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Tracking microbial colonization in fecal microbiota transplantation experiments via genome-resolved metagenomics.
Published in:
Microbiome, 2017, v. 5, p. 1, doi. 10.1186/s40168-017-0270-x
By:
- Lee, Sonny T. M.;
- Kahn, Stacy A.;
- Delmont, Tom O.;
- Shaiber, Alon;
- Esen, Özcan C.;
- Hubert, Nathaniel A.;
- Morrison, Hilary G.;
- Antonopoulos, Dionysios A.;
- Rubin, David T.;
- Eren, A. Murat
Publication type:
Article
Shotgun transcriptome, spatial omics, and isothermal profiling of SARS-CoV-2 infection reveals unique host responses, viral diversification, and drug interactions.
Published in:
Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-21361-7
By:
- Butler, Daniel;
- Mozsary, Christopher;
- Meydan, Cem;
- Foox, Jonathan;
- Rosiene, Joel;
- Shaiber, Alon;
- Danko, David;
- Afshinnekoo, Ebrahim;
- MacKay, Matthew;
- Sedlazeck, Fritz J.;
- Ivanov, Nikolay A.;
- Sierra, Maria;
- Pohle, Diana;
- Zietz, Michael;
- Gisladottir, Undina;
- Ramlall, Vijendra;
- Sholle, Evan T.;
- Schenck, Edward J.;
- Westover, Craig D.;
- Hassan, Ciaran
Publication type:
Article
Functional and genetic markers of niche partitioning among enigmatic members of the human oral microbiome.
Published in:
Genome Biology, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s13059-020-02195-w
By:
- Shaiber, Alon;
- Willis, Amy D.;
- Delmont, Tom O.;
- Roux, Simon;
- Chen, Lin-Xing;
- Schmid, Abigail C.;
- Yousef, Mahmoud;
- Watson, Andrea R.;
- Lolans, Karen;
- Esen, Özcan C.;
- Lee, Sonny T. M.;
- Downey, Nora;
- Morrison, Hilary G.;
- Dewhirst, Floyd E.;
- Mark Welch, Jessica L.;
- Eren, A. Murat
Publication type:
Article
Author Correction: The Wolbachia mobilome in Culex pipiens includes a putative plasmid.
Published in:
2019
By:
- Reveillaud, Julie;
- Bordenstein, Sarah R.;
- Cruaud, Corinne;
- Shaiber, Alon;
- Esen, Özcan C.;
- Weill, Mylène;
- Makoundou, Patrick;
- Lolans, Karen;
- Watson, Andrea R.;
- Rakotoarivony, Ignace;
- Bordenstein, Seth R.;
- Eren, A. Murat
Publication type:
Correction Notice
The Wolbachia mobilome in Culex pipiens includes a putative plasmid.
Published in:
Nature Communications, 2019, v. 10, n. 1, p. 1, doi. 10.1038/s41467-019-08973-w
By:
- Reveillaud, Julie;
- Bordenstein, Sarah R.;
- Cruaud, Corinne;
- Shaiber, Alon;
- Esen, Özcan C.;
- Weill, Mylène;
- Makoundou, Patrick;
- Lolans, Karen;
- Watson, Andrea R.;
- Rakotoarivony, Ignace;
- Bordenstein, Seth R.;
- Eren, A. Murat
Publication type:
Article
Metabolic independence drives gut microbial colonization and resilience in health and disease.
Published in:
Genome Biology, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s13059-023-02924-x
By:
- Watson, Andrea R.;
- Füssel, Jessika;
- Veseli, Iva;
- DeLongchamp, Johanna Zaal;
- Silva, Marisela;
- Trigodet, Florian;
- Lolans, Karen;
- Shaiber, Alon;
- Fogarty, Emily;
- Runde, Joseph M.;
- Quince, Christopher;
- Yu, Michael K.;
- Söylev, Arda;
- Morrison, Hilary G.;
- Lee, Sonny T. M.;
- Kao, Dina;
- Rubin, David T.;
- Jabri, Bana;
- Louie, Thomas;
- Eren, A. Murat
Publication type:
Article
Gut microbes contribute to variation in solid organ transplant outcomes in mice.
Published in:
Microbiome, 2018, v. 6, n. 1, p. N.PAG, doi. 10.1186/s40168-018-0474-8
By:
- McIntosh, Christine M.;
- Chen, Luqiu;
- Shaiber, Alon;
- Eren, A. Murat;
- Alegre, Maria-Luisa
Publication type:
Article
High molecular weight DNA extraction strategies for long‐read sequencing of complex metagenomes.
Published in:
Molecular Ecology Resources, 2022, v. 22, n. 5, p. 1786, doi. 10.1111/1755-0998.13588
By:
- Trigodet, Florian;
- Lolans, Karen;
- Fogarty, Emily;
- Shaiber, Alon;
- Morrison, Hilary G.;
- Barreiro, Luis;
- Jabri, Bana;
- Eren, A. Murat
Publication type:
Article
Transient Suppression of Bacterial Populations Associated with Gut Health is Critical in Success of Exclusive Enteral Nutrition for Children with Crohn's Disease.
Published in:
Journal of Crohn's & Colitis, 2023, v. 17, n. 7, p. 1103, doi. 10.1093/ecco-jcc/jjad031
By:
- Runde, Joseph;
- Veseli, Iva;
- Fogarty, Emily C;
- Watson, Andrea R;
- Clayssen, Quentin;
- Yosef, Mahmoud;
- Shaiber, Alon;
- Verma, Ritu;
- Quince, Christopher;
- Gerasimidis, Konstantinos;
- Rubin, David T;
- Eren, A Murat
Publication type:
Article

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