Works by Shatkay, Hagit

Results: 30

Protein (multi-)location prediction: utilizing interdependencies via a generative model.

Published in:

Bioinformatics, 2015, v. 31, n. 12, p. i365, doi. 10.1093/bioinformatics/btv264

By:

Simha, Ramanuja;
Briesemeister, Sebastian;
Kohlbacher, Oliver;
Shatkay, Hagit

Publication type:

Article

Summary of the BioLINK SIG 2013 meeting at ISMB/ECCB 2013.

Published in:

2015

By:

Verspoor, Karin;
Shatkay, Hagit;
Hirschman, Lynette;
Blaschke, Christian;
Valencia, Alfonso

Publication type:

Proceeding

An integrative scoring system for ranking SNPs by their potential deleterious effects.

Published in:

Bioinformatics, 2009, v. 25, n. 8, p. 1048, doi. 10.1093/bioinformatics/btp103

By:

Phil Hyoun Lee;
Hagit Shatkay

Publication type:

Article

Multi-dimensional classification of biomedical text: Toward automated, practical provision of high-utility text to diverse users.

Published in:

Bioinformatics, 2008, v. 24, n. 18, p. 2086, doi. 10.1093/bioinformatics/btn381

By:

Hagit Shatkay;
Fengxia Pan;
Andrey Rzhetsky;
W. John Wilbur

Publication type:

Article

Combining multi-species genomic data for microRNA identification using a Naïve Bayes classifier.

Published in:

Bioinformatics, 2006, v. 22, n. 11, p. 1325, doi. 10.1093/bioinformatics/btl094

By:

Malik Yousef;
Michael Nebozhyn;
Hagit Shatkay;
Stathis Kanterakis;
Louise C. Showe;
Michael K. Showe

Publication type:

Article

BI‐LAVA: Biocuration With Hierarchical Image Labelling Through Active Learning and Visual Analytics.

Published in:

Computer Graphics Forum, 2025, v. 44, n. 1, p. 1, doi. 10.1111/cgf.15261

By:

Trelles, Juan;
Wentzel, Andrew;
Berrios, William;
Shatkay, Hagit;
Marai, G. Elisabeta

Publication type:

Article

Stochastic Sequential Modeling: Toward Improved Prostate Cancer Diagnosis Through Temporal-Ultrasound.

Published in:

Annals of Biomedical Engineering, 2021, v. 49, n. 2, p. 573, doi. 10.1007/s10439-020-02585-y

By:

Nahlawi, Layan;
Imani, Farhad;
Gaed, Mena;
Gomez, Jose A.;
Moussa, Madeleine;
Gibson, Eli;
Fenster, Aaron;
Ward, Aaron;
Abolmaesumi, Purang;
Mousavi, Parvin;
Shatkay, Hagit

Publication type:

Article

Correction to: Stochastic Sequential Modeling: Toward Improved Prostate Cancer Diagnosis Through Temporal-Ultrasound.

Published in:

2020

By:

Nahlawi, Layan;
Imani, Farhad;
Gaed, Mena;
Gomez, Jose A.;
Moussa, Madeleine;
Gibson, Eli;
Fenster, Aaron;
Ward, Aaron;
Abolmaesumi, Purang;
Mousavi, Parvin;
Shatkay, Hagit

Publication type:

Correction Notice

Toward ECG-based analysis of hypertrophic cardiomyopathy: a novel ECG segmentation method for handling abnormalities.

Published in:

2022

By:

Nezamabadi, Kasra;
Mayfield, Jacob;
Li, Pengyuan;
Greenland, Gabriela V;
Rodriguez, Sebastian;
Simsek, Bahadir;
Mousavi, Parvin;
Shatkay, Hagit;
Abraham, M Roselle

Publication type:

journal article

Enhancing biomedical search interfaces with images.

Published in:

Bioinformatics Advances, 2023, v. 3, n. 1, p. 1, doi. 10.1093/bioadv/vbad095

By:

Trabucco, Juan Trelles;
Arighi, Cecilia;
Shatkay, Hagit;
Marai, G Elisabeta

Publication type:

Article

Hairpins in bookstacks: Information retrieval from biomedical text.

Published in:

Briefings in Bioinformatics, 2005, v. 6, n. 3, p. 222, doi. 10.1093/bib/6.3.222

By:

Shatkay, Hagit

Publication type:

Article

Reproductive phasiRNAs in grasses are compositionally distinct from other classes of small RNAs.

Published in:

New Phytologist, 2018, v. 220, n. 3, p. 851, doi. 10.1111/nph.15349

By:

Patel, Parth;
Mathioni, Sandra;
Kakrana, Atul;
Shatkay, Hagit;
Meyers, Blake C.

Publication type:

Article

Translational drug–interaction corpus.

Published in:

Database: The Journal of Biological Databases & Curation, 2022, v. 2022, p. 1, doi. 10.1093/database/baac031

By:

Zhang, Shijun;
Wu, Hengyi;
Wang, Lei;
Zhang, Gongbo;
Rocha, Luis M;
Shatkay, Hagit;
Li, Lang

Publication type:

Article

Integrating image caption information into biomedical document classification in support of biocuration.

Published in:

Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baaa024

By:

Jiang, Xiangying;
Li, Pengyuan;
Kadin, James;
Blake, Judith A;
Ringwald, Martin;
Shatkay, Hagit

Publication type:

Article

An effective biomedical document classification scheme in support of biocuration: addressing class imbalance.

Published in:

Database: The Journal of Biological Databases & Curation, 2019, v. 2019, p. N.PAG, doi. 10.1093/database/baz045

By:

Jiang, Xiangying;
Ringwald, Martin;
Blake, Judith A;
Arighi, Cecilia;
Zhang, Gongbo;
Shatkay, Hagit

Publication type:

Article

Effective biomedical document classification for identifying publications relevant to the mouse Gene Expression Database (GXD).

Published in:

Database: The Journal of Biological Databases & Curation, 2017, v. 2017, n. 1, p. 1, doi. 10.1093/database/bax017

By:

Xiangying Jiang;
Ringwald, Martin;
Blake, Judith;
Shatkay, Hagit

Publication type:

Article

Translational Knowledge Discovery Between Drug Interactions and Pharmacogenetics.

Published in:

Clinical Pharmacology & Therapeutics, 2020, v. 107, n. 4, p. 886, doi. 10.1002/cpt.1745

By:

Wu, Heng‐Yi;
Shendre, Aditi;
Zhang, Shijun;
Zhang, Pengyue;
Wang, Lei;
Zeruesenay, Desta;
Rocha, Luis M.;
Shatkay, Hagit;
Quinney, Sara K.;
Ning, Xia;
Li, Lang

Publication type:

Article

How to Get the Most out of Your Curation Effort.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 5, p. 1, doi. 10.1371/journal.pcbi.1000391

By:

Rzhetsky, Andrey;
Shatkay, Hagit;
Wilbur, W. John

Publication type:

Article

Chronic Kidney Disease stratification using office visit records: Handling data imbalance via hierarchical meta-classification.

Published in:

2018

By:

Bhattacharya, Moumita;
Jurkovitz, Claudine;
Shatkay, Hagit

Publication type:

journal article

Protein Function Prediction using Text-based Features extracted from the Biomedical Literature: The CAFA Challenge.

Published in:

BMC Bioinformatics, 2013, v. 14, n. S3, p. 1, doi. 10.1186/1471-2105-14-S3-S14

By:

Wong, Andrew;
Shatkay, Hagit

Publication type:

Article

Correction: A linear classifier based on entity recognition tools and a statistical approach to method extraction in the protein-protein interaction literature.

Published in:

2012

By:

Loureno, Anlia;
Conover, Michael;
Wong, Andrea;
Nematzadeh, Azadeh;
Pan, Fengxia;
Shatkay, Hagit;
Rocha, Luis M

Publication type:

Correction Notice

A linear classifier based on entity recognition tools and a statistical approach to method extraction in the protein-protein interaction literature.

Published in:

BMC Bioinformatics, 2011, v. 12, n. Suppl 8, p. 1, doi. 10.1186/1471-2105-12-S8-S12

By:

Lourenço, Anália;
Conover, Michael;
Wong, Andrew;
Nematzadeh, Azadeh;
Pan, Fengxia;
Shatkay, Hagit;
Luis M Rocha

Publication type:

Article

Functionally informative tag SNP selection using a pareto-optimal approach: playing the game of life.

Published in:

BMC Bioinformatics, 2009, v. 10, p. 1, doi. 10.1186/1471-2105-10-S13-O5

By:

Phil Hyoun Lee;
Jae-Yoon Jung;
Hagit Shatkay

Publication type:

Article

Ranking single nucleotide polymorphisms by potential deleterious effects.

Published in:

BMC Bioinformatics, 2008, v. 9, p. 1, doi. 10.1186/1471-2105-9-S10-O6

By:

Phil Hyoun Lee;
Shatkay, Hagit

Publication type:

Article

New directions in biomedical text annotation: definitions, guidelines and corpus construction.

Published in:

BMC Bioinformatics, 2006, v. 7, p. 356, doi. 10.1186/1471-2105-7-356

By:

Wilbur, W John;
Rzhetsky, Andrey;
Shatkay, Hagit

Publication type:

Article

Corrigendum to: Utilizing image and caption information for biomedical document classification.

Published in:

Bioinformatics, 2021, v. 37, n. 19, p. 3389, doi. 10.1093/bioinformatics/btab568

By:

Li, Pengyuan;
Jiang, Xiangying;
Zhang, Gongbo;
Trabucco, Juan Trelles;
Raciti, Daniela;
Smith, Cynthia;
Ringwald, Martin;
Marai, G Elisabeta;
Arighi, Cecilia;
Shatkay, Hagit

Publication type:

Article

Utilizing image and caption information for biomedical document classification.

Published in:

Bioinformatics, 2021, v. 37, p. i468, doi. 10.1093/bioinformatics/btab331

By:

Li, Pengyuan;
Jiang, Xiangying;
Zhang, Gongbo;
Trabucco, Juan Trelles;
Raciti, Daniela;
Smith, Cynthia;
Ringwald, Martin;
Marai, G Elisabeta;
Arighi, Cecilia;
Shatkay, Hagit

Publication type:

Article

Figure and caption extraction from biomedical documents.

Published in:

Bioinformatics, 2019, v. 35, n. 21, p. 4381, doi. 10.1093/bioinformatics/btz228

By:

Li, Pengyuan;
Jiang, Xiangying;
Shatkay, Hagit

Publication type:

Article

Compound image segmentation of published biomedical figures.

Published in:

Bioinformatics, 2018, v. 34, n. 7, p. 1192, doi. 10.1093/bioinformatics/btx611

By:

Li, Pengyuan;
Jiang, Xiangying;
Kambhamettu, Chandra;
Shatkay, Hagit

Publication type:

Article

F-SNP: computationally predicted functional SNPs for disease association studies.

Published in:

Nucleic Acids Research, 2008, v. 36, p. D820

By:

Lee, Phil Hyoun;
Shatkay, Hagit

Publication type:

Article