Works by Shahbaba, Babak

Results: 39

A scalable reinforcement learning framework inspired by hippocampal memory mechanisms for efficient contextual and sequential decision making.

Published in:

Scientific Reports, 2025, v. 15, n. 1, p. 1, doi. 10.1038/s41598-025-10586-x

By:

Poursiami, Hamed;
Moshruba, Ayana;
Cooper, Keiland W.;
Gobin, Derek;
Kaiser, Md Abdullah-Al;
Singh, Ankur;
Noor, Rouhan;
Shahbaba, Babak;
Jaiswal, Akhilesh;
Fortin, Norbert J.;
Parsa, Maryam

Publication type:

Article

Predicting postmortem neuropathology of Alzheimer's disease and related dementias using widely accessible clinical data.

Published in:

Alzheimer's & Dementia: The Journal of the Alzheimer's Association, 2024, v. 20, n. S2, p. 1, doi. 10.1002/alz.092688

By:

Ren, Yueqi;
Shahbaba, Babak;
Stark, Craig EL

Publication type:

Article

Association of Congenital and Acquired Cardiovascular Conditions With COVID-19 Severity Among Pediatric Patients in the US.

Published in:

JAMA Network Open, 2022, v. 5, n. 5, p. e2211967, doi. 10.1001/jamanetworkopen.2022.11967

By:

Ehwerhemuepha, Louis;
Roth, Bradley;
Patel, Anita K.;
Heutlinger, Olivia;
Heffernan, Carly;
Arrieta, Antonio C.;
Sanger, Terence;
Cooper, Dan M.;
Shahbaba, Babak;
Chang, Anthony C.;
Feaster, William;
Taraman, Sharief;
Morizono, Hiroki;
Marano, Rachel

Publication type:

Article

Hippocampal ensembles represent sequential relationships among an extended sequence of nonspatial events.

Published in:

Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-28057-6

By:

Shahbaba, Babak;
Li, Lingge;
Agostinelli, Forest;
Saraf, Mansi;
Cooper, Keiland W.;
Haghverdian, Derenik;
Elias, Gabriel A.;
Baldi, Pierre;
Fortin, Norbert J.

Publication type:

Article

Contribution to the Discussion of the Paper 'Geodesic Monte Carlo on Embedded Manifolds'.

Published in:

Scandinavian Journal of Statistics, 2014, v. 41, n. 1, p. 14, doi. 10.1111/sjos.12065

By:

Shahbaba, Babak;
Lan, Shiwei;
Streets, Jeffrey

Publication type:

Article

Prostatectomy‐based validation of combined urine and plasma test for predicting high grade prostate cancer.

Published in:

Prostate, 2018, v. 78, n. 4, p. 294, doi. 10.1002/pros.23473

By:

Albitar, Maher;
Ma, Wanlong;
Lund, Lars;
Shahbaba, Babak;
Uchio, Edward;
Feddersen, Søren;
Moylan, Donald;
Wojno, Kirk;
Shore, Neal

Publication type:

Article

What time is it? Deep learning approaches for circadian rhythms.

Published in:

Bioinformatics, 2016, v. 32, n. 12, p. i8, doi. 10.1093/bioinformatics/btw243

By:

Agostinelli, Forest;
Ceglia, Nicholas;
Shahbaba, Babak;
Sassone-Corsi, Paolo;
Baldi, Pierre

Publication type:

Article

An efficient Bayesian inference framework for coalescent-based nonparametric phylodynamics.

Published in:

Bioinformatics, 2015, v. 31, n. 20, p. 3282, doi. 10.1093/bioinformatics/btv378

By:

Shiwei Lan;
Palacios, Julia A.;
Karcher, Michael;
Minin, Vladimir N.;
Shahbaba, Babak

Publication type:

Article

A Bayesian nonparametric method for model evaluation: application to genetic studies.

Published in:

Journal of Nonparametric Statistics, 2009, v. 21, n. 3, p. 379, doi. 10.1080/10485250802613558

By:

Shahbaba, Babak;
Gentles, Andrew J.;
Beyene, Joseph;
Plevritis, Sylvia K.;
Greenwood, Celia M. T.

Publication type:

Article

EVOLUTIONARY STATE-SPACE MODEL AND ITS APPLICATION TO TIME-FREQUENCY ANALYSIS OF LOCAL FIELD POTENTIALS.

Published in:

Statistica Sinica, 2020, v. 30, n. 3, p. 1561, doi. 10.5705/ss.202017.0420

By:

Xu Gao;
Weining Shen;
Shahbaba, Babak;
Fortin, Norbert J.;
Ombao, Hernando

Publication type:

Article

Bayesian nonparametric variable selection as an exploratory tool for discovering differentially expressed genes.

Published in:

Statistics in Medicine, 2013, v. 32, n. 12, p. 2114, doi. 10.1002/sim.5680

By:

Shahbaba, Babak;
Johnson, Wesley O.

Publication type:

Article

A pathway analysis method for genome-wide association studies.

Published in:

Statistics in Medicine, 2012, v. 31, n. 10, p. 988, doi. 10.1002/sim.4477

By:

Shahbaba, Babak;
Shachaf, Catherine M.;
Yu, Zhaoxia

Publication type:

Article

Discovering Hidden Structures Using Mixture Models: Application to Nonlinear Time Series Processes.

Published in:

Studies in Nonlinear Dynamics & Econometrics, 2009, v. 13, n. 2, p. 1, doi. 10.2202/1558-3708.1609

By:

Shahbaba, Babak

Publication type:

Article

Modeling Binary Time Series Using Gaussian Processes with Application to Predicting Sleep States.

Published in:

Journal of Classification, 2018, v. 35, n. 3, p. 549, doi. 10.1007/s00357-018-9268-8

By:

Gao, Xu;
Shahbaba, Babak;
Ombao, Hernando

Publication type:

Article

Neural network gradient Hamiltonian Monte Carlo.

Published in:

Computational Statistics, 2019, v. 34, n. 1, p. 281, doi. 10.1007/s00180-018-00861-z

By:

Li, Lingge;
Holbrook, Andrew;
Shahbaba, Babak;
Baldi, Pierre

Publication type:

Article

Precomputing strategy for Hamiltonian Monte Carlo method based on regularity in parameter space.

Published in:

Computational Statistics, 2017, v. 32, n. 1, p. 253, doi. 10.1007/s00180-016-0683-1

By:

Zhang, Cheng;
Zhao, Hongkai;
Shahbaba, Babak

Publication type:

Article

Genetic Factors, Brain Atrophy, and Response to Rehabilitation Therapy After Stroke.

Published in:

Neurorehabilitation & Neural Repair, 2022, v. 36, n. 2, p. 131, doi. 10.1177/15459683211062899

By:

Cramer, Steven C.;
See, Jill;
Liu, Brent;
Edwardson, Matthew;
Wang, Ximing;
Radom-Aizik, Shlomit;
Haddad, Fadia;
Shahbaba, Babak;
Wolf, Steven L.;
Dromerick, Alexander W.;
Winstein, Carolee J.

Publication type:

Article

A Bayesian supervised dual-dimensionality reduction model for simultaneous decoding of LFP and spike train signals.

Published in:

Stat, 2017, v. 6, n. 1, p. 53, doi. 10.1002/sta4.137

By:

Holbrook, Andrew;
Vandenberg‐Rodes, Alexander;
Fortin, Norbert;
Shahbaba, Babak

Publication type:

Article

Geodesic Lagrangian Monte Carlo over the space of positive definite matrices: with application to Bayesian spectral density estimation.

Published in:

Journal of Statistical Computation & Simulation, 2018, v. 88, n. 5, p. 982, doi. 10.1080/00949655.2017.1416470

By:

Holbrook, Andrew;
Lan, Shiwei;
Vandenberg-Rodes, Alexander;
Shahbaba, Babak

Publication type:

Article

Neural function, injury, and stroke subtype predict treatment gains after stroke.

Published in:

Annals of Neurology, 2015, v. 77, n. 1, p. 132, doi. 10.1002/ana.24309

By:

Burke Quinlan, Erin;
Dodakian, Lucy;
See, Jill;
McKenzie, Alison;
Le, Vu;
Wojnowicz, Mike;
Shahbaba, Babak;
Cramer, Steven C.

Publication type:

Article

Bayesian Causality.

Published in:

American Statistician, 2020, v. 74, n. 3, p. 249, doi. 10.1080/00031305.2019.1647876

By:

Baldi, Pierre;
Shahbaba, Babak

Publication type:

Article

Fundamentals of Statistical Experimental Design and Analysis.

Published in:

2017

By:

Shahbaba, Babak

Publication type:

Book Review

Nonlinear Models Using Dirichlet Process Mixtures.

Published in:

Journal of Machine Learning Research, 2009, v. 10, n. 8, p. 1829

By:

Shahbaba, Babak;
Neal, Radford

Publication type:

Article

Spatiotemporal dynamics of pial collateral blood flow following permanent middle cerebral artery occlusion in a rat model of sensory-based protection: a Doppler optical coherence tomography study.

Published in:

Neurophotonics, 2019, v. 6, n. 4, p. 1, doi. 10.1117/1.NPh.6.4.045012

By:

Jiang Zhu;
Hancock, Aneeka M.;
Li Qi;
Telkmann, Klaus;
Shahbaba, Babak;
Zhongping Chen;
Frostig, Ron D.

Publication type:

Article

Neonatal Outcomes after Maternal Biomarker-Guided Preterm Birth Intervention: The AVERT PRETERM Trial.

Published in:

Diagnostics (2075-4418), 2024, v. 14, n. 14, p. 1462, doi. 10.3390/diagnostics14141462

By:

Hoffman, Matthew K.;
Kitto, Carrie;
Zhang, Zugui;
Shi, Jing;
Walker, Michael G.;
Shahbaba, Babak;
Ruhstaller, Kelly

Publication type:

Article

Bayesian gene set analysis for identifying significant biological pathways.

Published in:

Journal of the Royal Statistical Society: Series C (Applied Statistics), 2011, v. 60, n. 4, p. 541, doi. 10.1111/j.1467-9876.2011.00765.x

By:

Shahbaba, Babak;
Tibshirani, Robert;
Shachaf, Catherine M.;
Plevritis, Sylvia K.

Publication type:

Article

Projecting nuisance flooding in a warming climate using generalized linear models and Gaussian processes.

Published in:

Journal of Geophysical Research. Oceans, 2016, v. 121, n. 11, p. 8008, doi. 10.1002/2016JC012084

By:

Vandenberg-Rodes, Alexander;
Moftakhari, Hamed R.;
AghaKouchak, Amir;
Shahbaba, Babak;
Sanders, Brett F.;
Matthew, Richard A.

Publication type:

Article

Maternal Folate Concentration in Early Pregnancy and Newborn Telomere Length.

Published in:

Annals of Nutrition & Metabolism, 2015, v. 66, n. 4, p. 202, doi. 10.1159/000381925

By:

Entringer, Sonja;
Epel, Elissa S.;
Lin, Jue;
Blackburn, Elizabeth H.;
Buss, Claudia;
Shahbaba, Babak;
Gillen, Daniel L.;
Venkataramanan, Raman;
Simhan, Hyagriv N.;
Wadhwa, Pathik D.

Publication type:

Article

Genetic Variation in the Human Brain Dopamine System Influences Motor Learning and Its Modulation by L-Dopa.

Published in:

PLoS ONE, 2013, v. 8, n. 4, p. 1, doi. 10.1371/journal.pone.0061197

By:

Pearson-Fuhrhop, Kristin M.;
Minton, Brian;
Acevedo, Daniel;
Shahbaba, Babak;
Cramer, Steven C.

Publication type:

Article

Improving clinical efficiency in screening for cognitive impairment due to Alzheimer's.

Published in:

Alzheimer's & Dementia: Diagnosis, Assessment & Disease Monitoring, 2023, v. 15, n. 4, p. 1, doi. 10.1002/dad2.12494

By:

Ren, Yueqi;
Shahbaba, Babak;
Stark, Craig E. L.

Publication type:

Article

Flexible Bayesian Dynamic Modeling of Correlation and Covariance Matrices.

Published in:

Bayesian Analysis, 2020, v. 15, n. 4, p. 1199, doi. 10.1214/19-BA1173

By:

Shiwei Lan;
Holbrook, Andrew;
Elias, Gabriel A.;
Fortin, Norbert J.;
Ombao, Hernando;
Shahbaba, Babak

Publication type:

Article

Variational Hamiltonian Monte Carlo via Score Matching.

Published in:

Bayesian Analysis, 2018, v. 13, n. 2, p. 485, doi. 10.1214/17-BA1060

By:

Cheng Zhang;
Shahbaba, Babak;
Hongkai Zhao

Publication type:

Article

A Model-Agnostic Graph Neural Network for Integrating Local and Global Information.

Published in:

Journal of the American Statistical Association, 2025, v. 120, n. 550, p. 1225, doi. 10.1080/01621459.2024.2404668

By:

Zhou, Wenzhuo;
Qu, Annie;
Cooper, Keiland W.;
Fortin, Norbert;
Shahbaba, Babak

Publication type:

Article

Handbook of Discrete-Valued Time Series.

Published in:

2017

By:

Shahbaba, Babak

Publication type:

Book Review

A Dynamic Bayesian Model for Characterizing Cross-Neuronal Interactions During Decision-Making.

Published in:

Journal of the American Statistical Association, 2016, v. 111, n. 514, p. 459, doi. 10.1080/01621459.2015.1116988

By:

Zhou, Bo;
Moorman, David E.;
Behseta, Sam;
Ombao, Hernando;
Shahbaba, Babak

Publication type:

Article

Using multimodal, low‐cost data to efficiently identify clinical subgroups and classify Alzheimer's diagnosis.

Published in:

Alzheimer's & Dementia: The Journal of the Alzheimer's Association, 2023, v. 19, p. 1, doi. 10.1002/alz.080159

By:

Ren, Yueqi;
Shahbaba, Babak;
Stark, Craig E.L.

Publication type:

Article

Hierarchical, multiclass prediction of Alzheimer's clinical diagnosis using imputed, multimodal NACC data.

Published in:

Alzheimer's & Dementia: The Journal of the Alzheimer's Association, 2022, v. 18, n. 5, p. 1, doi. 10.1002/alz.066698

By:

Ren, Yueqi;
Shahbaba, Babak;
Stark, Craig E.

Publication type:

Article

Markov Chain Monte Carlo from Lagrangian Dynamics.

Published in:

Journal of Computational & Graphical Statistics, 2015, v. 24, n. 2, p. 357, doi. 10.1080/10618600.2014.902764

By:

Lan, Shiwei;
Stathopoulos, Vasileios;
Shahbaba, Babak;
Girolami, Mark

Publication type:

Article

A Hierarchical Modeling Approach to Data Analysis and Study Design in a Multi-site Experimental fMRI Study.

Published in:

Psychometrika, 2013, v. 78, n. 2, p. 260, doi. 10.1007/s11336-012-9298-9

By:

Zhou, Bo;
Konstorum, Anna;
Duong, Thao;
Tieu, Kinh;
Wells, William;
Brown, Gregory;
Stern, Hal;
Shahbaba, Babak

Publication type:

Article