Works by Shah, Premal

Results: 29

The development and evaluation of a multidisciplinary, specialist adult ADHD resource team: Can we have your attention, please?

Published in:

Clinical Psychology Forum, 2017, n. 295, p. 7, doi. 10.53841/bpscpf.2017.1.295.7

By:

Poveda, Blanca;
McGuire, Julie;
King, Rachel;
Watson, Fiona;
Shah, Premal

Publication type:

Article

Preprocessing of rotamers for protein design calculations.

Published in:

Journal of Computational Chemistry, 2004, v. 25, n. 14, p. 1797, doi. 10.1002/jcc.20097

By:

Shah, Premal S.;
Hom, Geoffrey K.;
Mayo, Stephen L.

Publication type:

Article

Is Thermosensing Property of RNA Thermometers Unique?

Published in:

PLoS ONE, 2010, v. 5, n. 7, p. 1, doi. 10.1371/journal.pone.0011308

By:

Shah, Premal;
Gilchrist, Michael A.

Publication type:

Article

IMP1 Enhances Extracellular Vesicle Secretion in a Transformation‐Dependent Manner.

Published in:

FASEB Journal, 2021, v. 35, p. N.PAG, doi. 10.1096/fasebj.2021.35.S1.04356

By:

Andres, Sarah;
Kuhn, Madeline;
Preet, Ranjan;
Blucher, Aurora;
Favate, John;
Das, Sukanya;
Liang, Shun;
Parham, Louis;
Chatterji, Priya;
Williams, Kathy;
Molugu, Sudheer;
Zhang, Wei;
Yang, Jiegang;
Hamilton, Kathryn;
Shah, Premal;
Mills, Gordon;
Dixon, Dan;
Rustgi, Anil

Publication type:

Article

Reply to: Potential contribution of PEP carboxykinase-dependent malate dismutation to the hypoxia response in C. elegans.

Published in:

Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-39511-4

By:

Vora, Mehul;
Pyonteck, Stephanie M.;
Popovitchenko, Tatiana;
Matlack, Tarmie L.;
Prashar, Aparna;
Kane, Nanci S.;
Favate, John;
Shah, Premal;
Rongo, Christopher

Publication type:

Article

The hypoxia response pathway promotes PEP carboxykinase and gluconeogenesis in C. elegans.

Published in:

Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-33849-x

By:

Vora, Mehul;
Pyonteck, Stephanie M.;
Popovitchenko, Tatiana;
Matlack, Tarmie L.;
Prashar, Aparna;
Kane, Nanci S.;
Favate, John;
Shah, Premal;
Rongo, Christopher

Publication type:

Article

Implementation of Nanopore sequencing as a pragmatic workflow for copy number variant confirmation in the clinic.

Published in:

Journal of Translational Medicine, 2023, v. 21, n. 1, p. 1, doi. 10.1186/s12967-023-04243-y

By:

Greer, Stephanie U.;
Botello, Jacquelin;
Hongo, Donna;
Levy, Brynn;
Shah, Premal;
Rabinowitz, Matthew;
Miller, Danny E.;
Im, Kate;
Kumar, Akash

Publication type:

Article

Epistasis and the Dynamics of Reversion in Molecular Evolution.

Published in:

Genetics, 2016, v. 203, n. 3, p. 1335, doi. 10.1534/genetics.116.188961

By:

McCandlish, David M.;
Shah, Premal;
Plotkin, Joshua B.

Publication type:

Article

Measuring and Delecting Molecular Adaptation in Codon Usage Against Nonsense Errors During Protein Translation.

Published in:

Genetics, 2009, v. 183, n. 4, p. 1493, doi. 10.1534/genetics.109.108209

By:

Gilchrist, Michael A.;
Shah, Premal;
Zaretzki, Russell

Publication type:

Article

EVIDENCE FOR REPEATED LOSS OF SELECTIVE CONSTRAINT IN RHODOPSIN OF AMBLYOPSID CAVEFISHES (TELEOSTEI: AMBLYOPSIDAE).

Published in:

Evolution, 2013, v. 67, n. 3, p. 732, doi. 10.1111/j.1558-5646.2012.01822.x

By:

Niemiller, Matthew L.;
Fitzpatrick, Benjamin M.;
Shah, Premal;
Schmitz, Lars;
Near, Thomas J.

Publication type:

Article

A PARAMETRIC METHOD FOR ASSESSING DIVERSIFICATION-RATE VARIATION IN PHYLOGENETIC TREES.

Published in:

Evolution, 2013, v. 67, n. 2, p. 368, doi. 10.1111/j.1558-5646.2012.01791.x

By:

Shah, Premal;
Fitzpatrick, Benjamin M.;
Fordyce, James A.

Publication type:

Article

Antidepressants for mothers: What are we prescribing?

Published in:

Scottish Medical Journal, 2011, v. 56, n. 2, p. 94, doi. 10.1258/smj.2011.011034

By:

Kean, Laura Jane;
Hamilton, Jane;
Shah, Premal

Publication type:

Article

Posttranscriptional regulation of colonic epithelial repair by RNA binding protein IMP1/IGF2BP1.

Published in:

EMBO Reports, 2021, v. 22, n. 8, p. 1, doi. 10.15252/embr.202153324

By:

Chatterji, Priya;
Williams, Patrick A;
Whelan, Kelly A;
Samper, Fernando C;
Andres, Sarah F;
Simon, Lauren A;
Parham, Louis R;
Mizuno, Rei;
Lundsmith, Emma T;
Lee, David SM;
Liang, Shun;
Wijeratne, HR Sagara;
Marti, Stefanie;
Chau, Lillian;
Giroux, Veronique;
Wilkins, Benjamin J;
Wu, Gary D;
Shah, Premal;
Tartaglia, Gian G;
Hamilton, Kathryn E

Publication type:

Article

Posttranscriptional regulation of colonic epithelial repair by RNA binding protein IMP1/IGF2BP1.

Published in:

EMBO Reports, 2019, v. 20, n. 6, p. 1, doi. 10.15252/embr.201847074

By:

Chatterji, Priya;
Williams, Patrick A;
Whelan, Kelly A;
Samper, Fernando C;
Andres, Sarah F;
Simon, Lauren A;
Parham, Louis R;
Mizuno, Rei;
Lundsmith, Emma T;
Lee, David SM;
Liang, Shun;
Wijeratne, HR Sagara;
Marti, Stefanie;
Chau, Lillian;
Giroux, Veronique;
Wilkins, Benjamin J;
Wu, Gary D;
Shah, Premal;
Tartaglia, Gian G;
Hamilton, Kathryn E

Publication type:

Article

riboviz: analysis and visualization of ribosome profiling datasets.

Published in:

BMC Bioinformatics, 2017, v. 18, p. 1, doi. 10.1186/s12859-017-1873-8

By:

Oana Carja;
Tongji Xing;
Wallace, Edward W. J.;
Plotkin, Joshua B.;
Shah, Premal

Publication type:

Article

Intragenomic variation in non-adaptive nucleotide biases causes underestimation of selection on synonymous codon usage.

Published in:

PLoS Genetics, 2022, v. 18, n. 6, p. 1, doi. 10.1371/journal.pgen.1010256

By:

Cope, Alexander L.;
Shah, Premal

Publication type:

Article

Blockchain-Based Crop Recommendation System for Precision Farming in IoT Environment.

Published in:

Agronomy, 2023, v. 13, n. 10, p. 2642, doi. 10.3390/agronomy13102642

By:

Patel, Devangi Hitenkumar;
Shah, Kamya Premal;
Gupta, Rajesh;
Jadav, Nilesh Kumar;
Tanwar, Sudeep;
Neagu, Bogdan Constantin;
Attila, Simo;
Alqahtani, Fayez;
Tolba, Amr

Publication type:

Article

Mental health in autistic adults: A rapid review of prevalence of psychiatric disorders and umbrella review of the effectiveness of interventions within a neurodiversity informed perspective.

Published in:

PLoS ONE, 2023, v. 18, n. 7, p. 1, doi. 10.1371/journal.pone.0288275

By:

Curnow, Eleanor;
Rutherford, Marion;
Maciver, Donald;
Johnston, Lorna;
Prior, Susan;
Boilson, Marie;
Shah, Premal;
Jenkins, Natalie;
Meff, Tamsin

Publication type:

Article

NADcapPro and circNC: methods for accurate profiling of NAD and non-canonical RNA caps in eukaryotes.

Published in:

Communications Biology, 2023, v. 6, n. 1, p. 1, doi. 10.1038/s42003-023-04774-6

By:

Sharma, Sunny;
Yang, Jun;
Favate, John;
Shah, Premal;
Kiledjian, Megerditch

Publication type:

Article

The landscape of transcriptional and translational changes over 22 years of bacterial adaptation.

Published in:

eLife, 2022, p. 1, doi. 10.7554/eLife.81979

By:

Favate, John S.;
Shun Liang;
Cope, Alexander L.;
Yadavalli, Srujana S.;
Shah, Premal

Publication type:

Article

Ribosomal stalk proteins RPLP1 and RPLP2 promote biogenesis of flaviviral and cellular multi-pass transmembrane proteins.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 17, p. 9872, doi. 10.1093/nar/gkaa717

By:

Campos, Rafael K;
Wijeratne, H R Sagara;
Shah, Premal;
Garcia-Blanco, Mariano A;
Bradrick, Shelton S

Publication type:

Article

Estimating Gene Expression and Codon-Specific Translational Efficiencies, Mutation Biases, and Selection Coefficients from Genomic Data Alone.

Published in:

Genome Biology & Evolution, 2015, v. 7, n. 6, p. 1559, doi. 10.1093/gbe/evv087

By:

Gilchrist, Michael A.;
Wei-Chen Chen;
Shah, Premal;
Landerer, Cedric L.;
Zaretzki, Russell

Publication type:

Article

Weak 5′-mRNA Secondary Structures in Short Eukaryotic Genes.

Published in:

Genome Biology & Evolution, 2012, v. 4, n. 10, p. 1046, doi. 10.1093/gbe/evs082

By:

Ding, Yang;
Shah, Premal;
Plotkin, Joshua B.

Publication type:

Article

Weak 5′-mRNA Secondary Structures in Short Eukaryotic Genes.

Published in:

Genome Biology & Evolution, 2012, v. 4, n. 9, p. 1046, doi. 10.1093/gbe/evs082

By:

Ding, Yang;
Shah, Premal;
Plotkin, Joshua B.

Publication type:

Article

riboviz 2: a flexible and robust ribosome profiling data analysis and visualization workflow.

Published in:

Bioinformatics, 2022, v. 38, n. 8, p. 2358, doi. 10.1093/bioinformatics/btac093

By:

Cope, Alexander L;
Anderson, Felicity;
Favate, John;
Jackson, Michael;
Mok, Amanda;
Kurowska, Anna;
Liu, Junchen;
MacKenzie, Emma;
Shivakumar, Vikram;
Tilton, Peter;
Winterbourne, Sophie M;
Xue, Siyin;
Kavoussanakis, Kostas;
Lareau, Liana F;
Shah, Premal;
Wallace, Edward W J

Publication type:

Article

Linking genotypic and phenotypic changes in the E. coli long-term evolution experiment using metabolomics.

Published in:

eLife, 2023, p. 1, doi. 10.7554/eLife.87039

By:

Favate, John S.;
Skalenko, Kyle S.;
Chiles, Eric;
Xiaoyang Su;
Yadavalli, Srujana Samhita;
Shah, Premal

Publication type:

Article

Celf4 controls mRNA translation underlying synaptic development in the prenatal mammalian neocortex.

Published in:

Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-41730-8

By:

Salamon, Iva;
Park, Yongkyu;
Miškić, Terezija;
Kopić, Janja;
Matteson, Paul;
Page, Nicholas F.;
Roque, Alfonso;
McAuliffe, Geoffrey W.;
Favate, John;
Garcia-Forn, Marta;
Shah, Premal;
Judaš, Miloš;
Millonig, James H.;
Kostović, Ivica;
De Rubeis, Silvia;
Hart, Ronald P.;
Krsnik, Željka;
Rasin, Mladen-Roko

Publication type:

Article

The role of epistasis in protein evolution.

Published in:

Nature, 2013, v. 497, n. 7451, p. E1, doi. 10.1038/nature12219

By:

McCandlish, David M.;
Rajon, Etienne;
Shah, Premal;
Ding, Yang;
Plotkin, Joshua B.

Publication type:

Article

Non-optimal codon usage is a mechanism to achieve circadian clock conditionality.

Published in:

Nature, 2013, v. 495, n. 7439, p. 116, doi. 10.1038/nature11942

By:

Xu, Yao;
Ma, Peijun;
Shah, Premal;
Rokas, Antonis;
Liu, Yi;
Johnson, Carl Hirschie

Publication type:

Article