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Peptide fusion improves prime editing efficiency.
Published in:
Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-31270-y
By:
- Velimirovic, Minja;
- Zanetti, Larissa C.;
- Shen, Max W.;
- Fife, James D.;
- Lin, Lin;
- Cha, Minsun;
- Akinci, Ersin;
- Barnum, Danielle;
- Yu, Tian;
- Sherwood, Richard I.
Publication type:
Article
A multi-parametric flow cytometric assay to analyze DNA–protein interactions.
Published in:
Nucleic Acids Research, 2013, v. 41, n. 2, p. e38, doi. 10.1093/nar/gks1034
By:
- Arbab, Mandana;
- Mahony, Shaun;
- Cho, Hyunjii;
- Chick, Joel M.;
- Rolfe, P. Alexander;
- van Hoff, John Peter;
- Morris, Viveca W.S.;
- Gygi, Steven P.;
- Maas, Richard L.;
- Gifford, David K.;
- Sherwood, Richard I.
Publication type:
Article
Small molecule inhibition of ATM kinase increases CRISPR-Cas9 1-bp insertion frequency.
Published in:
Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-25415-8
By:
- Bermudez-Cabrera, Heysol C.;
- Culbertson, Sannie;
- Barkal, Sammy;
- Holmes, Benjamin;
- Shen, Max W.;
- Zhang, Sophia;
- Gifford, David K.;
- Sherwood, Richard I.
Publication type:
Article
High-throughput mapping of regulatory DNA.
Published in:
Nature Biotechnology, 2016, v. 34, n. 2, p. 167, doi. 10.1038/nbt.3468
By:
- Rajagopal, Nisha;
- Srinivasan, Sharanya;
- Kooshesh, Kameron;
- Guo, Yuchun;
- Edwards, Matthew D;
- Banerjee, Budhaditya;
- Syed, Tahin;
- Emons, Bart J M;
- Gifford, David K;
- Sherwood, Richard I
Publication type:
Article
Discovery of directional and nondirectional pioneer transcription factors by modeling DNase profile magnitude and shape.
Published in:
Nature Biotechnology, 2014, v. 32, n. 2, p. 171, doi. 10.1038/nbt.2798
By:
- Sherwood, Richard I;
- Hashimoto, Tatsunori;
- O'Donnell, Charles W;
- Lewis, Sophia;
- Barkal, Amira A;
- van Hoff, John Peter;
- Karun, Vivek;
- Jaakkola, Tommi;
- Gifford, David K
Publication type:
Article
An Integrated Model of Multiple-Condition ChIP-Seq Data Reveals Predeterminants of Cdx2 Binding.
Published in:
PLoS Computational Biology, 2014, v. 10, n. 3, p. 1, doi. 10.1371/journal.pcbi.1003501
By:
- Mahony, Shaun;
- Edwards, Matthew D.;
- Mazzoni, Esteban O.;
- Sherwood, Richard I.;
- Kakumanu, Akshay;
- Morrison, Carolyn A.;
- Wichterle, Hynek;
- Gifford, David K.
Publication type:
Article
A CD47-associated super-enhancer links pro-inflammatory signalling to CD47 upregulation in breast cancer.
Published in:
Nature Communications, 2017, v. 8, n. 4, p. 14802, doi. 10.1038/ncomms14802
By:
- Betancur, Paola A.;
- Abraham, Brian J.;
- Yiu, Ying Y.;
- Willingham, Stephen B.;
- Khameneh, Farnaz;
- Zarnegar, Mark;
- Kuo, Angera H.;
- McKenna, Kelly;
- Kojima, Yoko;
- Leeper, Nicholas J.;
- Ho, Po;
- Gip, Phung;
- Swigut, Tomek;
- Sherwood, Richard I.;
- Clarke, Michael F.;
- Somlo, George;
- Young, Richard A.;
- Weissman, Irving L.
Publication type:
Article
Detection of gene cis-regulatory element perturbations in single-cell transcriptomes.
Published in:
PLoS Computational Biology, 2021, v. 17, n. 3, p. 1, doi. 10.1371/journal.pcbi.1008789
By:
- Yeo, Grace Hui Ting;
- Juez, Oscar;
- Chen, Qing;
- Banerjee, Budhaditya;
- Chu, Lendy;
- Shen, Max W.;
- Sabry, May;
- Logister, Ive;
- Sherwood, Richard I.;
- Gifford, David K.
Publication type:
Article
Machine learning based CRISPR gRNA design for therapeutic exon skipping.
Published in:
PLoS Computational Biology, 2021, v. 17, n. 1, p. 1, doi. 10.1371/journal.pcbi.1008605
By:
- Louie, Wilson;
- Shen, Max W.;
- Tahiry, Zakir;
- Zhang, Sophia;
- Worstell, Daniel;
- Cassa, Christopher A.;
- Sherwood, Richard I.;
- Gifford, David K.
Publication type:
Article
Transcriptional dynamics of endodermal organ formation.
Published in:
Developmental Dynamics, 2009, v. 238, n. 1, p. 29, doi. 10.1002/dvdy.21810
By:
- Sherwood, Richard I.;
- Chen, Tzong-Yang Albert;
- Melton, Douglas A.
Publication type:
Article
Genetic targeting of the endoderm with claudin-6.
Published in:
Developmental Dynamics, 2008, v. 237, n. 2, p. 504, doi. 10.1002/dvdy.21437
By:
- Anderson, William J.;
- Zhou, Qiao;
- Alcalde, Victor;
- Kaneko, Osamu F.;
- Blank, Leah J.;
- Sherwood, Richard I.;
- Guseh, J. Sawalla;
- Rajagopal, Jayaraj;
- Melton, Douglas A.
Publication type:
Article
Cas9 Functionally Opens Chromatin.
Published in:
PLoS ONE, 2016, v. 11, n. 3, p. 1, doi. 10.1371/journal.pone.0152683
By:
- Barkal, Amira A.;
- Srinivasan, Sharanya;
- Hashimoto, Tatsunori;
- Gifford, David K.;
- Sherwood, Richard I.
Publication type:
Article

Found: 12