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Assessment of various standard fish diets on gut microbiome of platyfish Xiphophorus maculatus.
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- Journal of Experimental Zoology Part B: Molecular & Developmental Evolution, 2024, v. 342, n. 3, p. 271, doi. 10.1002/jez.b.23218
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- Article
Sulforaphane and Sulforaphane‐Nitrile Metabolism in Humans Following Broccoli Sprout Consumption: Inter‐individual Variation, Association with Gut Microbiome Composition, and Differential Bioactivity.
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- Molecular Nutrition & Food Research, 2024, v. 68, n. 4, p. 1, doi. 10.1002/mnfr.202300286
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- Article
Microbiome ecological memory and responses to repeated marine heatwaves clarify variation in coral bleaching and mortality.
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- Global Change Biology, 2024, v. 30, n. 1, p. 1, doi. 10.1111/gcb.17088
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- Article
Identification of rare microbial colonizers of plastic materials incubated in a coral reef environment.
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- Frontiers in Microbiology, 2023, p. 1, doi. 10.3389/fmicb.2023.1259014
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- Article
Behavioral and Cognitive Performance Following Exposure to Second-Hand Smoke (SHS) from Tobacco Products Associated with Oxidative-Stress-Induced DNA Damage and Repair and Disruption of the Gut Microbiome.
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- Genes, 2023, v. 14, n. 9, p. 1702, doi. 10.3390/genes14091702
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- Article
Early detection of Pseudocapillaria tomentosa by qPCR in four lines of zebrafish, Danio rerio (Hamilton 1882).
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- Journal of Fish Diseases, 2023, v. 46, n. 6, p. 619, doi. 10.1111/jfd.13773
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- Article
Best practice for wildlife gut microbiome research: A comprehensive review of methodology for 16S rRNA gene investigations.
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- Frontiers in Microbiology, 2023, v. 14, p. 1, doi. 10.3389/fmicb.2023.1092216
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- Article
Interplay between Cruciferous Vegetables and the Gut Microbiome: A Multi-Omic Approach.
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- Nutrients, 2023, v. 15, n. 1, p. 42, doi. 10.3390/nu15010042
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Dietary and lifestyle associations with microbiome diversity.
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- Gut Pathogens, 2022, v. 14, n. 1, p. 1, doi. 10.1186/s13099-022-00525-w
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Age and micronutrient effects on the microbiome in a mouse model of zinc depletion and supplementation.
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- PLoS ONE, 2022, v. 17, n. 12, p. 1, doi. 10.1371/journal.pone.0275352
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- Article
A Non-Randomized Trial Investigating the Impact of Brown Rice Consumption on Gut Microbiota, Attention, and Short-Term Working Memory in Thai School-Aged Children.
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- Nutrients, 2022, v. 14, n. 23, p. 5176, doi. 10.3390/nu14235176
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- Article
Chronic clinical signs of upper respiratory tract disease associate with gut and respiratory microbiomes in a cohort of domestic felines.
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- PLoS ONE, 2022, v. 17, n. 12, p. 1, doi. 10.1371/journal.pone.0268730
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- Article
Experimental methods modestly impact interpretation of the effect of environmental exposures on the larval zebrafish gut microbiome.
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- Scientific Reports, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41598-022-18532-x
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- Article
Gut Microbial Composition of Pacific Salmonids Differs across Oregon River Basins and Hatchery Ancestry.
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- Microorganisms, 2022, v. 10, n. 5, p. 933, doi. 10.3390/microorganisms10050933
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The fecal microbiota of Thai school-aged children associated with demographic factors and diet.
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- PeerJ, 2022, p. 1, doi. 10.7717/peerj.13325
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- Article
Fecal Implants From App <sup> NL – G – F </sup> and App <sup> NL – G – F / E 4</sup> Donor Mice Sufficient to Induce Behavioral Phenotypes in Germ-Free Mice.
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- Frontiers in Behavioral Neuroscience, 2022, v. 16, p. 1, doi. 10.3389/fnbeh.2022.791128
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- Article
Xanthohumol Requires the Intestinal Microbiota to Improve Glucose Metabolism in Diet‐Induced Obese Mice.
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- Molecular Nutrition & Food Research, 2021, v. 65, n. 21, p. 1, doi. 10.1002/mnfr.202100389
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- Article
Composition of the Gut Microbiome Influences Production of Sulforaphane-Nitrile and Iberin-Nitrile from Glucosinolates in Broccoli Sprouts.
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- Nutrients, 2021, v. 13, n. 9, p. 3013, doi. 10.3390/nu13093013
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- Article
Tetrahydroxanthohumol, a xanthohumol derivative, attenuates high-fat diet-induced hepatic steatosis by antagonizing PPARγ.
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- eLife, 2021, p. 1, doi. 10.7554/eLife.66398
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- Article
Diet and gut microbiome enterotype are associated at the population level in African buffalo.
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- Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-22510-8
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- Article
Effects of zinc status on age-related T cell dysfunction and chronic inflammation.
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- BioMetals, 2021, v. 34, n. 2, p. 291, doi. 10.1007/s10534-020-00279-5
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- Article
Gossypol Exhibited Higher Detrimental Effect on Ruminal Fermentation Characteristics of Low-Forage in Comparison with High-Forage Mixed Feeds.
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- Toxics, 2021, v. 9, n. 3, p. 51, doi. 10.3390/toxics9030051
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Integrated analysis of behavioral, epigenetic, and gut microbiome analyses in AppNL-G-F, AppNL-F, and wild type mice.
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- Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-83851-4
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- Article
Transkingdom interactions between Lactobacilli and hepatic mitochondria attenuate western diet-induced diabetes.
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- Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-020-20313-x
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- Article
Phylogenetic Integration Reveals the Zebrafish Core Microbiome and Its Sensitivity to Environmental Exposures.
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- Toxics, 2021, v. 9, n. 1, p. 10, doi. 10.3390/toxics9010010
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- Article
Retrospective analysis of the Zebrafish International Resource Center diagnostic data links Pseudocapillaria tomentosa to intestinal neoplasms in zebrafish Danio rerio (Hamilton 1822).
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- Journal of Fish Diseases, 2020, v. 43, n. 11, p. 1459, doi. 10.1111/jfd.13233
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- Article
Effects of Six Sequential Charged Particle Beams on Behavioral and Cognitive Performance in B6D2F1 Female and Male Mice.
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- Frontiers in Physiology, 2020, v. 11, p. N.PAG, doi. 10.3389/fphys.2020.00959
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Experimental metatranscriptomics reveals the costs and benefits of dissolved organic matter photo‐alteration for freshwater microbes.
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- Environmental Microbiology, 2020, v. 22, n. 8, p. 3505, doi. 10.1111/1462-2920.15121
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- Article
Bighorn sheep gut microbiomes associate with genetic and spatial structure across a metapopulation.
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- Scientific Reports, 2020, v. 10, n. 1, p. 1, doi. 10.1038/s41598-020-63401-0
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- Article
Germ-Free Swiss Webster Mice on a High-Fat Diet Develop Obesity, Hyperglycemia, and Dyslipidemia.
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- Microorganisms, 2020, v. 8, n. 4, p. 520, doi. 10.3390/microorganisms8040520
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- Article
Pan-tissue transcriptome analysis of long noncoding RNAs in the American beaver Castor canadensis.
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- BMC Genomics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12864-019-6432-4
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- Article
Front Cover: Improvements in Metabolic Syndrome by Xanthohumol Derivatives Are Linked to Altered Gut Microbiota and Bile Acid Metabolism.
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- Molecular Nutrition & Food Research, 2020, v. 64, n. 1, p. N.PAG, doi. 10.1002/mnfr.202070003
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- Article
Improvements in Metabolic Syndrome by Xanthohumol Derivatives Are Linked to Altered Gut Microbiota and Bile Acid Metabolism.
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- Molecular Nutrition & Food Research, 2020, v. 64, n. 1, p. N.PAG, doi. 10.1002/mnfr.201900789
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Microbiome Multi-Omics Network Analysis: Statistical Considerations, Limitations, and Opportunities.
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- Frontiers in Genetics, 2019, v. 10, p. 1, doi. 10.3389/fgene.2019.00995
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Further evaluation of the efficacy of emamectin benzoate for treating Pseudocapillaria tomentosa (Dujardin 1843) in zebrafish Danio rerio (Hamilton 1822).
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- Journal of Fish Diseases, 2019, v. 42, n. 10, p. 1351, doi. 10.1111/jfd.13057
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- Article
Combined Genomic, Transcriptomic, Proteomic, and Physiological Characterization of the Growth of Pecoramyces sp. F1 in Monoculture and Co-culture With a Syntrophic Methanogen.
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- Frontiers in Microbiology, 2019, p. N.PAG, doi. 10.3389/fmicb.2019.00435
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- Article
A longitudinal assessment of host-microbe-parasite interactions resolves the zebrafish gut microbiome's link to Pseudocapillaria tomentosa infection and pathology.
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- Microbiome, 2019, v. 7, n. 1, p. N.PAG, doi. 10.1186/s40168-019-0622-9
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The gut microbiome correlates with conspecific aggression in a small population of rescued dogs (Canis familiaris).
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- PeerJ, 2019, p. 1, doi. 10.7717/peerj.6103
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- Article
Effects of Sub-Chronic MPTP Exposure on Behavioral and Cognitive Performance and the Microbiome of Wild-Type and mGlu8 Knockout Female and Male Mice.
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- Frontiers in Behavioral Neuroscience, 2018, p. N.PAG, doi. 10.3389/fnbeh.2018.00140
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- Article
Allelic Variation in a Single Genomic Region Alters the Microbiome of the Snail Biomphalaria glabrata.
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- Journal of Heredity, 2018, v. 109, n. 5, p. 604, doi. 10.1093/jhered/esy014
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- Article
Increasing dietary nitrate has no effect on cancellous bone loss or fecal microbiome in ovariectomized rats.
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- Molecular Nutrition & Food Research, 2017, v. 61, n. 5, p. n/a, doi. 10.1002/mnfr.201600372
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Metacoder: An R package for visualization and manipulation of community taxonomic diversity data.
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- PLoS Computational Biology, 2017, v. 13, n. 2, p. 1, doi. 10.1371/journal.pcbi.1005404
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- Article
Triclosan Exposure Is Associated with Rapid Restructuring of the Microbiome in Adult Zebrafish.
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- PLoS ONE, 2016, v. 11, n. 5, p. 1, doi. 10.1371/journal.pone.0154632
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Automated and Accurate Estimation of Gene Family Abundance from Shotgun Metagenomes.
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- PLoS Computational Biology, 2015, v. 11, n. 10, p. 1, doi. 10.1371/journal.pcbi.1004573
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Metagenome sequence of E laphomyces granulatus from sporocarp tissue reveals Ascomycota ectomycorrhizal fingerprints of genome expansion and a Proteobacteria-rich microbiome.
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- Environmental Microbiology, 2015, v. 17, n. 8, p. 2952, doi. 10.1111/1462-2920.12840
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Profile Hidden Markov Models for the Detection of Viruses within Metagenomic Sequence Data.
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- PLoS ONE, 2014, v. 9, n. 8, p. 1, doi. 10.1371/journal.pone.0105067
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An introduction to the analysis of shotgun metagenomic data.
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- Frontiers in Plant Science, 2014, v. 5, p. 1, doi. 10.3389/fpls.2014.00209
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- Article
Exome capture from saliva produces high quality genomic and metagenomic data.
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- BMC Genomics, 2014, v. 15, n. 1, p. 1, doi. 10.1186/1471-2164-15-262
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- Article
A Taxonomic Signature of Obesity in the Microbiome? Getting to the Guts of the Matter.
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- PLoS ONE, 2014, v. 9, n. 1, p. 1, doi. 10.1371/journal.pone.0084689
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- Article
Global marine bacterial diversity peaks at high latitudes in winter.
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- ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2013, v. 7, n. 9, p. 1669, doi. 10.1038/ismej.2013.37
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- Article