Works by Shamovsky, Veronica

Results: 14

Reactome enhanced pathway visualization.

Published in:

Bioinformatics, 2017, v. 33, n. 21, p. 3461, doi. 10.1093/bioinformatics/btx441

By:

Sidiropoulos, Konstantinos;
Viteri, Guilherme;
Sevilla, Cristoffer;
Jupe, Steve;
Webber, Marissa;
Orlic-Milacic, Marija;
Jassal, Bijay;
May, Bruce;
Shamovsky, Veronica;
Duenas, Corina;
Rothfels, Karen;
Matthews, Lisa;
Heeyeon Song;
Stein, Lincoln;
Haw, Robin;
D'eustachio, Peter;
Peipei Ping;
Hermjakob, Henning;
Fabregat, Antonio

Publication type:

Article

Using the Reactome Database.

Published in:

Current Protocols, 2023, v. 3, n. 4, p. 1, doi. 10.1002/cpz1.722

By:

Rothfels, Karen;
Milacic, Marija;
Matthews, Lisa;
Haw, Robin;
Sevilla, Cristoffer;
Gillespie, Marc;
Stephan, Ralf;
Gong, Chuqiao;
Ragueneau, Eliot;
May, Bruce;
Shamovsky, Veronica;
Wright, Adam;
Weiser, Joel;
Beavers, Deidre;
Conley, Patrick;
Tiwari, Krishna;
Jassal, Bijay;
Griss, Johannes;
Senff‐Ribeiro, Andrea;
Brunson, Timothy

Publication type:

Article

Correction: Toll-Like Receptor Signaling in Vertebrates: Testing the Integration of Protein, Complex, and Pathway Data in the Protein Ontology Framework.

Published in:

PLoS ONE, 2015, v. 10, n. 6, p. 1, doi. 10.1371/journal.pone.0131148

By:

Arighi, Cecilia;
Shamovsky, Veronica;
Masci, Anna Maria;
Ruttenberg, Alan;
Smith, Barry;
Natale, Darren A.;
Wu, Cathy;
D’Eustachio, Peter

Publication type:

Article

Toll-Like Receptor Signaling in Vertebrates: Testing the Integration of Protein, Complex, and Pathway Data in the Protein Ontology Framework.

Published in:

PLoS ONE, 2015, v. 10, n. 4, p. 1, doi. 10.1371/journal.pone.0122978

By:

Arighi, Cecilia;
Shamovsky, Veronica;
Masci, Anna Maria;
Ruttenberg, Alan;
Smith, Barry;
Natale, Darren A.;
Wu, Cathy;
D’Eustachio, Peter

Publication type:

Article

Pathway-based, reaction-specific annotation of disease variants for elucidation of molecular phenotypes.

Published in:

Database: The Journal of Biological Databases & Curation, 2024, v. 2024, p. 1, doi. 10.1093/database/baae031

By:

Orlic-Milacic, Marija;
Rothfels, Karen;
Matthews, Lisa;
Wright, Adam;
Jassal, Bijay;
Shamovsky, Veronica;
Trinh, Quang;
Gillespie, Marc E;
Sevilla, Cristoffer;
Tiwari, Krishna;
Ragueneau, Eliot;
Gong, Chuqiao;
Stephan, Ralf;
May, Bruce;
Haw, Robin;
Weiser, Joel;
Beavers, Deidre;
Conley, Patrick;
Hermjakob, Henning;
Stein, Lincoln D

Publication type:

Article

Human and chicken TLR pathways: manual curation and computer-based orthology analysis.

Published in:

Mammalian Genome, 2011, v. 22, n. 1/2, p. 130, doi. 10.1007/s00335-010-9296-0

By:

Gillespie, Marc;
Shamovsky, Veronica;
D'Eustachio, Peter

Publication type:

Article

The Reactome Pathway Knowledgebase 2024.

Published in:

Nucleic Acids Research, 2024, v. 52, n. D1, p. D672, doi. 10.1093/nar/gkad1025

By:

Milacic, Marija;
Beavers, Deidre;
Conley, Patrick;
Gong, Chuqiao;
Gillespie, Marc;
Griss, Johannes;
Haw, Robin;
Jassal, Bijay;
Matthews, Lisa;
May, Bruce;
Petryszak, Robert;
Ragueneau, Eliot;
Rothfels, Karen;
Sevilla, Cristoffer;
Shamovsky, Veronica;
Stephan, Ralf;
Tiwari, Krishna;
Varusai, Thawfeek;
Weiser, Joel;
Wright, Adam

Publication type:

Article

reactome pathway knowledgebase 2022.

Published in:

Nucleic Acids Research, 2022, v. 50, n. D1, p. D687, doi. 10.1093/nar/gkab1028

By:

Gillespie, Marc;
Jassal, Bijay;
Stephan, Ralf;
Milacic, Marija;
Rothfels, Karen;
Senff-Ribeiro, Andrea;
Griss, Johannes;
Sevilla, Cristoffer;
Matthews, Lisa;
Gong, Chuqiao;
Deng, Chuan;
Varusai, Thawfeek;
Ragueneau, Eliot;
Haider, Yusra;
May, Bruce;
Shamovsky, Veronica;
Weiser, Joel;
Brunson, Timothy;
Sanati, Nasim;
Beckman, Liam

Publication type:

Article

The reactome pathway knowledgebase.

Published in:

Nucleic Acids Research, 2020, v. 48, n. D1, p. D498, doi. 10.1093/nar/gkz1031

By:

Jassal, Bijay;
Matthews, Lisa;
Viteri, Guilherme;
Gong, Chuqiao;
Lorente, Pascual;
Fabregat, Antonio;
Sidiropoulos, Konstantinos;
Cook, Justin;
Gillespie, Marc;
Haw, Robin;
Loney, Fred;
May, Bruce;
Milacic, Marija;
Rothfels, Karen;
Sevilla, Cristoffer;
Shamovsky, Veronica;
Shorser, Solomon;
Varusai, Thawfeek;
Weiser, Joel;
Wu, Guanming

Publication type:

Article

Protein Ontology (PRO): enhancing and scaling up the representation of protein entities.

Published in:

Nucleic Acids Research, 2017, v. 45, n. D1, p. D339, doi. 10.1093/nar/gkw1075

By:

Natale, Darren A.;
Arighi, Cecilia N.;
Blake, Judith A.;
Bona, Jonathan;
Chuming Chen;
Sheng-Chih Chen;
Christie, Karen R.;
Cowart, Julie;
D’Eustachio, Peter;
Diehl, Alexander D.;
Drabkin, Harold J.;
Duncan, William D.;
Huang, Hongzhan;
Ren, Jia;
Ross, Karen;
Ruttenberg, Alan;
Shamovsky, Veronica;
Smith, Barry;
Qinghua Wang;
Jian Zhang

Publication type:

Article

The Reactome pathway Knowledgebase.

Published in:

Nucleic Acids Research, 2016, v. 44, p. D481, doi. 10.1093/nar/gkv1351

By:

Fabregat, Antonio;
Sidiropoulos, Konstantinos;
Garapati, Phani;
Gillespie, Marc;
Hausmann, Kerstin;
Haw, Robin;
Jassal, Bijay;
Jupe, Steven;
Korninger, Florian;
McKay, Sheldon;
Matthews, Lisa;
May, Bruce;
Milacic, Marija;
Rothfels, Karen;
Shamovsky, Veronica;
Webber, Marissa;
Weiser, Joel;
Williams, Mark;
Guanming Wu;
Stein, Lincoln

Publication type:

Article

Protein Ontology: a controlled structured network of protein entities.

Published in:

Nucleic Acids Research, 2014, v. 42, n. D1, p. D415, doi. 10.1093/nar/gkt1173

By:

Natale, Darren A.;
Arighi, Cecilia N.;
Blake, Judith A.;
Bult, Carol J.;
Christie, Karen R.;
Cowart, Julie;
D’Eustachio, Peter;
Diehl, Alexander D.;
Drabkin, Harold J.;
Helfer, Olivia;
Huang, Hongzhan;
Masci, Anna Maria;
Ren, Jia;
Roberts, Natalia V.;
Ross, Karen;
Ruttenberg, Alan;
Shamovsky, Veronica;
Smith, Barry;
Yerramalla, Meher Shruti;
Zhang, Jian

Publication type:

Article

The Reactome pathway knowledgebase.

Published in:

Nucleic Acids Research, 2014, v. 42, n. D1, p. D472, doi. 10.1093/nar/gkt1102

By:

Croft, David;
Mundo, Antonio Fabregat;
Haw, Robin;
Milacic, Marija;
Weiser, Joel;
Wu, Guanming;
Caudy, Michael;
Garapati, Phani;
Gillespie, Marc;
Kamdar, Maulik R.;
Jassal, Bijay;
Jupe, Steven;
Matthews, Lisa;
May, Bruce;
Palatnik, Stanislav;
Rothfels, Karen;
Shamovsky, Veronica;
Song, Heeyeon;
Williams, Mark;
Birney, Ewan

Publication type:

Article

Reactome: a database of reactions, pathways and biological processes.

Published in:

Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D691, doi. 10.1093/nar/gkq1018

By:

Croft, David;
O’Kelly, Gavin;
Wu, Guanming;
Haw, Robin;
Gillespie, Marc;
Matthews, Lisa;
Caudy, Michael;
Garapati, Phani;
Gopinath, Gopal;
Jassal, Bijay;
Jupe, Steven;
Kalatskaya, Irina;
Mahajan, Shahana;
May, Bruce;
Ndegwa, Nelson;
Schmidt, Esther;
Shamovsky, Veronica;
Yung, Christina;
Birney, Ewan;
Hermjakob, Henning

Publication type:

Article