371/journal.pone.0082473

By:

Erkut, Cihan;
Vasilj, Andrej;
Boland, Sebastian;
Habermann, Bianca;
Shevchenko, Andrej;
Kurzchalia, Teymuras V.

Publication type:

Article

Plasma Lipid Composition and Risk of Developing Cardiovascular Disease.

Published in:

PLoS ONE, 2013, v. 8, n. 8, p. 1, doi. 10.1371/journal.pone.0071846

By:

Fernandez, Celine;
Sandin, Marianne;
Sampaio, Julio L.;
Almgren, Peter;
Narkiewicz, Krzysztof;
Hoffmann, Michal;
Hedner, Thomas;
Wahlstrand, Björn;
Simons, Kai;
Shevchenko, Andrej;
James, Peter;
Melander, Olle

Publication type:

Article

3D Profile-Based Approach to Proteome-Wide Discovery of Novel Human Chemokines.

Published in:

PLoS ONE, 2012, v. 7, n. 5, p. 1, doi. 10.1371/journal.pone.0036151

By:

Tomczak, Aurelie;
Sontheimer, Jana;
Drechsel, David;
Hausdorf, Rainer;
Gentzel, Marc;
Shevchenko, Andrej;
Eichler, Stefanie;
Fahmy, Karim;
Buchholz, Frank;
Pisabarro, M. Teresa

Publication type:

Article

Flexibility of a Eukaryotic Lipidome - Insights from Yeast Lipidomics.

Published in:

PLoS ONE, 2012, v. 7, n. 4, p. 1, doi. 10.1371/journal.pone.0035063

By:

Klose, Christian;
Surma, Michal A.;
Gerl, Mathias J.;
Meyenhofer, Felix;
Shevchenko, Andrej;
Simons, Kai

Publication type:

Article

Molecular Etiology of Atherogenesis -- In Vitro Induction of Lipidosis in Macrophages with a New LDL Model.

Published in:

PLoS ONE, 2012, v. 7, n. 4, p. 1, doi. 10.1371/journal.pone.0034822

By:

Estronca, Luis M. B. B.;
Silva, Joao C. P.;
Sampaio, Julio L.;
Shevchenko, Andrej;
Verkade, Paul;
Vaz, Alfin D. N.;
Vaz, Winchil L. C.;
Vieira, Otilia V.

Publication type:

Article

Exogenous Ether Lipids Predominantly Target Mitochondria.

Published in:

PLoS ONE, 2012, v. 7, n. 2, p. 1, doi. 10.1371/journal.pone.0031342

By:

Kuerschner, Lars;
Richter, Doris;
Hannibal-Bach, Hans Kristian;
Gaebler, Anne;
Shevchenko, Andrej;
Ejsing, Christer S.;
Thiele, Christoph

Publication type:

Article

LipidXplorer: A Software for Consensual Cross-Platform Lipidomics.

Published in:

2012

By:

Herzog, Ronny;
Schuhmann, Kai;
Schwudke, Dominik;
Sampaio, Julio L.;
Bornstein, Stefan R.;
Schroeder, Michael;
Shevchenko, Andrej

Publication type:

Product Review

Altered Desaturation and Elongation of Fatty Acids in Hormone-Sensitive Lipase Null Mice.

Published in:

PLoS ONE, 2011, v. 6, n. 6, p. 1, doi. 10.1371/journal.pone.0021603

By:

Fernandez, Céline;
Schuhmann, Kai;
Herzog, Ronny;
Fielding, Barbara;
Frayn, Keith;
Shevchenko, Andrej;
James, Peter;
Holm, Cecilia;
Ström, Kristoffer

Publication type:

Article

Xenopus Meiotic Microtubule-Associated Interactome.

Published in:

2010

By:

Gache, Vincent;
Waridel, Patrice;
Winter, Christof;
Juhem, Aurelie;
Schroeder, Michael;
Shevchenko, Andrej;
Popov, Andrei V.

Publication type:

Case Study

Top-Down Lipidomics Reveals Ether Lipid Deficiency in Blood Plasma of Hypertensive Patients.

Published in:

PLoS ONE, 2009, v. 4, n. 7, p. 1, doi. 10.1371/journal.pone.0006261

By:

Graessler, Juergen;
Schwudke, Dominik;
Schwarz, Peter E. H.;
Herzog, Ronny;
Shevchenko, Andrej;
Bornstein, Stefan R.

Publication type:

Article

Effects of diet and development on the Drosophila lipidome.

Published in:

Molecular Systems Biology, 2012, v. 8, n. 1, p. 1, doi. 10.1038/msb.2012.29

By:

Carvalho, Maria;
Sampaio, Julio L;
Palm, Wilhelm;
Brankatschk, Marko;
Eaton, Suzanne;
Shevchenko, Andrej

Publication type:

Article

RNAi in murine hepatocytes: the agony of choice-a study of the influence of lipid-based transfection reagents on hepatocyte metabolism.

Published in:

Archives of Toxicology, 2015, v. 89, n. 9, p. 1579, doi. 10.1007/s00204-015-1571-0

By:

Böttger, Jan;
Arnold, Katrin;
Thiel, Carlo;
Rennert, Christiane;
Aleithe, Susanne;
Hofmann, Ute;
Vlaic, Sebastian;
Sales, Susanne;
Shevchenko, Andrej;
Matz-Soja, Madlen

Publication type:

Article

Ontogenetic variations in the venom proteome of the Amazonian snake Bothrops atrox.

Published in:

Proteome Science, 2006, v. 4, p. 1, doi. 10.1186/1477-5956-4-11

By:

Guércio, Rafael A. P.;
Shevchenko, Anna;
Shevchenko, Andrej;
López-Lozano, Jorge L.;
Paba, Jaime;
Sousa, Marcelo V.;
Ricart, Carlos A. O.

Publication type:

Article

Steroid Hormone Signaling Is Essential for Pheromone Production and Oenocyte Survival.

Published in:

PLoS Genetics, 2016, v. 12, n. 6, p. 1, doi. 10.1371/journal.pgen.1006126

By:

Chiang, Yin Ning;
Tan, Kah Junn;
Chung, Henry;
Lavrynenko, Oksana;
Shevchenko, Andrej;
Yew, Joanne Y.

Publication type:

Article

Sequence similarity-driven proteomics in organisms with unknown genomes by LC-MS/MS and automated de novo sequencing.

Published in:

Proteomics, 2007, v. 7, n. 14, p. 2318, doi. 10.1002/pmic.200700003

By:

Waridel, Patrice;
Frank, Ari;
Thomas, Henrik;
Surendranath, Vineeth;
Sunyaev, Shamil;
Pevzner, Pavel;
Shevchenko, Andrej

Publication type:

Article

Thermostable trypsin conjugates for high-throughput proteomics: synthesis and performance evaluation.

Published in:

Proteomics, 2006, v. 6, n. 10, p. 2959, doi. 10.1002/pmic.200500576

By:

Marek Šebela;
Tat'ána Štosová;
Jan Havliš;
Natalie Wielsch;
Henrik Thomas;
Zbyněk Zdráhal;
Andrej Shevchenko

Publication type:

Article

Error-tolerant EST database searches by tandem mass spectrometry and multiTag software.

Published in:

Proteomics, 2005, v. 5, n. 16, p. 4118, doi. 10.1002/pmic.200401262

By:

Adam 4;J. Liska;
Shamil Sunyaev;
Ignat 4;N. Shilov;
Dan 4;A. Schaeffer;
Andrej Shevchenko

Publication type:

Article

Homology-based functional proteomics by mass spectrometry: Application to the Xenopus microtubule-associated proteome.

Published in:

Proteomics, 2004, v. 4, n. 9, p. 2707, doi. 10.1002/pmic.200300813

By:

Adam J. Liska;
Andrei V. Popov;
Shamil Sunyaev;
Peg Coughlin;
Bianca Habermann;
Anna Shevchenko;
Peer Bork;
Eric Karsenti;
Andrej Shevchenko

Publication type:

Article

Expanding the organismal scope of proteomics: Cross-species protein identification by mass spectrometry and its implications.

Published in:

Proteomics, 2003, v. 3, n. 1, p. 19, doi. 10.1002/pmic.200390004

By:

Liska, Adam J.;
Shevchenko, Andrej

Publication type:

Article

Endocrinology. Purification of a candidate gonadotrophin surge attenuating factor from human follicular fluid.

Published in:

Human Reproduction, 1999, v. 14, n. 6, p. 1449, doi. 10.1093/humrep/14.6.1449

By:

Pappa, Aglaia;
Seferiadis, Konstantin;
Fotsis, Theodore;
Shevchenko, Andrej;
Marselos, Marios;
Tsolas, Orestes;
E.Messinis, Ioannis

Publication type:

Article

Changes in Visceral Adipose Tissue Plasma Membrane Lipid Composition in Old Rats Are Associated With Adipocyte Hypertrophy With Aging.

Published in:

2018

By:

Bonzón-Kulichenko, Elena;
Moltó, Eduardo;
Pintado, Cristina;
Fernández, Alejandro;
Arribas, Carmen;
Schwudke, Dominik;
Gallardo, Nilda;
Shevchenko, Andrej;
Andrés, Antonio

Publication type:

journal article

Enlightening discriminative network functional modules behind Principal Component Analysis separation in differential-omic science studies.

Published in:

Scientific Reports, 2017, p. 43946, doi. 10.1038/srep43946

By:

Ciucci, Sara;
Ge, Yan;
Durán, Claudio;
Palladini, Alessandra;
Jiménez-Jiménez, Víctor;
Martínez-Sánchez, Luisa María;
Wang, Yuting;
Sales, Susanne;
Shevchenko, Andrej;
Poser, Steven W.;
Herbig, Maik;
Otto, Oliver;
Androutsellis-Theotokis, Andreas;
Guck, Jochen;
Gerl, Mathias J.;
Cannistraci, Carlo Vittorio

Publication type:

Article

Gender, Contraceptives and Individual Metabolic Predisposition Shape a Healthy Plasma Lipidome.

Published in:

Scientific Reports, 2016, p. 27710, doi. 10.1038/srep27710

By:

Sales, Susanne;
Graessler, Juergen;
Ciucci, Sara;
Al-Atrib, Rania;
Vihervaara, Terhi;
Schuhmann, Kai;
Kauhanen, Dimple;
Sysi-Aho, Marko;
Bornstein, Stefan R.;
Bickle, Marc;
Cannistraci, Carlo V.;
Ekroos, Kim;
Shevchenko, Andrej

Publication type:

Article

Lipid Discovery by Combinatorial Screening and Untargeted LC-MS/MS.

Published in:

Scientific Reports, 2016, p. 27920, doi. 10.1038/srep27920

By:

Bilgin, Mesut;
Born, Petra;
Fezza, Filomena;
Heimes, Michael;
Mastrangelo, Nicolina;
Wagner, Nicolai;
Schultz, Carsten;
Maccarrone, Mauro;
Eaton, Suzanne;
Nadler, André;
Wilm, Matthias;
Shevchenko, Andrej

Publication type:

Article

The Plasmodiophora brassicae genome reveals insights in its life cycle and ancestry of chitin synthases.

Published in:

Scientific Reports, 2015, p. 11153, doi. 10.1038/srep11153

By:

Schwelm, Arne;
Fogelqvist, Johan;
Knaust, Andrea;
Jülke, Sabine;
Lilja, Tua;
Bonilla-Rosso, German;
Karlsson, Magnus;
Shevchenko, Andrej;
Dhandapani, Vignesh;
Choi, Su Ryun;
Kim, Hong Gi;
Park, Ju Young;
Lim, Yong Pyo;
Ludwig-Müller, Jutta;
Dixelius, Christina

Publication type:

Article

Open sesame: Identification of sesame oil and oil soot ink in organic deposits of Tang Dynasty lamps from Astana necropolis in China.

Published in:

PLoS ONE, 2017, v. 12, n. 2, p. 1, doi. 10.1371/journal.pone.0158636

By:

Shevchenko, Anna;
Yang, Yimin;
Knaust, Andrea;
Verbavatz, Jean-Marc;
Mai, Huijuan;
Wang, Bo;
Wang, Changsui;
Shevchenko, Andrej

Publication type:

Article

A Genome-Scale DNA Repair RNAi Screen Identifies SPG48 as a Novel Gene Associated with Hereditary Spastic Paraplegia.

Published in:

PLoS Biology, 2010, v. 8, n. 6, p. 1, doi. 10.1371/journal.pbio.1000408

By:

Slabicki, Mikolaj;
Theis, Mirko;
Krastev, Dragomir B.;
Samsonov, Sergey;
Mundwiller, Emeline;
Junqueira, Magno;
Paszkowski-Rogacz, Maciej;
Teyra, Joan;
Heninger, Anne-Kristin;
Poser, Ina;
Prieur, Fabienne;
Truchetto, Jérémy;
Confavreux, Christian;
Marelli, Cécilia;
Durr, Alexandra;
Camdessanche, Jean Philippe;
Brice, Alexis;
Shevchenko, Andrej;
Pisabarro, M. Teresa;
Stevanin, Giovanni

Publication type:

Article

Femtomole sequencing of proteins from polyacrylamide gels by nano-electrospray mass spectrometry.

Published in:

Nature, 1996, v. 379, n. 6564, p. 466, doi. 10.1038/379466a0

By:

Wilm, Matthias;
Shevchenko, Andrej

Publication type:

Article

Vitamin A Deficiency Alters the Phototransduction Machinery and Distinct Non-Vision-Specific Pathways in the Drosophila Eye Proteome.

Published in:

Biomolecules (2218-273X), 2022, v. 12, n. 8, p. 1083, doi. 10.3390/biom12081083

By:

Kumar, Mukesh;
Has, Canan;
Lam-Kamath, Khanh;
Ayciriex, Sophie;
Dewett, Deepshe;
Bashir, Mhamed;
Poupault, Clara;
Schuhmann, Kai;
Knittelfelder, Oskar;
Raghuraman, Bharath Kumar;
Ahrends, Robert;
Rister, Jens;
Shevchenko, Andrej

Publication type:

Article

Role for Rif1 in the checkpoint response to damaged DNA in Xenopus egg extracts.

Published in:

Cell Cycle, 2012, v. 11, n. 6, p. 1183, doi. 10.4161/cc.11.6.19636

By:

Kumar, Sanjay;
Hae Yong Yoo;
Kumagai, Akiko;
Shevchenko, Anna;
Shevchenko, Andrej;
Dunphy, William G.

Publication type:

Article

Prospore membrane formation linked to the leading edge protein (LEP) coat assembly.

Published in:

EMBO Journal, 2001, v. 20, n. 24, p. 6946, doi. 10.1093/emboj/20.24.6946

By:

Moreno‐Borchart, Alexandra C.;
Strasser, Katrin;
Finkbeiner, Martin G;
Shevchenko, Anna;
Shevchenko, Andrej;
Knop, Michael

Publication type:

Article

Prospore membrane formation linked to the leading edge protein (LEP) coat assembly.

Published in:

EMBO Journal, 2001, v. 20, n. 24, p. 6946, doi. 10.1093/emboj/20.24.6946

By:

Moreno-Borchart, Alexandra C.;
Strasser, Katrin;
Finkbeiner, Martin G.;
Shevchenko, Anna;
Shevchenko, Andrej;
Knop, Michael

Publication type:

Article

The budding yeast proteins Spc24p and Spc25p interact with Ndc80p and Nuf2p at the kinetochore and are important for kinetochore clustering and checkpoint control.

Published in:

EMBO Journal, 2001, v. 20, n. 4, p. 777, doi. 10.1093/emboj/20.4.777

By:

Janke, Carsten;
Ortiz, Jennifer;
Lechner, Johannes;
Shevchenko, Anna;
Shevchenko, Andrej;
M.Magiera, Maria;
Schramm, Carolin;
Schiebel, Elmar

Publication type:

Article

Euplotes telomerase contains an La motif protein produced by apparent translational frameshifting.

Published in:

EMBO Journal, 2000, v. 19, n. 22, p. 6230, doi. 10.1093/emboj/19.22.6230

By:

Aigner, Stefan;
Lingner, Joachinm;
Goodrich, Karen J.;
Grosshans, Cheryl A.;
Shevchenko, Andrej;
Mann, Matthias;
Cech, Thomas R.

Publication type:

Article

The Bbp1p-Mps2p complex connects the SPB to the nuclear envelope and is essential for SPB duplication.

Published in:

EMBO Journal, 2000, v. 19, n. 3, p. 421, doi. 10.1093/emboj/19.3.421

By:

Schramm, Carolin;
Elliott, Sarah;
Shevhenko, Anna;
Shevchenko, Andrej;
Schiebel, Elmar

Publication type:

Article

Compartmentation of protein folding in vivo: sequestration of non-native polypeptide by the chaperonin-GimC system.

Published in:

EMBO Journal, 1999, v. 18, n. 1, p. 75, doi. 10.1093/emboj/18.1.75

By:

Siegers, Katja;
Waldmann, Thomas;
Leroux, Michel R.;
Grein, Katrin;
Shevchenko, Andrej;
Schiebel, Elmar;
Hartl, F. Ulrich

Publication type:

Article