Works by Severin, Jessica

Results: 23

Use of Massage Therapy for Pain, 2018-2023: A Systematic Review.

Published in:

JAMA Network Open, 2024, v. 7, n. 7, p. e2422259, doi. 10.1001/jamanetworkopen.2024.22259

By:

Mak, Selene;
Allen, Jennifer;
Begashaw, Meron;
Miake-Lye, Isomi;
Beroes-Severin, Jessica;
De Vries, Gerardo;
Lawson, Emily;
Shekelle, Paul G.

Publication type:

Article

Massage for Pain: An Evidence Map.

Published in:

Journal of Alternative & Complementary Medicine, 2019, v. 25, n. 5, p. 475, doi. 10.1089/acm.2018.0282

By:

Miake-Lye, Isomi M.;
Mak, Selene;
Lee, Jason;
Luger, Tana;
Taylor, Stephanie L.;
Shanman, Roberta;
Beroes-Severin, Jessica M.;
Shekelle, Paul G.

Publication type:

Article

Author Correction: Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network.

Published in:

2022

By:

Grapotte, Mathys;
Saraswat, Manu;
Bessière, Chloé;
Menichelli, Christophe;
Ramilowski, Jordan A.;
Severin, Jessica;
Hayashizaki, Yoshihide;
Itoh, Masayoshi;
Tagami, Michihira;
Murata, Mitsuyoshi;
Kojima-Ishiyama, Miki;
Noma, Shohei;
Noguchi, Shuhei;
Kasukawa, Takeya;
Hasegawa, Akira;
Suzuki, Harukazu;
Nishiyori-Sueki, Hiromi;
Frith, Martin C.;
FANTOM consortium;
Abugessaisa, Imad

Publication type:

Correction Notice

Reconstruction of Monocyte Transcriptional Regulatory Network Accompanies Monocytic Functions in Human Fibroblasts.

Published in:

PLoS ONE, 2012, v. 7, n. 3, p. 1, doi. 10.1371/journal.pone.0033474

By:

Suzuki, Takahiro;
Nakano-Ikegaya, Mika;
Yabukami-Okuda, Haruka;
de Hoon, Michiel;
Severin, Jessica;
Saga-Hatano, Satomi;
Shin, Jay W.;
Kubosaki, Atsutaka;
Simon, Christophe;
Hasegawa, Yuki;
Hayashizaki, Yoshihide;
Suzuki, Harukazu

Publication type:

Article

Mapping Mammalian Cell-type-specific Transcriptional Regulatory Networks Using KD-CAGE and ChIP-seq Data in the TC-YIK Cell Line.

Published in:

Frontiers in Genetics, 2015, v. 6, p. 1, doi. 10.3389/fgene.2015.00331

By:

Lizio, Marina;
Yuri Ishizu;
Masayoshi Itoh;
Timo Lassmann;
Akira Hasegawa;
Atsutaka Kubosaki;
Severin, Jessica;
Hideya Kawaji;
Yukio Nakamura;
Harukazu Suzuki;
Yoshihide Hayashizaki;
Carninci, Piero;
Forrest, Alistair R. R.;
Boden, Mikael

Publication type:

Article

C1 CAGE detects transcription start sites and enhancer activity at single-cell resolution.

Published in:

Nature Communications, 2019, v. 10, n. 1, p. 1, doi. 10.1038/s41467-018-08126-5

By:

Kouno, Tsukasa;
Moody, Jonathan;
Kwon, Andrew Tae-Jun;
Shibayama, Youtaro;
Kato, Sachi;
Huang, Yi;
Böttcher, Michael;
Motakis, Efthymios;
Mendez, Mickaël;
Severin, Jessica;
Luginbühl, Joachim;
Abugessaisa, Imad;
Hasegawa, Akira;
Takizawa, Satoshi;
Arakawa, Takahiro;
Furuno, Masaaki;
Ramalingam, Naveen;
West, Jay;
Suzuki, Harukazu;
Kasukawa, Takeya

Publication type:

Article

What Is the Optimal Primary Care Panel Size?: A Systematic Review.

Published in:

2020

By:

Paige, Neil M.;
Apaydin, Eric A.;
Goldhaber-Fiebert, Jeremy D.;
Mak, Selene;
Miake-Lye, Isomi M.;
Begashaw, Meron M.;
Severin, Jessica M.;
Shekelle, Paul G.

Publication type:

journal article

Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network.

Published in:

Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-23143-7

By:

Grapotte, Mathys;
Saraswat, Manu;
Bessière, Chloé;
Menichelli, Christophe;
Ramilowski, Jordan A.;
Severin, Jessica;
Hayashizaki, Yoshihide;
Itoh, Masayoshi;
Tagami, Michihira;
Murata, Mitsuyoshi;
Kojima-Ishiyama, Miki;
Noma, Shohei;
Noguchi, Shuhei;
Kasukawa, Takeya;
Hasegawa, Akira;
Suzuki, Harukazu;
Nishiyori-Sueki, Hiromi;
Frith, Martin C.;
FANTOM consortium;
Abugessaisa, Imad

Publication type:

Article

Annotation of nuclear lncRNAs based on chromatin interactions.

Published in:

PLoS ONE, 2024, v. 19, n. 5, p. 1, doi. 10.1371/journal.pone.0295971

By:

Agrawal, Saumya;
Buyan, Andrey;
Severin, Jessica;
Koido, Masaru;
Alam, Tanvir;
Abugessaisa, Imad;
Chang, Howard Y.;
Dostie, Josée;
Itoh, Masayoshi;
Kere, Juha;
Kondo, Naoto;
Li, Yunjing;
Makeev, Vsevolod J.;
Mendez, Mickaël;
Okazaki, Yasushi;
Ramilowski, Jordan A.;
Sigorskikh, Andrey I.;
Strug, Lisa J.;
Yagi, Ken;
Yasuzawa, Kayoko

Publication type:

Article

Linking promoters to functional transcripts in small samples with nanoCAGE and CAGEscan.

Published in:

Nature Methods, 2010, v. 7, n. 7, p. 528, doi. 10.1038/nmeth.1470

By:

Plessy, Charles;
Bertin, Nicolas;
Takahashi, Hazuki;
Simone, Roberto;
Salimullah, Md;
Lassmann, Timo;
Vitezic, Morana;
Severin, Jessica;
Olivarius, Signe;
Lazarevic, Dejan;
Hornig, Nadine;
Orlando, Valerio;
Bell, Ian;
Hui Gao;
Dumais, Jacqueline;
Kapranov, Philipp;
Huaien Wang;
Davis, Carrie A.;
Gingeras, Thomas R.;
Jun Kawai

Publication type:

Article

Update of the FANTOM web resource: enhancement for studying noncoding genomes.

Published in:

Nucleic Acids Research, 2025, v. 53, n. D1, p. D419, doi. 10.1093/nar/gkae1047

By:

Nobusada, Tomoe;
Yip, Chi Wai;
Agrawal, Saumya;
Severin, Jessica;
Abugessaisa, Imad;
Hasegawa, Akira;
Hon, Chung Chau;
Ide, Satoru;
Koido, Masaru;
Kondo, Atsushi;
Masuya, Hiroshi;
Oki, Shinya;
Tagami, Michihira;
Takada, Toyoyuki;
Terao, Chikashi;
Thalhath, Nishad;
Walker, Scott;
Yasuzawa, Kayoko;
Shin, Jay W;
de Hoon, Michiel J L

Publication type:

Article

Update of the FANTOM web resource: expansion to provide additional transcriptome atlases.

Published in:

Nucleic Acids Research, 2019, v. 47, n. D1, p. D752, doi. 10.1093/nar/gky1099

By:

Lizio, Marina;
Abugessaisa, Imad;
Noguchi, Shuhei;
Kondo, Atsushi;
Hasegawa, Akira;
Hon, Chung Chau;
de Hoon, Michiel;
Severin, Jessica;
Oki, Shinya;
Hayashizaki, Yoshihide;
Carninci, Piero;
Kasukawa, Takeya;
Kawaji, Hideya

Publication type:

Article

Escape from Social Suppression of Sexual Behavior and of Ovulation in Female Common Marmosets<sup>a</sup>.

Published in:

Annals of the New York Academy of Sciences, 1997, v. 807, n. 1, p. 567, doi. 10.1111/j.1749-6632.1997.tb51970.x

By:

SALTZMAN, WENDY;
SCHULTZ-DARKEN, NANCY J.;
SEVERIN, JESSICA M.;
ABBOTT, DAVID H.

Publication type:

Article

Automatic matrix determination in four dye fluorescence-based DNA sequencing.

Published in:

Electrophoresis, 1996, v. 17, n. 6, p. 1143, doi. 10.1002/elps.1150170626

By:

Yin, Zhongbin;
Severin, Jessica;
Giddings, Michael C.;
Huang, Wei-an;
Westphall, Michael S.;
Smith, Lloyd M.

Publication type:

Article

Behavioral and social correlates of escape from suppression of ovulation in female common marmosets housed with the natal family.

Published in:

American Journal of Primatology, 1997, v. 41, n. 1, p. 1, doi. 10.1002/(SICI)1098-2345(1997)41:1<1::AID-AJP1>3.0.CO;2-0

By:

Saltzman, Wendy;
Severin, Jessica M.;
Schultz-Darken, Nancy J.;
Abbott, David H.

Publication type:

Article

ZENBU-Reports: a graphical web-portal builder for interactive visualization and dissemination of genome-scale data.

Published in:

NAR Genomics & Bioinformatics, 2023, v. 5, n. 3, p. 1, doi. 10.1093/nargab/lqad075

By:

Severin, Jessica;
Agrawal, Saumya;
Ramilowski, Jordan A;
Deviatiiarov, Ruslan;
Shin, Jay W;
Carninci, Piero;
de Hoon, Michiel

Publication type:

Article

Use of Acupuncture for Adult Health Conditions, 2013 to 2021: A Systematic Review.

Published in:

JAMA Network Open, 2022, v. 5, n. 11, p. e2243665, doi. 10.1001/jamanetworkopen.2022.43665

By:

Allen, Jennifer;
Mak, Selene S.;
Begashaw, Meron;
Larkin, Jody;
Miake-Lye, Isomi;
Beroes-Severin, Jessica;
Olson, Juli;
Shekelle, Paul G.

Publication type:

Article

Gateways to the FANTOM5 promoter level mammalian expression atlas.

Published in:

Genome Biology, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s13059-014-0560-6

By:

Lizio, Marina;
Harshbarger, Jayson;
Hisashi Shimoji;
Severin, Jessica;
Takeya Kasukawa;
Sahin, Serkan;
Abugessaisa, Imad;
Shiro Fukuda;
Fumi Hori;
Sachi Ishikawa-Kato;
Mungall, Christopher J.;
Arner, Erik;
Baillie, J. Kenneth;
Bertin, Nicolas;
Hidemasa Bono;
de Hoon, Michiel;
Diehl, Alexander D.;
Dimont, Emmanuel;
Freeman, Tom C.;
Kaori Fujieda

Publication type:

Article

eHive: An artificial Intelligence workflow systemfor genomic analysis.

Published in:

BMC Bioinformatics, 2010, v. 11, p. 240, doi. 10.1186/1471-2105-11-240

By:

Severin, Jessica;
Beal, Kathryn;
Vilella, Albert J.;
Fitzgerald, Stephen;
Schuster, Michael;
Gordon, Leo;
Ureta-Vidal, Abel;
Flicek, Paul;
Herrero, Javier

Publication type:

Article

A conditional knockout resource for the genome-wide study of mouse gene function.

Published in:

Nature, 2011, v. 474, n. 7351, p. 337, doi. 10.1038/nature10163

By:

Skarnes, William C.;
Rosen, Barry;
West, Anthony P.;
Koutsourakis, Manousos;
Bushell, Wendy;
Iyer, Vivek;
Mujica, Alejandro O.;
Thomas, Mark;
Harrow, Jennifer;
Cox, Tony;
Jackson, David;
Severin, Jessica;
Biggs, Patrick;
Fu, Jun;
Nefedov, Michael;
de Jong, Pieter J.;
Stewart, A. Francis;
Bradley, Allan

Publication type:

Article

Update of the FANTOM web resource: high resolution transcriptome of diverse cell types in mammals.

Published in:

Nucleic Acids Research, 2017, v. 45, n. D1, p. D737, doi. 10.1093/nar/gkw995

By:

Lizio, Marina;
Harshbarger, Jayson;
Abugessaisa, Imad;
Shuei Noguchi;
Atsushi Kondo;
Severin, Jessica;
Mungall, Chris;
Arenillas, David;
Mathelier, Anthony;
Medvedeva, Yulia A.;
Lennartsson, Andreas;
Drabløs, Finn;
Ramilowski, Jordan A.;
Rackham, Owen;
Gough, Julian;
Andersson, Robin;
Sandelin, Albin;
Ienasescu, Hans;
Hiromasa Ono;
Hidemasa Bono

Publication type:

Article

Update of the FANTOM web resource: from mammalian transcriptional landscape to its dynamic regulation.

Published in:

Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D856, doi. 10.1093/nar/gkq1112

By:

Kawaji, Hideya;
Severin, Jessica;
Lizio, Marina;
Forrest, Alistair R. R.;
van Nimwegen, Erik;
Rehli, Michael;
Schroder, Kate;
Irvine, Katharine;
Suzuki, Harukazu;
Carninci, Piero;
Hayashizaki, Yoshihide;
Daub, Carsten O.

Publication type:

Article

Interactive visualization and analysis of large-scale sequencing datasets using ZENBU.

Published in:

Nature Biotechnology, 2014, v. 32, n. 3, p. 217, doi. 10.1038/nbt.2840

By:

Severin, Jessica;
Lizio, Marina;
Harshbarger, Jayson;
Kawaji, Hideya;
Daub, Carsten O;
Hayashizaki, Yoshihide;
Bertin, Nicolas;
Forrest, Alistair R R

Publication type:

Article